Wall clock time and date at job start Tue Mar 31 2020 16:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35743 * 120.33591 * 2 1 4 4 C 1.40827 * 119.72041 * 180.02562 * 3 2 1 5 5 C 1.34542 * 120.58093 * 0.22265 * 4 3 2 6 6 N 1.37437 * 120.74345 * 359.55611 * 5 4 3 7 7 C 1.35122 * 131.28291 * 180.12569 * 6 5 4 8 8 C 1.38058 * 108.77129 * 180.28681 * 7 6 5 9 9 C 1.47501 * 126.37584 * 179.97438 * 8 7 6 10 10 O 1.21602 * 119.99643 * 328.00502 * 9 8 7 11 11 N 1.34770 * 120.00234 * 148.01101 * 9 8 7 12 12 C 1.46500 * 119.99795 * 3.92529 * 11 9 8 13 13 C 1.53008 * 109.46644 * 95.26215 * 12 11 9 14 14 O 1.42902 * 109.47152 * 66.75785 * 13 12 11 15 15 C 1.46497 * 120.00102 * 183.93258 * 11 9 8 16 16 C 1.53002 * 109.47209 * 89.99740 * 15 11 9 17 17 N 1.46501 * 109.47221 * 180.02562 * 16 15 11 18 18 C 1.36938 * 119.99999 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99927 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00001 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99813 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00040 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47149 * 59.99493 * 22 20 18 24 24 H 1.48497 * 109.46954 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47009 * 299.99472 * 22 20 18 26 26 C 1.41192 * 107.25401 * 0.02562 * 8 7 6 27 27 C 1.37946 * 119.81181 * 0.44028 * 6 5 4 28 28 H 1.08993 * 109.47594 * 269.97862 * 1 2 3 29 29 H 1.09007 * 109.46912 * 29.98142 * 1 2 3 30 30 H 1.09000 * 109.46771 * 149.97601 * 1 2 3 31 31 H 1.08001 * 120.13618 * 359.97438 * 3 2 1 32 32 H 1.07991 * 119.70555 * 179.97438 * 4 3 2 33 33 H 1.08000 * 119.62783 * 179.71634 * 5 4 3 34 34 H 1.08003 * 125.61837 * 0.31697 * 7 6 5 35 35 H 1.09002 * 109.47256 * 215.25374 * 12 11 9 36 36 H 1.08995 * 109.47374 * 335.26200 * 12 11 9 37 37 H 1.08996 * 109.46737 * 186.75072 * 13 12 11 38 38 H 1.08995 * 109.47153 * 306.75251 * 13 12 11 39 39 H 0.96691 * 113.99962 * 180.02562 * 14 13 12 40 40 H 1.08997 * 109.47153 * 209.99749 * 15 11 9 41 41 H 1.09001 * 109.47350 * 330.00011 * 15 11 9 42 42 H 1.09003 * 109.47050 * 299.99620 * 16 15 11 43 43 H 1.08997 * 109.47434 * 59.99693 * 16 15 11 44 44 H 0.96993 * 119.99992 * 359.97438 * 17 16 15 45 45 H 0.97001 * 119.99447 * 180.02562 * 21 20 18 46 46 H 1.08003 * 126.56752 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.1716 0.0000 4 6 3.6008 1.1564 -0.0005 5 6 4.2728 -0.0091 -0.0056 6 7 3.6004 -1.2078 -0.0011 7 6 4.0499 -2.4821 -0.0024 8 6 2.9649 -3.3358 -0.0026 9 6 3.0118 -4.8101 -0.0044 10 8 3.9234 -5.3886 -0.5637 11 7 2.0443 -5.5158 0.6137 12 6 0.9012 -4.8226 1.2130 13 6 -0.2620 -4.8040 0.2192 14 8 -0.7371 -6.1364 0.0169 15 6 2.1357 -6.9761 0.6865 16 6 2.8857 -7.3775 1.9582 17 7 2.9777 -8.8378 2.0307 18 6 3.6105 -9.4323 3.0896 19 1 4.0422 -8.8246 3.8711 20 6 3.6971 -10.8160 3.1585 21 7 3.1706 -11.5566 2.2063 22 14 4.5610 -11.6270 4.6026 23 1 3.8778 -11.2469 5.8652 24 1 4.5165 -13.1024 4.4410 25 1 5.9752 -11.1763 4.6500 26 6 1.8020 -2.5351 -0.0021 27 6 2.2210 -1.2204 -0.0006 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6603 2.1113 -0.0004 32 1 4.1460 2.0886 -0.0010 33 1 5.3528 -0.0027 -0.0106 34 1 5.0870 -2.7832 -0.0026 35 1 0.5954 -5.3434 2.1204 36 1 1.1851 -3.7995 1.4593 37 1 -1.0685 -4.1870 0.6155 38 1 0.0781 -4.3913 -0.7306 39 1 -1.4761 -6.2005 -0.6034 40 1 1.1327 -7.4024 0.7064 41 1 2.6723 -7.3505 -0.1852 42 1 3.8888 -6.9513 1.9382 43 1 2.3492 -7.0031 2.8300 44 1 2.5896 -9.3836 1.3290 45 1 3.2308 -12.5235 2.2548 46 1 0.7801 -2.8847 -0.0017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272294927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:32 Heat of formation + Delta-G solvation = 17.943905 kcal Electronic energy + Delta-G solvation = -28150.479316 eV Core-core repulsion = 24235.259740 eV Total energy + Delta-G solvation = -3915.219576 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.55070 -39.65785 -37.18585 -36.90071 -35.41421 -34.63560 -34.05242 -31.62361 -30.57192 -29.51034 -28.73588 -27.49148 -27.11732 -24.35255 -23.25354 -22.75494 -22.25704 -21.66990 -20.96299 -18.94801 -17.78913 -17.66557 -17.07555 -16.75940 -16.52829 -15.85056 -15.72571 -15.46053 -14.90813 -14.59316 -14.45216 -14.23747 -13.99295 -13.70331 -13.57194 -13.42436 -13.15147 -13.07312 -13.06649 -12.57028 -12.41193 -12.11997 -12.00970 -11.74813 -11.68863 -11.35582 -11.07806 -10.82798 -10.79766 -10.51200 -10.37982 -10.10903 -10.04344 -9.72324 -9.57958 -8.76707 -8.75356 -8.32091 -7.62470 -6.80495 -5.65023 -2.93416 0.44233 1.07837 2.06231 2.36188 3.12407 3.19876 3.47216 3.52043 3.55449 3.57388 4.16221 4.17075 4.29718 4.47753 4.54155 4.62324 4.70940 4.90648 4.97055 5.00288 5.11680 5.12223 5.19212 5.22345 5.24310 5.40278 5.47747 5.57128 5.59317 5.66486 5.75282 5.80003 5.93551 6.01191 6.03498 6.10046 6.22106 6.39087 6.43644 6.57791 6.75221 6.92778 6.97132 7.10598 7.55450 7.72095 7.79822 8.45479 8.54083 9.64277 10.22585 10.58108 11.58017 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.002594 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.435670 B =10791.837501 C =11712.243834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.043 4.043 3 C -0.140 4.140 4 C -0.134 4.134 5 C 0.039 3.961 6 N -0.340 5.340 7 C 0.015 3.985 8 C -0.158 4.158 9 C 0.580 3.420 10 O -0.534 6.534 11 N -0.590 5.590 12 C 0.094 3.906 13 C 0.054 3.946 14 O -0.560 6.560 15 C 0.111 3.889 16 C 0.143 3.857 17 N -0.729 5.729 18 C -0.235 4.235 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.908 3.092 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.178 4.178 27 C 0.032 3.968 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.145 0.855 33 H 0.162 0.838 34 H 0.181 0.819 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.376 0.624 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.019 0.981 43 H 0.016 0.984 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 31.126 -6.703 32.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.044 4.044 3 C -0.161 4.161 4 C -0.154 4.154 5 C -0.079 4.079 6 N -0.003 5.003 7 C -0.118 4.118 8 C -0.166 4.166 9 C 0.368 3.632 10 O -0.411 6.411 11 N -0.321 5.321 12 C -0.030 4.030 13 C -0.025 4.025 14 O -0.365 6.365 15 C -0.011 4.011 16 C 0.015 3.985 17 N -0.374 5.374 18 C -0.366 4.366 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.202 4.202 27 C -0.072 4.072 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.163 0.837 33 H 0.179 0.821 34 H 0.198 0.802 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.223 0.777 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.037 0.963 43 H 0.034 0.966 44 H 0.218 0.782 45 H 0.065 0.935 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.835 30.784 -6.415 32.180 hybrid contribution 0.020 -0.390 0.220 0.448 sum -6.816 30.394 -6.194 31.759 Atomic orbital electron populations 1.20733 0.89645 1.03374 1.02982 1.19363 0.96428 0.90142 0.98516 1.20812 0.93682 0.97870 1.03686 1.20681 0.94823 0.97027 1.02861 1.21676 0.98506 0.83118 1.04643 1.41294 1.07195 1.05392 1.46460 1.21997 0.99819 0.79732 1.10244 1.19618 0.93226 0.93173 1.10537 1.17492 0.81871 0.85334 0.78525 1.90814 1.34775 1.71264 1.44249 1.47581 1.21516 1.07692 1.55337 1.22039 0.85008 0.99646 0.96285 1.22799 0.96063 0.84720 0.98907 1.86613 1.54571 1.27105 1.68204 1.21745 1.02335 0.77115 0.99916 1.20910 0.96782 0.86753 0.94081 1.42195 1.68514 0.99452 1.27205 1.19172 1.28014 0.89764 0.99677 0.91337 1.24740 1.01696 0.96140 0.98563 1.69662 1.50339 1.04439 1.33837 0.86244 0.79421 0.78332 0.82059 1.21342 1.21696 1.21322 1.21540 0.98674 0.89492 1.10536 1.18643 0.81880 0.94918 1.11784 0.90365 0.90883 0.90964 0.84987 0.83736 0.82109 0.80188 0.89390 0.87460 0.92818 0.93223 0.77743 0.89107 0.90018 0.96261 0.96583 0.78217 0.93526 0.82490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 9.91 36.01 0.36 -0.21 16 2 C -0.04 -0.34 5.91 -104.32 -0.62 -0.96 16 3 C -0.14 -0.92 9.72 -39.50 -0.38 -1.31 16 4 C -0.13 -0.82 9.97 -39.91 -0.40 -1.22 16 5 C 0.04 0.29 10.89 -16.35 -0.18 0.11 16 6 N -0.34 -3.56 2.92 -60.42 -0.18 -3.74 16 7 C 0.02 0.19 11.50 -16.17 -0.19 0.00 16 8 C -0.16 -2.17 5.53 -105.07 -0.58 -2.75 16 9 C 0.58 10.00 7.61 -12.49 -0.10 9.91 16 10 O -0.53 -11.37 16.59 5.28 0.09 -11.28 16 11 N -0.59 -9.56 2.47 -174.93 -0.43 -9.99 16 12 C 0.09 1.14 5.35 -4.04 -0.02 1.12 16 13 C 0.05 0.52 6.03 37.16 0.22 0.75 16 14 O -0.56 -6.52 12.09 -35.23 -0.43 -6.95 16 15 C 0.11 2.17 5.40 -4.04 -0.02 2.15 16 16 C 0.14 3.30 6.58 -4.04 -0.03 3.28 16 17 N -0.73 -20.23 5.60 -59.90 -0.34 -20.56 16 18 C -0.23 -7.04 9.99 -15.06 -0.15 -7.19 16 19 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 21 N -0.93 -29.59 13.06 55.49 0.72 -28.87 16 22 Si 0.91 23.45 29.55 -169.99 -5.02 18.43 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 C -0.18 -1.94 7.81 -38.55 -0.30 -2.24 16 27 C 0.03 0.33 6.60 -84.00 -0.55 -0.22 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.27 8.09 -51.92 -0.42 -0.15 16 30 H 0.07 0.35 7.70 -51.93 -0.40 -0.05 16 31 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 32 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 33 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.18 1.98 8.06 -52.48 -0.42 1.56 16 35 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 36 H 0.11 1.12 4.75 -51.93 -0.25 0.87 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.47 6.97 -51.93 -0.36 0.11 16 39 H 0.38 2.64 9.12 45.56 0.42 3.06 16 40 H 0.09 1.75 6.68 -51.93 -0.35 1.40 16 41 H 0.08 1.76 7.37 -51.93 -0.38 1.38 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 11.08 7.67 -40.82 -0.31 10.77 16 45 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 46 H 0.16 1.37 4.03 -52.48 -0.21 1.16 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -38.71 379.31 -8.51 -47.22 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.62 Total: 9.39 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -3.03 Total: 0.63 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -0.22 Total: -63.16 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.34 Total: -18.23 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.71 -8.51 -47.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272294927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.164 kcal (2) G-P(sol) polarization free energy of solvation -38.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds