Wall clock time and date at job start Tue Mar 31 2020 16:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38268 * 119.53712 * 2 1 4 4 C 1.38495 * 119.23901 * 180.27788 * 3 2 1 5 5 C 1.39309 * 118.35943 * 359.46082 * 4 3 2 6 6 N 1.39713 * 120.49425 * 180.23612 * 5 4 3 7 7 C 1.47590 * 110.99655 * 132.66517 * 6 5 4 8 8 C 1.52889 * 87.78353 * 221.76335 * 7 6 5 9 9 C 1.47586 * 110.99877 * 36.55791 * 6 5 4 10 10 C 1.52452 * 114.26466 * 271.58210 * 8 7 6 11 11 N 1.46293 * 109.56618 * 272.35135 * 10 8 7 12 12 C 1.46500 * 118.72652 * 164.04292 * 11 10 8 13 13 C 1.53008 * 109.47026 * 90.00020 * 12 11 10 14 14 C 1.50697 * 109.47008 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99911 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00150 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00543 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99893 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47003 * 89.99884 * 18 16 14 20 20 H 1.48492 * 109.47632 * 210.00153 * 18 16 14 21 21 H 1.48500 * 109.47002 * 330.00306 * 18 16 14 22 22 C 1.33716 * 122.54791 * 344.02009 * 11 10 8 23 23 O 1.21276 * 118.36294 * 183.34681 * 22 11 10 24 24 C 1.50156 * 123.27682 * 3.37056 * 22 11 10 25 25 O 1.42564 * 114.25703 * 139.69739 * 8 7 6 26 26 C 1.38890 * 119.01495 * 0.56288 * 5 4 3 27 27 N 1.31823 * 120.65552 * 359.69779 * 26 5 4 28 28 H 1.08999 * 109.47335 * 89.99870 * 1 2 3 29 29 H 1.09001 * 109.47566 * 210.00072 * 1 2 3 30 30 H 1.09004 * 109.47076 * 329.99534 * 1 2 3 31 31 H 1.07993 * 120.38166 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.82036 * 179.72611 * 4 3 2 33 33 H 1.09005 * 113.50416 * 336.49382 * 7 6 5 34 34 H 1.08999 * 113.50365 * 107.03467 * 7 6 5 35 35 H 1.08994 * 113.50181 * 252.97271 * 9 6 5 36 36 H 1.09010 * 113.50345 * 23.44210 * 9 6 5 37 37 H 1.08995 * 109.45998 * 32.38052 * 10 8 7 38 38 H 1.09008 * 109.45365 * 152.34611 * 10 8 7 39 39 H 1.08995 * 109.47153 * 209.99746 * 12 11 10 40 40 H 1.09000 * 109.47237 * 330.00466 * 12 11 10 41 41 H 1.08995 * 109.46931 * 299.99862 * 13 12 11 42 42 H 1.09000 * 109.46749 * 60.00147 * 13 12 11 43 43 H 0.97001 * 120.00499 * 179.97438 * 17 16 14 44 44 H 1.09006 * 109.34690 * 102.47632 * 24 22 11 45 45 H 1.08997 * 109.34953 * 222.02238 * 24 22 11 46 46 H 1.07995 * 119.67552 * 179.68134 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2030 0.0000 4 6 3.5736 1.1958 -0.0059 5 6 4.2289 -0.0335 0.0000 6 7 5.6248 -0.0928 -0.0006 7 6 6.1142 -1.0430 1.0171 8 6 7.2012 -0.0241 1.3601 9 6 6.2007 0.9947 0.8142 10 6 8.4726 -0.1611 0.5300 11 7 9.3761 -1.1162 1.1717 12 6 10.4851 -1.6702 0.3910 13 6 11.7163 -0.7755 0.5480 14 6 12.8572 -1.3457 -0.2545 15 1 12.7180 -2.2550 -0.8203 16 6 14.0788 -0.7066 -0.2665 17 7 15.0744 -1.2039 -0.9673 18 14 14.3195 0.8666 0.7115 19 1 14.7874 0.5317 2.0805 20 1 15.3313 1.7189 0.0372 21 1 13.0308 1.5999 0.7945 22 6 9.2292 -1.5027 2.4433 23 8 10.0576 -2.2508 2.9175 24 6 8.0894 -1.0572 3.3134 25 8 7.4657 0.1031 2.7552 26 6 3.4741 -1.1994 -0.0006 27 7 2.1569 -1.1473 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6474 2.1375 0.0004 32 1 4.1317 2.1203 -0.0104 33 1 5.4066 -1.2135 1.8286 34 1 6.5042 -1.9693 0.5952 35 1 6.6633 1.7837 0.2214 36 1 5.5163 1.3811 1.5696 37 1 8.2180 -0.5167 -0.4683 38 1 8.9639 0.8092 0.4555 39 1 10.7166 -2.6730 0.7498 40 1 10.2016 -1.7168 -0.6604 41 1 11.4848 0.2274 0.1892 42 1 11.9998 -0.7288 1.5995 43 1 15.9338 -0.7540 -0.9760 44 1 7.3567 -1.8607 3.3882 45 1 8.4658 -0.8210 4.3087 46 1 3.9711 -2.1581 -0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273571695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:30 Heat of formation + Delta-G solvation = -13.722603 kcal Electronic energy + Delta-G solvation = -28348.411336 eV Core-core repulsion = 24431.818597 eV Total energy + Delta-G solvation = -3916.592739 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.99176 -41.42392 -40.25847 -38.07748 -37.06900 -35.11138 -33.93460 -33.33583 -32.48319 -30.80742 -29.07962 -28.13954 -27.65371 -26.30835 -25.86451 -24.11507 -23.32341 -22.49092 -21.36917 -19.55162 -19.23560 -19.09522 -18.20101 -17.75799 -17.36681 -17.04851 -16.74689 -16.43537 -16.30937 -15.94666 -15.63476 -15.41920 -15.06855 -14.91183 -14.74853 -14.68772 -14.62706 -14.31155 -13.97829 -13.79857 -13.53269 -13.35385 -13.28128 -13.04740 -12.95690 -12.79297 -12.71531 -12.33728 -12.10459 -11.93475 -11.74547 -11.55885 -11.39520 -11.25938 -10.82143 -10.63036 -10.53591 -10.41893 -9.78383 -9.20078 -8.34222 -6.38806 0.06027 0.28121 1.30581 1.32500 1.42341 1.43837 1.74304 2.25904 2.31045 2.57781 2.89354 3.00617 3.06025 3.15444 3.44647 3.52379 3.58731 3.69781 3.87677 3.93188 4.09742 4.19048 4.21515 4.28436 4.38554 4.41437 4.45726 4.49667 4.54004 4.57138 4.64822 4.70434 4.72678 4.80874 4.82758 4.88001 4.99708 5.08321 5.18442 5.29621 5.32408 5.40098 5.52444 5.58962 5.70081 5.96464 6.19473 6.36497 6.67238 7.00232 7.02063 7.25727 8.82035 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022584 B = 0.002504 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.528228 B =11181.652851 C =11490.976129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.087 3.913 3 C -0.145 4.145 4 C -0.101 4.101 5 C 0.013 3.987 6 N -0.421 5.421 7 C -0.012 4.012 8 C 0.067 3.933 9 C 0.035 3.965 10 C 0.113 3.887 11 N -0.600 5.600 12 C 0.134 3.866 13 C -0.011 4.011 14 C -0.531 4.531 15 H 0.039 0.961 16 C 0.009 3.991 17 N -0.945 5.945 18 Si 0.949 3.051 19 H -0.277 1.277 20 H -0.276 1.276 21 H -0.248 1.248 22 C 0.471 3.529 23 O -0.588 6.588 24 C 0.063 3.937 25 O -0.352 6.352 26 C 0.072 3.928 27 N -0.495 5.495 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.027 0.973 42 H -0.001 1.001 43 H 0.268 0.732 44 H 0.115 0.885 45 H 0.144 0.856 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.489 9.563 4.796 34.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.051 4.051 3 C -0.165 4.165 4 C -0.129 4.129 5 C -0.086 4.086 6 N -0.138 5.138 7 C -0.139 4.139 8 C 0.026 3.974 9 C -0.092 4.092 10 C -0.009 4.009 11 N -0.331 5.331 12 C 0.012 3.988 13 C -0.050 4.050 14 C -0.569 4.569 15 H 0.057 0.943 16 C -0.189 4.189 17 N -0.585 5.585 18 Si 0.772 3.228 19 H -0.203 1.203 20 H -0.201 1.201 21 H -0.171 1.171 22 C 0.259 3.741 23 O -0.469 6.469 24 C -0.015 4.015 25 O -0.269 6.269 26 C -0.088 4.088 27 N -0.205 5.205 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.184 0.816 32 H 0.178 0.822 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.142 0.858 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.045 0.955 42 H 0.017 0.983 43 H 0.077 0.923 44 H 0.133 0.867 45 H 0.161 0.839 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -32.231 8.524 4.384 33.626 hybrid contribution 1.396 0.586 0.579 1.621 sum -30.835 9.110 4.963 32.534 Atomic orbital electron populations 1.20754 0.87127 1.04181 1.03673 1.21796 0.98461 0.88383 0.96444 1.22197 0.94260 1.00086 0.99936 1.21794 0.95166 0.97405 0.98491 1.20553 0.90909 0.95536 1.01644 1.66168 1.05349 1.06903 1.35404 1.24564 0.96731 0.98074 0.94520 1.22782 0.92949 0.99538 0.82149 1.24062 0.94560 0.94878 0.95650 1.21868 0.87888 0.93718 0.97468 1.47750 1.29454 1.44082 1.11844 1.21326 0.85441 0.96976 0.95065 1.19681 0.93683 0.96332 0.95275 1.21270 0.96154 1.10346 1.29133 0.94255 1.25931 0.95480 1.01308 0.96170 1.70042 1.03427 1.42054 1.42995 0.85688 0.79033 0.79523 0.78540 1.20259 1.20118 1.17114 1.21644 0.88409 0.81083 0.82928 1.90757 1.44546 1.39146 1.72496 1.22805 0.91498 0.90159 0.97083 1.88088 1.79486 1.38151 1.21190 1.22650 0.89298 0.97823 0.98997 1.67469 1.09665 1.30766 1.12627 0.89850 0.91294 0.88494 0.81584 0.82245 0.88216 0.88416 0.85781 0.87334 0.87283 0.89808 0.92530 0.89314 0.95496 0.98266 0.92320 0.86704 0.83858 0.82676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.16 71.24 0.72 -0.18 16 2 C 0.09 1.30 6.78 42.56 0.29 1.59 16 3 C -0.14 -1.60 9.73 22.34 0.22 -1.39 16 4 C -0.10 -1.22 8.87 22.59 0.20 -1.02 16 5 C 0.01 0.20 5.33 38.30 0.20 0.40 16 6 N -0.42 -6.42 6.36 -725.78 -4.61 -11.04 16 7 C -0.01 -0.18 5.57 83.69 0.47 0.28 16 8 C 0.07 1.17 1.29 -11.05 -0.01 1.16 16 9 C 0.04 0.44 5.98 83.68 0.50 0.94 16 10 C 0.11 2.60 5.85 86.24 0.50 3.10 16 11 N -0.60 -19.32 2.84 -825.68 -2.34 -21.66 16 12 C 0.13 5.45 5.20 86.38 0.45 5.90 16 13 C -0.01 -0.56 4.36 29.85 0.13 -0.43 16 14 C -0.53 -31.35 9.66 25.60 0.25 -31.10 16 15 H 0.04 2.51 7.99 -2.91 -0.02 2.49 16 16 C 0.01 0.52 5.47 84.65 0.46 0.98 16 17 N -0.94 -60.05 13.96 21.45 0.30 -59.75 16 18 Si 0.95 45.84 27.47 68.60 1.88 47.73 16 19 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 22 C 0.47 15.48 7.57 87.65 0.66 16.14 16 23 O -0.59 -25.38 16.33 -3.02 -0.05 -25.42 16 24 C 0.06 1.36 6.70 71.07 0.48 1.83 16 25 O -0.35 -6.99 10.68 -148.98 -1.59 -8.58 16 26 C 0.07 1.31 10.20 84.85 0.87 2.18 16 27 N -0.50 -9.81 10.26 -183.35 -1.88 -11.70 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.40 8.08 -2.38 -0.02 0.39 16 31 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 32 H 0.16 1.19 7.22 -2.91 -0.02 1.17 16 33 H 0.10 1.37 7.66 -2.38 -0.02 1.36 16 34 H 0.10 1.62 8.11 -2.39 -0.02 1.60 16 35 H 0.12 1.22 8.11 -2.39 -0.02 1.20 16 36 H 0.11 1.12 7.27 -2.38 -0.02 1.10 16 37 H 0.11 2.30 7.83 -2.39 -0.02 2.28 16 38 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.06 2.58 7.29 -2.39 -0.02 2.56 16 40 H 0.09 3.27 7.97 -2.39 -0.02 3.25 16 41 H 0.03 1.25 7.20 -2.39 -0.02 1.23 16 42 H 0.00 -0.06 7.57 -2.39 -0.02 -0.07 16 43 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 44 H 0.12 1.86 7.99 -2.38 -0.02 1.84 16 45 H 0.14 2.74 8.14 -2.39 -0.02 2.72 16 46 H 0.16 2.62 7.60 -2.91 -0.02 2.60 16 Total: -1.00 -79.37 374.18 -0.98 -80.36 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.92 Total: 9.67 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 6.39 Total: 0.39 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -8.54 Total: -104.14 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -1.64 Total: -34.00 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.88 Total: 47.73 kcal Total: -79.37 -0.98 -80.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273571695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.633 kcal (2) G-P(sol) polarization free energy of solvation -79.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds