Wall clock time and date at job start Tue Mar 31 2020 16:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37916 * 119.58132 * 2 1 4 4 C 1.39451 * 119.06855 * 180.02562 * 3 2 1 5 5 N 1.39172 * 120.86898 * 180.02562 * 4 3 2 6 6 C 1.47584 * 110.99519 * 312.35027 * 5 4 3 7 7 C 1.52959 * 87.80531 * 221.69164 * 6 5 4 8 8 C 1.47572 * 111.00253 * 216.25828 * 5 4 3 9 9 C 1.52665 * 114.01832 * 139.33472 * 7 6 5 10 10 O 1.43390 * 108.27468 * 177.91332 * 9 7 6 11 11 C 1.42809 * 113.35968 * 294.60334 * 10 9 7 12 12 C 1.50288 * 110.53918 * 51.36551 * 11 10 9 13 13 O 1.21275 * 118.99535 * 161.43307 * 12 11 10 14 14 N 1.34310 * 122.00693 * 341.41020 * 12 11 10 15 15 C 1.46496 * 119.40646 * 182.06717 * 14 12 11 16 16 C 1.53005 * 109.47464 * 269.98360 * 15 14 12 17 17 C 1.50699 * 109.47344 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99596 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99722 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00414 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00017 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47030 * 59.99622 * 21 19 17 23 23 H 1.48498 * 109.47570 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46902 * 299.99963 * 21 19 17 25 25 C 1.39497 * 118.26880 * 359.73378 * 4 3 2 26 26 C 1.37876 * 119.06856 * 0.51079 * 25 4 3 27 27 N 1.31983 * 119.57830 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47179 * 270.01898 * 1 2 3 29 29 H 1.09001 * 109.46758 * 30.01866 * 1 2 3 30 30 H 1.09000 * 109.47233 * 150.01416 * 1 2 3 31 31 H 1.08005 * 120.46539 * 0.02573 * 3 2 1 32 32 H 1.08995 * 113.49585 * 336.43136 * 6 5 4 33 33 H 1.08998 * 113.49637 * 106.95864 * 6 5 4 34 34 H 1.08997 * 113.49736 * 253.03227 * 8 5 4 35 35 H 1.09000 * 113.49754 * 23.49693 * 8 5 4 36 36 H 1.09001 * 109.71024 * 297.62445 * 9 7 6 37 37 H 1.09000 * 109.70524 * 58.24096 * 9 7 6 38 38 H 1.08998 * 109.26504 * 291.08765 * 11 10 9 39 39 H 1.09004 * 109.26502 * 171.63914 * 11 10 9 40 40 H 1.09006 * 109.47184 * 29.97823 * 15 14 12 41 41 H 1.08994 * 109.47268 * 149.97938 * 15 14 12 42 42 H 1.09006 * 109.46481 * 299.99893 * 16 15 14 43 43 H 1.09003 * 109.47030 * 59.99552 * 16 15 14 44 44 H 0.96996 * 120.00385 * 180.02562 * 20 19 17 45 45 H 1.08003 * 120.46841 * 180.28751 * 25 4 3 46 46 H 1.07997 * 119.58174 * 179.75140 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1994 0.0000 4 6 3.5822 1.1869 -0.0005 5 7 4.3070 2.3750 0.0000 6 6 3.7895 3.3105 -1.0175 7 6 5.2414 3.6486 -1.3600 8 6 5.5305 2.2486 -0.8154 9 6 5.5081 3.7994 -2.8556 10 8 6.8841 4.1616 -3.0327 11 6 7.2048 5.4465 -2.4982 12 6 6.7361 5.5572 -1.0746 13 8 7.2089 6.4201 -0.3655 14 7 5.8094 4.7300 -0.5638 15 6 5.3610 4.9179 0.8182 16 6 6.2473 4.0980 1.7580 17 6 5.7856 4.2907 3.1795 18 1 4.9444 4.9340 3.3914 19 6 6.4371 3.6458 4.2093 20 7 7.4612 2.8621 3.9511 21 14 5.8653 3.8852 5.9714 22 1 4.4562 3.4344 6.1001 23 1 6.7247 3.0884 6.8834 24 1 5.9599 5.3228 6.3315 25 6 4.2319 -0.0475 0.0046 26 6 3.4775 -1.2016 -0.0007 27 7 2.1584 -1.1478 0.0005 28 1 -0.3633 0.0003 1.0276 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5136 31 1 1.6485 2.1352 0.0004 32 1 3.2549 2.8174 -1.8293 33 1 3.2360 4.1492 -0.5952 34 1 6.4437 2.1928 -0.2229 35 1 5.4699 1.4659 -1.5715 36 1 5.3084 2.8549 -3.3617 37 1 4.8673 4.5797 -3.2664 38 1 6.7193 6.2167 -3.0976 39 1 8.2845 5.5915 -2.5337 40 1 5.4300 5.9732 1.0823 41 1 4.3270 4.5865 0.9128 42 1 6.1783 3.0427 1.4938 43 1 7.2815 4.4294 1.6633 44 1 7.9193 2.4081 4.6756 45 1 5.3107 -0.0986 0.0091 46 1 3.9719 -2.1617 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273583165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:46 Heat of formation + Delta-G solvation = 16.490388 kcal Electronic energy + Delta-G solvation = -29688.974205 eV Core-core repulsion = 25773.691600 eV Total energy + Delta-G solvation = -3915.282606 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03251 -40.14593 -38.84239 -37.51131 -35.03324 -33.18030 -32.74974 -32.03672 -30.04879 -29.45803 -28.01610 -27.28245 -26.36142 -25.46794 -24.19297 -22.83189 -21.67261 -21.05056 -20.56324 -18.32190 -17.69451 -17.31056 -16.80494 -16.49036 -16.05890 -15.60598 -15.56658 -15.40875 -14.79284 -14.57344 -14.36703 -14.30913 -14.16909 -13.70770 -13.63039 -13.35277 -12.99762 -12.71563 -12.52012 -12.36142 -12.33522 -12.20366 -12.01713 -11.49502 -11.39902 -11.27752 -10.89773 -10.85683 -10.72467 -10.56951 -10.34458 -9.82370 -9.70474 -9.47757 -9.31698 -8.97997 -8.91826 -8.40274 -8.25401 -8.17080 -5.93346 -3.93799 1.18340 1.29884 2.73579 3.01943 3.37225 3.40978 3.43412 3.45143 3.63008 3.90509 4.21930 4.27238 4.34042 4.43151 4.52029 4.59340 4.72629 4.94924 5.02368 5.09661 5.14363 5.18661 5.20213 5.23840 5.33581 5.43038 5.44515 5.49826 5.51146 5.58571 5.59317 5.77526 5.86921 5.98292 6.06021 6.16400 6.49626 6.53411 6.58410 6.63027 6.80758 6.98445 7.09297 7.62657 7.76993 7.99710 8.08071 8.08559 8.35651 8.49890 9.11234 9.68128 11.18365 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.007320 B = 0.005903 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3824.285777 B = 4742.425130 C = 7638.485339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.142 3.858 3 C -0.199 4.199 4 C 0.134 3.866 5 N -0.400 5.400 6 C 0.002 3.998 7 C 0.112 3.888 8 C 0.000 4.000 9 C 0.067 3.933 10 O -0.366 6.366 11 C 0.048 3.952 12 C 0.482 3.518 13 O -0.528 6.528 14 N -0.572 5.572 15 C 0.118 3.882 16 C 0.020 3.980 17 C -0.510 4.510 18 H 0.051 0.949 19 C 0.060 3.940 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.206 4.206 26 C 0.122 3.878 27 N -0.509 5.509 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.129 0.871 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.032 0.968 43 H 0.012 0.988 44 H 0.259 0.741 45 H 0.137 0.863 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 -3.543 -17.797 20.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.004 3.996 3 C -0.222 4.222 4 C 0.028 3.972 5 N -0.113 5.113 6 C -0.126 4.126 7 C 0.023 3.977 8 C -0.128 4.128 9 C -0.010 4.010 10 O -0.283 6.283 11 C -0.032 4.032 12 C 0.269 3.731 13 O -0.405 6.405 14 N -0.303 5.303 15 C -0.002 4.002 16 C -0.018 4.018 17 C -0.549 4.549 18 H 0.069 0.931 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.228 4.228 26 C -0.034 4.034 27 N -0.221 5.221 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.151 0.849 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.147 0.853 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.030 0.970 44 H 0.069 0.931 45 H 0.155 0.845 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.783 -3.823 -16.696 19.725 hybrid contribution 0.064 0.621 0.880 1.079 sum -9.719 -3.202 -15.816 18.838 Atomic orbital electron populations 1.20684 0.89056 1.03077 1.03086 1.21058 0.96744 0.88034 0.93721 1.21636 0.92928 0.99659 1.07930 1.19918 0.92981 0.91500 0.92848 1.65962 1.04255 1.06360 1.34718 1.24297 0.96501 0.97746 0.94076 1.21659 0.94560 0.89236 0.92259 1.24544 0.96320 0.96020 0.95931 1.22863 0.83831 1.02469 0.91885 1.88154 1.26089 1.34719 1.79387 1.22823 1.03755 0.86278 0.90296 1.20956 0.79798 0.82001 0.90325 1.90771 1.54783 1.34973 1.59981 1.47478 1.39852 1.28364 1.14641 1.21994 0.99554 1.01323 0.77321 1.19361 0.94272 0.95621 0.92523 1.20995 1.14837 1.27557 0.91522 0.93055 1.24921 0.95023 0.95324 0.98818 1.69948 1.21065 1.30352 1.32056 0.86709 0.78537 0.78145 0.84896 1.20387 1.21356 1.20280 1.22025 1.01775 0.92241 1.06796 1.22515 0.89200 0.98011 0.93690 1.67536 1.10000 1.29122 1.15414 0.90436 0.90912 0.90646 0.84899 0.89205 0.87925 0.87012 0.89458 0.86717 0.91302 0.89712 0.85312 0.91410 0.90789 0.94990 0.96983 0.93140 0.84482 0.82813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.17 36.00 0.37 -0.58 16 2 C 0.14 1.81 6.78 -82.65 -0.56 1.25 16 3 C -0.20 -2.59 8.74 -39.25 -0.34 -2.93 16 4 C 0.13 1.93 5.34 -83.61 -0.45 1.48 16 5 N -0.40 -6.06 4.45 -180.36 -0.80 -6.87 16 6 C 0.00 0.02 5.37 -7.30 -0.04 -0.02 16 7 C 0.11 1.43 1.67 -132.98 -0.22 1.21 16 8 C 0.00 0.00 5.09 -7.30 -0.04 -0.04 16 9 C 0.07 0.63 6.14 36.99 0.23 0.86 16 10 O -0.37 -4.31 10.84 -35.23 -0.38 -4.69 16 11 C 0.05 0.59 6.93 35.81 0.25 0.84 16 12 C 0.48 8.41 7.64 -11.39 -0.09 8.32 16 13 O -0.53 -11.60 16.49 5.56 0.09 -11.50 16 14 N -0.57 -9.76 2.69 -160.35 -0.43 -10.19 16 15 C 0.12 2.48 4.49 -4.04 -0.02 2.46 16 16 C 0.02 0.52 5.02 -27.88 -0.14 0.38 16 17 C -0.51 -14.74 9.11 -34.44 -0.31 -15.05 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -27.49 13.29 55.43 0.74 -26.76 16 21 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.21 -2.85 8.84 -39.25 -0.35 -3.20 16 26 C 0.12 1.60 11.17 -17.61 -0.20 1.40 16 27 N -0.51 -7.13 10.27 -9.57 -0.10 -7.23 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.13 1.50 7.67 -52.48 -0.40 1.10 16 32 H 0.09 0.76 7.61 -51.93 -0.40 0.37 16 33 H 0.10 1.20 7.04 -51.93 -0.37 0.84 16 34 H 0.11 1.96 6.83 -51.93 -0.35 1.61 16 35 H 0.09 0.95 7.02 -51.93 -0.36 0.59 16 36 H 0.11 0.79 7.85 -51.93 -0.41 0.38 16 37 H 0.07 0.52 8.13 -51.93 -0.42 0.09 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.07 1.55 7.36 -51.93 -0.38 1.16 16 41 H 0.07 1.46 5.57 -51.93 -0.29 1.18 16 42 H 0.03 0.86 5.34 -51.93 -0.28 0.58 16 43 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.14 1.83 7.22 -52.48 -0.38 1.45 16 46 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -36.34 367.37 -8.91 -45.25 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.54 Total: 0.97 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.01 Total: -1.94 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.60 Total: -51.05 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.29 Total: -16.19 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.34 -8.91 -45.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273583165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.741 kcal (2) G-P(sol) polarization free energy of solvation -36.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds