Wall clock time and date at job start Tue Mar 31 2020 16:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38268 * 119.53712 * 2 1 4 4 C 1.38495 * 119.23901 * 180.27788 * 3 2 1 5 5 C 1.39309 * 118.35943 * 359.46082 * 4 3 2 6 6 N 1.39713 * 120.49425 * 180.23612 * 5 4 3 7 7 C 1.47590 * 110.99655 * 132.66517 * 6 5 4 8 8 C 1.52889 * 87.78353 * 221.76335 * 7 6 5 9 9 C 1.47586 * 110.99877 * 36.55791 * 6 5 4 10 10 C 1.52452 * 114.26466 * 271.58210 * 8 7 6 11 11 N 1.46293 * 109.56618 * 272.35135 * 10 8 7 12 12 C 1.46500 * 118.72652 * 164.04292 * 11 10 8 13 13 C 1.53008 * 109.47026 * 90.00020 * 12 11 10 14 14 C 1.50697 * 109.47008 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99911 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00150 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00543 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99893 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47003 * 89.99884 * 18 16 14 20 20 H 1.48492 * 109.47632 * 210.00153 * 18 16 14 21 21 H 1.48500 * 109.47002 * 330.00306 * 18 16 14 22 22 C 1.33716 * 122.54791 * 344.02009 * 11 10 8 23 23 O 1.21276 * 118.36294 * 183.34681 * 22 11 10 24 24 C 1.50156 * 123.27682 * 3.37056 * 22 11 10 25 25 O 1.42564 * 114.25703 * 139.69739 * 8 7 6 26 26 C 1.38890 * 119.01495 * 0.56288 * 5 4 3 27 27 N 1.31823 * 120.65552 * 359.69779 * 26 5 4 28 28 H 1.08999 * 109.47335 * 89.99870 * 1 2 3 29 29 H 1.09001 * 109.47566 * 210.00072 * 1 2 3 30 30 H 1.09004 * 109.47076 * 329.99534 * 1 2 3 31 31 H 1.07993 * 120.38166 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.82036 * 179.72611 * 4 3 2 33 33 H 1.09005 * 113.50416 * 336.49382 * 7 6 5 34 34 H 1.08999 * 113.50365 * 107.03467 * 7 6 5 35 35 H 1.08994 * 113.50181 * 252.97271 * 9 6 5 36 36 H 1.09010 * 113.50345 * 23.44210 * 9 6 5 37 37 H 1.08995 * 109.45998 * 32.38052 * 10 8 7 38 38 H 1.09008 * 109.45365 * 152.34611 * 10 8 7 39 39 H 1.08995 * 109.47153 * 209.99746 * 12 11 10 40 40 H 1.09000 * 109.47237 * 330.00466 * 12 11 10 41 41 H 1.08995 * 109.46931 * 299.99862 * 13 12 11 42 42 H 1.09000 * 109.46749 * 60.00147 * 13 12 11 43 43 H 0.97001 * 120.00499 * 179.97438 * 17 16 14 44 44 H 1.09006 * 109.34690 * 102.47632 * 24 22 11 45 45 H 1.08997 * 109.34953 * 222.02238 * 24 22 11 46 46 H 1.07995 * 119.67552 * 179.68134 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2030 0.0000 4 6 3.5736 1.1958 -0.0059 5 6 4.2289 -0.0335 0.0000 6 7 5.6248 -0.0928 -0.0006 7 6 6.1142 -1.0430 1.0171 8 6 7.2012 -0.0241 1.3601 9 6 6.2007 0.9947 0.8142 10 6 8.4726 -0.1611 0.5300 11 7 9.3761 -1.1162 1.1717 12 6 10.4851 -1.6702 0.3910 13 6 11.7163 -0.7755 0.5480 14 6 12.8572 -1.3457 -0.2545 15 1 12.7180 -2.2550 -0.8203 16 6 14.0788 -0.7066 -0.2665 17 7 15.0744 -1.2039 -0.9673 18 14 14.3195 0.8666 0.7115 19 1 14.7874 0.5317 2.0805 20 1 15.3313 1.7189 0.0372 21 1 13.0308 1.5999 0.7945 22 6 9.2292 -1.5027 2.4433 23 8 10.0576 -2.2508 2.9175 24 6 8.0894 -1.0572 3.3134 25 8 7.4657 0.1031 2.7552 26 6 3.4741 -1.1994 -0.0006 27 7 2.1569 -1.1473 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6474 2.1375 0.0004 32 1 4.1317 2.1203 -0.0104 33 1 5.4066 -1.2135 1.8286 34 1 6.5042 -1.9693 0.5952 35 1 6.6633 1.7837 0.2214 36 1 5.5163 1.3811 1.5696 37 1 8.2180 -0.5167 -0.4683 38 1 8.9639 0.8092 0.4555 39 1 10.7166 -2.6730 0.7498 40 1 10.2016 -1.7168 -0.6604 41 1 11.4848 0.2274 0.1892 42 1 11.9998 -0.7288 1.5995 43 1 15.9338 -0.7540 -0.9760 44 1 7.3567 -1.8607 3.3882 45 1 8.4658 -0.8210 4.3087 46 1 3.9711 -2.1581 -0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273571695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:31 Heat of formation + Delta-G solvation = 12.835484 kcal Electronic energy + Delta-G solvation = -28347.259691 eV Core-core repulsion = 24431.818597 eV Total energy + Delta-G solvation = -3915.441094 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.23900 -40.50914 -39.31619 -37.13793 -35.62238 -33.39652 -32.92166 -32.76661 -30.70475 -29.98029 -28.01210 -27.22233 -26.87091 -25.13628 -24.65679 -23.53390 -22.16429 -21.24997 -20.20951 -18.61998 -18.27894 -17.40636 -17.10617 -16.87795 -16.18279 -16.13552 -15.87121 -15.60854 -15.05630 -14.85730 -14.66922 -14.20779 -14.09393 -13.97955 -13.79433 -13.40639 -13.25329 -13.23558 -12.85593 -12.73831 -12.65986 -12.60342 -12.51868 -12.11336 -11.79019 -11.58503 -11.26216 -10.96969 -10.70152 -10.60336 -10.31354 -10.06977 -10.05162 -9.85829 -9.83623 -9.40284 -9.16353 -8.60330 -8.55012 -8.33821 -6.06052 -4.04758 0.64532 0.85090 2.68999 2.84469 3.16035 3.22912 3.31600 3.38158 3.41453 3.54343 3.81427 3.98153 4.09809 4.17523 4.33739 4.42670 4.44339 4.44528 4.59599 4.76979 4.87656 4.98233 5.01274 5.09089 5.14540 5.19533 5.20519 5.25259 5.28275 5.32103 5.39047 5.40907 5.55620 5.61215 5.67578 5.89210 5.93047 6.07675 6.29373 6.44411 6.55715 6.58989 6.65750 7.20668 7.31478 7.61071 7.66184 7.75987 8.30699 8.48662 8.96942 9.55910 11.07014 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022584 B = 0.002504 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.528228 B =11181.652851 C =11490.976129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.103 3.897 3 C -0.148 4.148 4 C -0.099 4.099 5 C 0.021 3.979 6 N -0.415 5.415 7 C -0.019 4.019 8 C 0.071 3.929 9 C 0.025 3.975 10 C 0.117 3.883 11 N -0.600 5.600 12 C 0.123 3.877 13 C -0.022 4.022 14 C -0.519 4.519 15 H 0.074 0.926 16 C 0.069 3.931 17 N -0.901 5.901 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.267 1.267 22 C 0.478 3.522 23 O -0.534 6.534 24 C 0.052 3.948 25 O -0.352 6.352 26 C 0.089 3.911 27 N -0.466 5.466 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.015 0.985 42 H 0.018 0.982 43 H 0.264 0.736 44 H 0.087 0.913 45 H 0.130 0.870 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.848 6.576 3.998 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.035 4.035 3 C -0.168 4.168 4 C -0.127 4.127 5 C -0.078 4.078 6 N -0.131 5.131 7 C -0.146 4.146 8 C 0.030 3.970 9 C -0.102 4.102 10 C -0.006 4.006 11 N -0.333 5.333 12 C 0.002 3.998 13 C -0.060 4.060 14 C -0.558 4.558 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.540 5.540 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.192 1.192 22 C 0.265 3.735 23 O -0.412 6.412 24 C -0.027 4.027 25 O -0.270 6.270 26 C -0.071 4.071 27 N -0.175 5.175 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.033 0.967 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.148 0.852 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -29.541 5.514 3.601 30.266 hybrid contribution 0.625 1.585 0.904 1.929 sum -28.915 7.100 4.505 30.113 Atomic orbital electron populations 1.20681 0.88754 1.03405 1.03052 1.21271 0.97148 0.88285 0.96825 1.21859 0.94242 0.99396 1.01348 1.21482 0.94696 0.97171 0.99343 1.20520 0.91018 0.95192 1.01086 1.66129 1.05168 1.06595 1.35248 1.24614 0.97226 0.98521 0.94219 1.22766 0.93703 0.97412 0.83118 1.24009 0.95429 0.95285 0.95495 1.21624 0.87531 0.94850 0.96644 1.47748 1.30057 1.43678 1.11799 1.21764 0.85332 0.98976 0.93688 1.19837 0.93373 0.95280 0.97499 1.20948 0.94321 1.11334 1.29165 0.90821 1.24974 0.95816 0.97414 0.95030 1.69903 1.02701 1.40103 1.41254 0.86762 0.78057 0.83831 0.80509 1.20237 1.21352 1.19212 1.20647 0.87824 0.82179 0.82893 1.90783 1.42263 1.36724 1.71424 1.22815 0.92864 0.89044 0.98019 1.88073 1.79924 1.38402 1.20590 1.22580 0.89136 0.97291 0.98073 1.67476 1.09193 1.29351 1.11463 0.90482 0.90530 0.90792 0.84526 0.84319 0.89147 0.87842 0.87252 0.88698 0.88290 0.89956 0.89991 0.90914 0.96689 0.96415 0.92666 0.89560 0.85209 0.82558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.16 36.01 0.37 -0.20 16 2 C 0.10 0.86 6.78 -82.57 -0.56 0.30 16 3 C -0.15 -1.05 9.73 -39.48 -0.38 -1.43 16 4 C -0.10 -0.76 8.87 -39.09 -0.35 -1.10 16 5 C 0.02 0.19 5.33 -83.63 -0.45 -0.26 16 6 N -0.41 -3.67 6.36 -180.51 -1.15 -4.82 16 7 C -0.02 -0.17 5.57 -7.28 -0.04 -0.21 16 8 C 0.07 0.72 1.29 -91.02 -0.12 0.61 16 9 C 0.03 0.20 5.98 -7.29 -0.04 0.16 16 10 C 0.12 1.47 5.85 -4.43 -0.03 1.44 16 11 N -0.60 -9.88 2.84 -174.72 -0.50 -10.37 16 12 C 0.12 2.46 5.20 -4.04 -0.02 2.44 16 13 C -0.02 -0.53 4.36 -27.88 -0.12 -0.65 16 14 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 15 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 18 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 22 C 0.48 8.01 7.57 -11.72 -0.09 7.92 16 23 O -0.53 -11.31 16.33 5.56 0.09 -11.22 16 24 C 0.05 0.61 6.70 35.74 0.24 0.85 16 25 O -0.35 -4.04 10.68 -35.23 -0.38 -4.41 16 26 C 0.09 0.86 10.20 -17.31 -0.18 0.68 16 27 N -0.47 -4.81 10.26 -9.30 -0.10 -4.90 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 31 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.14 0.81 7.22 -52.49 -0.38 0.43 16 33 H 0.09 0.73 7.66 -51.93 -0.40 0.33 16 34 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 35 H 0.11 0.76 8.11 -51.93 -0.42 0.33 16 36 H 0.09 0.69 7.27 -51.92 -0.38 0.31 16 37 H 0.10 1.14 7.83 -51.93 -0.41 0.73 16 38 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 39 H 0.08 1.78 7.29 -51.93 -0.38 1.40 16 40 H 0.07 1.33 7.97 -51.93 -0.41 0.92 16 41 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 42 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.09 0.82 7.99 -51.93 -0.41 0.40 16 45 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.16 1.32 7.60 -52.49 -0.40 0.92 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -35.41 374.18 -9.37 -44.78 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.89 Total: -2.34 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.20 Total: -2.75 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.97 Total: -47.30 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.29 Total: -15.63 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.41 -9.37 -44.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273571695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.615 kcal (2) G-P(sol) polarization free energy of solvation -35.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds