Wall clock time and date at job start Tue Mar 31 2020 16:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35743 * 120.33591 * 2 1 4 4 C 1.40827 * 119.72041 * 180.02562 * 3 2 1 5 5 C 1.34542 * 120.58093 * 0.22265 * 4 3 2 6 6 N 1.37437 * 120.74345 * 359.55611 * 5 4 3 7 7 C 1.35122 * 131.28291 * 180.12569 * 6 5 4 8 8 C 1.38058 * 108.77129 * 180.28681 * 7 6 5 9 9 C 1.47501 * 126.37584 * 179.97438 * 8 7 6 10 10 O 1.21602 * 119.99643 * 328.00502 * 9 8 7 11 11 N 1.34770 * 120.00234 * 148.01101 * 9 8 7 12 12 C 1.46500 * 119.99795 * 3.92529 * 11 9 8 13 13 C 1.53008 * 109.46644 * 95.26215 * 12 11 9 14 14 O 1.42902 * 109.47152 * 66.75785 * 13 12 11 15 15 C 1.46497 * 120.00102 * 183.93258 * 11 9 8 16 16 C 1.53002 * 109.47209 * 89.99740 * 15 11 9 17 17 N 1.46501 * 109.47221 * 180.02562 * 16 15 11 18 18 C 1.36938 * 119.99999 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99927 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00001 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99813 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00040 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47149 * 59.99493 * 22 20 18 24 24 H 1.48497 * 109.46954 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47009 * 299.99472 * 22 20 18 26 26 C 1.41192 * 107.25401 * 0.02562 * 8 7 6 27 27 C 1.37946 * 119.81181 * 0.44028 * 6 5 4 28 28 H 1.08993 * 109.47594 * 269.97862 * 1 2 3 29 29 H 1.09007 * 109.46912 * 29.98142 * 1 2 3 30 30 H 1.09000 * 109.46771 * 149.97601 * 1 2 3 31 31 H 1.08001 * 120.13618 * 359.97438 * 3 2 1 32 32 H 1.07991 * 119.70555 * 179.97438 * 4 3 2 33 33 H 1.08000 * 119.62783 * 179.71634 * 5 4 3 34 34 H 1.08003 * 125.61837 * 0.31697 * 7 6 5 35 35 H 1.09002 * 109.47256 * 215.25374 * 12 11 9 36 36 H 1.08995 * 109.47374 * 335.26200 * 12 11 9 37 37 H 1.08996 * 109.46737 * 186.75072 * 13 12 11 38 38 H 1.08995 * 109.47153 * 306.75251 * 13 12 11 39 39 H 0.96691 * 113.99962 * 180.02562 * 14 13 12 40 40 H 1.08997 * 109.47153 * 209.99749 * 15 11 9 41 41 H 1.09001 * 109.47350 * 330.00011 * 15 11 9 42 42 H 1.09003 * 109.47050 * 299.99620 * 16 15 11 43 43 H 1.08997 * 109.47434 * 59.99693 * 16 15 11 44 44 H 0.96993 * 119.99992 * 359.97438 * 17 16 15 45 45 H 0.97001 * 119.99447 * 180.02562 * 21 20 18 46 46 H 1.08003 * 126.56752 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1926 1.1716 0.0000 4 6 3.6008 1.1564 -0.0005 5 6 4.2728 -0.0091 -0.0056 6 7 3.6004 -1.2078 -0.0011 7 6 4.0499 -2.4821 -0.0024 8 6 2.9649 -3.3358 -0.0026 9 6 3.0118 -4.8101 -0.0044 10 8 3.9234 -5.3886 -0.5637 11 7 2.0443 -5.5158 0.6137 12 6 0.9012 -4.8226 1.2130 13 6 -0.2620 -4.8040 0.2192 14 8 -0.7371 -6.1364 0.0169 15 6 2.1357 -6.9761 0.6865 16 6 2.8857 -7.3775 1.9582 17 7 2.9777 -8.8378 2.0307 18 6 3.6105 -9.4323 3.0896 19 1 4.0422 -8.8246 3.8711 20 6 3.6971 -10.8160 3.1585 21 7 3.1706 -11.5566 2.2063 22 14 4.5610 -11.6270 4.6026 23 1 3.8778 -11.2469 5.8652 24 1 4.5165 -13.1024 4.4410 25 1 5.9752 -11.1763 4.6500 26 6 1.8020 -2.5351 -0.0021 27 6 2.2210 -1.2204 -0.0006 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6603 2.1113 -0.0004 32 1 4.1460 2.0886 -0.0010 33 1 5.3528 -0.0027 -0.0106 34 1 5.0870 -2.7832 -0.0026 35 1 0.5954 -5.3434 2.1204 36 1 1.1851 -3.7995 1.4593 37 1 -1.0685 -4.1870 0.6155 38 1 0.0781 -4.3913 -0.7306 39 1 -1.4761 -6.2005 -0.6034 40 1 1.1327 -7.4024 0.7064 41 1 2.6723 -7.3505 -0.1852 42 1 3.8888 -6.9513 1.9382 43 1 2.3492 -7.0031 2.8300 44 1 2.5896 -9.3836 1.3290 45 1 3.2308 -12.5235 2.2548 46 1 0.7801 -2.8847 -0.0017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272294927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:31 Heat of formation + Delta-G solvation = -9.666240 kcal Electronic energy + Delta-G solvation = -28151.676582 eV Core-core repulsion = 24235.259740 eV Total energy + Delta-G solvation = -3916.416842 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.31033 -40.91809 -38.19204 -37.63613 -37.02683 -35.94234 -35.06725 -33.49830 -31.65457 -30.67091 -29.56084 -28.91224 -27.76538 -26.02699 -24.56904 -23.84895 -23.18607 -22.75909 -22.14486 -20.11814 -19.19036 -18.57834 -18.51504 -17.75009 -17.48547 -16.93834 -16.73219 -16.41935 -16.30788 -15.97787 -15.46085 -15.31322 -15.09464 -15.07426 -14.98499 -14.65026 -14.44577 -14.04141 -13.86712 -13.73317 -13.19463 -13.11250 -13.03349 -12.89165 -12.77447 -12.55834 -12.52586 -12.28771 -12.22746 -12.16122 -11.97898 -11.88146 -11.13839 -11.00969 -10.98256 -10.83355 -9.80546 -9.52018 -9.08027 -8.30133 -7.97524 -5.29189 -0.17633 0.37066 1.08647 1.44522 1.49913 1.55517 1.58348 1.99295 2.29787 2.54321 2.55667 3.34475 3.41261 3.48703 3.61218 3.81508 3.96633 4.05684 4.06737 4.11482 4.12398 4.19754 4.28347 4.34737 4.39395 4.49108 4.52451 4.58245 4.67921 4.76484 4.81165 4.84792 4.90320 4.96167 5.05035 5.07961 5.17955 5.26488 5.37351 5.40889 5.48453 5.52280 5.68045 5.91182 6.23078 6.25836 6.40480 6.99418 7.12880 7.28719 7.99766 8.26992 9.25873 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.002594 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.435670 B =10791.837501 C =11712.243834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.061 4.061 3 C -0.134 4.134 4 C -0.121 4.121 5 C 0.011 3.989 6 N -0.340 5.340 7 C -0.004 4.004 8 C -0.184 4.184 9 C 0.576 3.424 10 O -0.590 6.590 11 N -0.588 5.588 12 C 0.086 3.914 13 C 0.057 3.943 14 O -0.590 6.590 15 C 0.131 3.869 16 C 0.151 3.849 17 N -0.741 5.741 18 C -0.254 4.254 19 H 0.073 0.927 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.982 3.018 23 H -0.273 1.273 24 H -0.290 1.290 25 H -0.279 1.279 26 C -0.183 4.183 27 C 0.029 3.971 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.163 0.837 32 H 0.180 0.820 33 H 0.182 0.818 34 H 0.179 0.821 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.395 0.605 40 H 0.096 0.904 41 H 0.054 0.946 42 H -0.001 1.001 43 H 0.026 0.974 44 H 0.375 0.625 45 H 0.254 0.746 46 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 34.699 -5.774 36.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.062 4.062 3 C -0.154 4.154 4 C -0.141 4.141 5 C -0.106 4.106 6 N -0.002 5.002 7 C -0.138 4.138 8 C -0.191 4.191 9 C 0.366 3.634 10 O -0.471 6.471 11 N -0.318 5.318 12 C -0.035 4.035 13 C -0.021 4.021 14 O -0.399 6.399 15 C 0.007 3.993 16 C 0.024 3.976 17 N -0.385 5.385 18 C -0.385 4.385 19 H 0.091 0.909 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.809 3.191 23 H -0.199 1.199 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.206 4.206 27 C -0.077 4.077 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.180 0.820 32 H 0.197 0.803 33 H 0.199 0.801 34 H 0.197 0.803 35 H 0.100 0.900 36 H 0.145 0.855 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.245 0.755 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.017 0.983 43 H 0.044 0.956 44 H 0.207 0.793 45 H 0.063 0.937 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.208 34.429 -5.473 35.815 hybrid contribution 0.417 -1.252 -0.095 1.323 sum -7.792 33.177 -5.568 34.531 Atomic orbital electron populations 1.20815 0.87676 1.04345 1.03854 1.19745 0.97949 0.89426 0.99032 1.21315 0.94060 0.98698 1.01367 1.21217 0.95106 0.97714 1.00043 1.22281 0.99955 0.82563 1.05826 1.41438 1.07635 1.05495 1.45657 1.21949 0.99626 0.80737 1.11480 1.19331 0.95283 0.90994 1.13519 1.18085 0.80892 0.86956 0.77429 1.90765 1.36919 1.72656 1.46784 1.47623 1.22766 1.06208 1.55182 1.22389 0.84463 1.00012 0.96668 1.22815 0.96162 0.84628 0.98466 1.86547 1.55809 1.28396 1.69124 1.21279 1.01403 0.79683 0.96897 1.20922 0.96174 0.84368 0.96177 1.42370 1.68362 1.01165 1.26565 1.19571 1.28219 0.90459 1.00294 0.90934 1.25685 1.02673 0.96660 1.01654 1.69833 1.51616 1.04519 1.35847 0.85100 0.78316 0.76902 0.78733 1.19873 1.21553 1.20553 1.21645 0.98588 0.89408 1.10934 1.19083 0.82051 0.95689 1.10836 0.89425 0.89098 0.90905 0.81952 0.80296 0.80057 0.80338 0.90021 0.85523 0.88616 0.92975 0.75527 0.88546 0.92698 0.98318 0.95581 0.79299 0.93714 0.80637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.91 71.24 0.71 -0.02 16 2 C -0.06 -0.76 5.91 -19.67 -0.12 -0.88 16 3 C -0.13 -1.21 9.72 22.32 0.22 -0.99 16 4 C -0.12 -1.04 9.97 22.06 0.22 -0.82 16 5 C 0.01 0.14 10.89 82.97 0.90 1.05 16 6 N -0.34 -6.85 2.92 -345.07 -1.01 -7.85 16 7 C 0.00 -0.10 11.50 84.14 0.97 0.87 16 8 C -0.18 -5.23 5.53 -20.15 -0.11 -5.34 16 9 C 0.58 21.15 7.61 86.69 0.66 21.81 16 10 O -0.59 -27.25 16.59 -4.04 -0.07 -27.32 16 11 N -0.59 -19.87 2.47 -825.61 -2.04 -21.91 16 12 C 0.09 2.06 5.35 86.38 0.46 2.52 16 13 C 0.06 1.02 6.03 71.98 0.43 1.45 16 14 O -0.59 -13.24 12.09 -148.98 -1.80 -15.04 16 15 C 0.13 5.42 5.40 86.38 0.47 5.88 16 16 C 0.15 7.30 6.58 86.38 0.57 7.87 16 17 N -0.74 -42.72 5.60 -343.44 -1.92 -44.65 16 18 C -0.25 -15.54 9.99 84.03 0.84 -14.70 16 19 H 0.07 4.28 7.83 -2.91 -0.02 4.25 16 20 C -0.07 -4.55 5.50 84.86 0.47 -4.09 16 21 N -0.97 -62.57 13.06 21.65 0.28 -62.29 16 22 Si 0.98 48.59 29.55 68.60 2.03 50.61 16 23 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 26 C -0.18 -3.84 7.81 22.94 0.18 -3.66 16 27 C 0.03 0.55 6.60 38.90 0.26 0.81 16 28 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.09 0.28 8.09 -2.38 -0.02 0.26 16 30 H 0.07 0.48 7.70 -2.39 -0.02 0.46 16 31 H 0.16 0.49 8.06 -2.91 -0.02 0.46 16 32 H 0.18 0.27 8.06 -2.92 -0.02 0.25 16 33 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 34 H 0.18 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.08 2.05 8.11 -2.39 -0.02 2.03 16 36 H 0.13 2.52 4.75 -2.39 -0.01 2.51 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.05 0.91 6.97 -2.39 -0.02 0.90 16 39 H 0.39 5.08 9.12 -74.06 -0.68 4.40 16 40 H 0.10 3.87 6.68 -2.39 -0.02 3.86 16 41 H 0.05 2.56 7.37 -2.39 -0.02 2.54 16 42 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.38 22.63 7.67 -92.71 -0.71 21.92 16 45 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 46 H 0.18 2.76 4.03 -2.91 -0.01 2.75 16 Total: -1.00 -87.52 379.31 2.23 -85.29 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: -0.36 Total: 31.41 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 7.12 Total: 11.75 kcal Atomic # 7 Polarization: -132.02 SS G_CDS: -4.68 Total: -136.70 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -1.87 Total: -42.36 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.61 kcal Total: -87.52 2.23 -85.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272294927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.621 kcal (2) G-P(sol) polarization free energy of solvation -87.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds