Wall clock time and date at job start Tue Mar 31 2020 16:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37916 * 119.58132 * 2 1 4 4 C 1.39451 * 119.06855 * 180.02562 * 3 2 1 5 5 N 1.39172 * 120.86898 * 180.02562 * 4 3 2 6 6 C 1.47584 * 110.99519 * 312.35027 * 5 4 3 7 7 C 1.52959 * 87.80531 * 221.69164 * 6 5 4 8 8 C 1.47572 * 111.00253 * 216.25828 * 5 4 3 9 9 C 1.52665 * 114.01832 * 139.33472 * 7 6 5 10 10 O 1.43390 * 108.27468 * 177.91332 * 9 7 6 11 11 C 1.42809 * 113.35968 * 294.60334 * 10 9 7 12 12 C 1.50288 * 110.53918 * 51.36551 * 11 10 9 13 13 O 1.21275 * 118.99535 * 161.43307 * 12 11 10 14 14 N 1.34310 * 122.00693 * 341.41020 * 12 11 10 15 15 C 1.46496 * 119.40646 * 182.06717 * 14 12 11 16 16 C 1.53005 * 109.47464 * 269.98360 * 15 14 12 17 17 C 1.50699 * 109.47344 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99596 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99722 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00414 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00017 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47030 * 59.99622 * 21 19 17 23 23 H 1.48498 * 109.47570 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46902 * 299.99963 * 21 19 17 25 25 C 1.39497 * 118.26880 * 359.73378 * 4 3 2 26 26 C 1.37876 * 119.06856 * 0.51079 * 25 4 3 27 27 N 1.31983 * 119.57830 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47179 * 270.01898 * 1 2 3 29 29 H 1.09001 * 109.46758 * 30.01866 * 1 2 3 30 30 H 1.09000 * 109.47233 * 150.01416 * 1 2 3 31 31 H 1.08005 * 120.46539 * 0.02573 * 3 2 1 32 32 H 1.08995 * 113.49585 * 336.43136 * 6 5 4 33 33 H 1.08998 * 113.49637 * 106.95864 * 6 5 4 34 34 H 1.08997 * 113.49736 * 253.03227 * 8 5 4 35 35 H 1.09000 * 113.49754 * 23.49693 * 8 5 4 36 36 H 1.09001 * 109.71024 * 297.62445 * 9 7 6 37 37 H 1.09000 * 109.70524 * 58.24096 * 9 7 6 38 38 H 1.08998 * 109.26504 * 291.08765 * 11 10 9 39 39 H 1.09004 * 109.26502 * 171.63914 * 11 10 9 40 40 H 1.09006 * 109.47184 * 29.97823 * 15 14 12 41 41 H 1.08994 * 109.47268 * 149.97938 * 15 14 12 42 42 H 1.09006 * 109.46481 * 299.99893 * 16 15 14 43 43 H 1.09003 * 109.47030 * 59.99552 * 16 15 14 44 44 H 0.96996 * 120.00385 * 180.02562 * 20 19 17 45 45 H 1.08003 * 120.46841 * 180.28751 * 25 4 3 46 46 H 1.07997 * 119.58174 * 179.75140 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1994 0.0000 4 6 3.5822 1.1869 -0.0005 5 7 4.3070 2.3750 0.0000 6 6 3.7895 3.3105 -1.0175 7 6 5.2414 3.6486 -1.3600 8 6 5.5305 2.2486 -0.8154 9 6 5.5081 3.7994 -2.8556 10 8 6.8841 4.1616 -3.0327 11 6 7.2048 5.4465 -2.4982 12 6 6.7361 5.5572 -1.0746 13 8 7.2089 6.4201 -0.3655 14 7 5.8094 4.7300 -0.5638 15 6 5.3610 4.9179 0.8182 16 6 6.2473 4.0980 1.7580 17 6 5.7856 4.2907 3.1795 18 1 4.9444 4.9340 3.3914 19 6 6.4371 3.6458 4.2093 20 7 7.4612 2.8621 3.9511 21 14 5.8653 3.8852 5.9714 22 1 4.4562 3.4344 6.1001 23 1 6.7247 3.0884 6.8834 24 1 5.9599 5.3228 6.3315 25 6 4.2319 -0.0475 0.0046 26 6 3.4775 -1.2016 -0.0007 27 7 2.1584 -1.1478 0.0005 28 1 -0.3633 0.0003 1.0276 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5136 31 1 1.6485 2.1352 0.0004 32 1 3.2549 2.8174 -1.8293 33 1 3.2360 4.1492 -0.5952 34 1 6.4437 2.1928 -0.2229 35 1 5.4699 1.4659 -1.5715 36 1 5.3084 2.8549 -3.3617 37 1 4.8673 4.5797 -3.2664 38 1 6.7193 6.2167 -3.0976 39 1 8.2845 5.5915 -2.5337 40 1 5.4300 5.9732 1.0823 41 1 4.3270 4.5865 0.9128 42 1 6.1783 3.0427 1.4938 43 1 7.2815 4.4294 1.6633 44 1 7.9193 2.4081 4.6756 45 1 5.3107 -0.0986 0.0091 46 1 3.9719 -2.1617 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273583165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:45 Heat of formation + Delta-G solvation = -10.536538 kcal Electronic energy + Delta-G solvation = -29690.146181 eV Core-core repulsion = 25773.691600 eV Total energy + Delta-G solvation = -3916.454581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.11703 -41.25312 -39.99451 -38.59157 -36.53021 -35.09420 -33.77251 -33.27505 -31.80032 -30.47695 -28.94166 -28.61087 -27.39476 -26.66758 -25.81713 -23.86911 -22.93162 -22.77271 -21.61148 -19.51164 -18.92605 -18.51988 -18.27312 -17.67424 -17.45767 -16.82834 -16.66261 -16.51197 -16.41679 -15.87027 -15.56897 -15.39915 -15.25111 -14.87365 -14.76714 -14.49628 -14.32514 -14.23088 -13.85403 -13.72858 -13.35645 -13.18191 -13.07231 -13.00554 -12.83818 -12.69253 -12.48865 -12.37526 -12.08071 -11.85359 -11.73247 -11.53161 -11.35328 -11.30159 -10.54543 -10.51796 -10.37836 -9.89015 -9.71405 -9.41667 -8.21729 -6.31013 0.20094 0.28172 1.32505 1.36605 1.39396 1.43936 1.78481 2.37622 2.52764 2.67714 2.90623 3.12173 3.19357 3.27493 3.41085 3.47464 3.64758 3.78479 4.10610 4.12347 4.15008 4.24503 4.25585 4.31811 4.41757 4.48358 4.50771 4.57937 4.60463 4.65980 4.69339 4.72206 4.80769 4.82552 4.89001 5.03536 5.03762 5.19326 5.24360 5.49257 5.50375 5.65713 5.69540 5.76166 5.89406 6.08709 6.21255 6.43185 6.83178 7.03436 7.10042 7.35978 8.90102 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.007320 B = 0.005903 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3824.285777 B = 4742.425130 C = 7638.485339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.136 3.864 3 C -0.203 4.203 4 C 0.124 3.876 5 N -0.442 5.442 6 C 0.016 3.984 7 C 0.105 3.895 8 C 0.004 3.996 9 C 0.070 3.930 10 O -0.373 6.373 11 C 0.062 3.938 12 C 0.471 3.529 13 O -0.587 6.587 14 N -0.575 5.575 15 C 0.139 3.861 16 C 0.037 3.963 17 C -0.532 4.532 18 H 0.055 0.945 19 C 0.003 3.997 20 N -0.932 5.932 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.269 1.269 25 C -0.223 4.223 26 C 0.120 3.880 27 N -0.529 5.529 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.150 0.850 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.120 0.880 36 H 0.150 0.850 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.135 0.865 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.022 0.978 43 H -0.042 1.042 44 H 0.261 0.739 45 H 0.131 0.869 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.490 -3.742 -19.755 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.001 4.001 3 C -0.225 4.225 4 C 0.017 3.983 5 N -0.155 5.155 6 C -0.110 4.110 7 C 0.017 3.983 8 C -0.124 4.124 9 C -0.007 4.007 10 O -0.290 6.290 11 C -0.017 4.017 12 C 0.260 3.740 13 O -0.468 6.468 14 N -0.305 5.305 15 C 0.017 3.983 16 C -0.001 4.001 17 C -0.571 4.571 18 H 0.074 0.926 19 C -0.194 4.194 20 N -0.572 5.572 21 Si 0.784 3.216 22 H -0.191 1.191 23 H -0.208 1.208 24 H -0.194 1.194 25 C -0.246 4.246 26 C -0.036 4.036 27 N -0.241 5.241 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.079 0.921 35 H 0.138 0.862 36 H 0.168 0.832 37 H 0.120 0.880 38 H 0.142 0.858 39 H 0.153 0.847 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.040 0.960 43 H -0.024 1.024 44 H 0.069 0.931 45 H 0.149 0.851 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.404 -4.041 -18.699 22.800 hybrid contribution 0.885 0.621 1.506 1.854 sum -11.519 -3.421 -17.193 20.976 Atomic orbital electron populations 1.20777 0.86655 1.04568 1.03657 1.21628 0.98381 0.87636 0.92478 1.21825 0.92329 1.00534 1.07834 1.20075 0.93690 0.91272 0.93246 1.65930 1.05241 1.07600 1.36712 1.24347 0.95479 0.96989 0.94214 1.22059 0.95433 0.86831 0.93943 1.24486 0.94057 0.97976 0.95846 1.23206 0.83096 1.05446 0.88965 1.88162 1.27825 1.34393 1.78636 1.22799 1.04401 0.87848 0.86660 1.22133 0.78687 0.80808 0.92358 1.90735 1.56610 1.37473 1.61985 1.47462 1.40051 1.29596 1.13392 1.21389 0.99070 0.98643 0.79191 1.19113 0.92097 0.95618 0.93289 1.21455 1.15049 1.27513 0.93083 0.92645 1.25867 0.95018 0.94880 1.03666 1.70099 1.22300 1.31292 1.33500 0.85594 0.78512 0.78431 0.79080 1.19094 1.20780 1.19405 1.22083 1.01636 0.92800 1.08080 1.22848 0.89200 0.98663 0.92891 1.67625 1.10280 1.29927 1.16255 0.90157 0.88478 0.90162 0.83191 0.85087 0.88080 0.92072 0.86218 0.83236 0.88027 0.85776 0.84694 0.93813 0.89206 0.96008 1.02370 0.93054 0.85134 0.80819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.58 10.17 71.23 0.72 -0.86 16 2 C 0.14 3.20 6.78 42.46 0.29 3.49 16 3 C -0.20 -4.85 8.74 22.49 0.20 -4.65 16 4 C 0.12 3.44 5.34 38.57 0.21 3.65 16 5 N -0.44 -13.16 4.45 -724.54 -3.23 -16.39 16 6 C 0.02 0.33 5.37 83.68 0.45 0.78 16 7 C 0.10 2.51 1.67 3.81 0.01 2.51 16 8 C 0.00 0.12 5.09 83.68 0.43 0.55 16 9 C 0.07 1.03 6.14 71.87 0.44 1.47 16 10 O -0.37 -7.64 10.84 -148.98 -1.61 -9.26 16 11 C 0.06 1.40 6.93 71.11 0.49 1.89 16 12 C 0.47 16.65 7.64 87.60 0.67 17.32 16 13 O -0.59 -27.13 16.49 -3.02 -0.05 -27.18 16 14 N -0.57 -19.88 2.69 -779.89 -2.10 -21.98 16 15 C 0.14 6.10 4.49 86.38 0.39 6.48 16 16 C 0.04 2.04 5.02 29.85 0.15 2.19 16 17 C -0.53 -31.94 9.11 25.60 0.23 -31.71 16 18 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 19 C 0.00 0.20 5.46 84.65 0.46 0.66 16 20 N -0.93 -59.53 13.29 21.45 0.28 -59.25 16 21 Si 0.96 46.82 29.54 68.60 2.03 48.85 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 25 C -0.22 -6.16 8.84 22.49 0.20 -5.96 16 26 C 0.12 3.05 11.17 84.58 0.94 4.00 16 27 N -0.53 -14.10 10.27 -184.20 -1.89 -15.99 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.06 8.08 -2.39 -0.02 1.04 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.15 2.95 7.67 -2.91 -0.02 2.93 16 32 H 0.13 1.60 7.61 -2.39 -0.02 1.58 16 33 H 0.10 2.11 7.04 -2.39 -0.02 2.09 16 34 H 0.06 2.31 6.83 -2.39 -0.02 2.29 16 35 H 0.12 2.43 7.02 -2.39 -0.02 2.41 16 36 H 0.15 1.22 7.85 -2.39 -0.02 1.21 16 37 H 0.10 0.93 8.13 -2.39 -0.02 0.92 16 38 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.14 2.90 8.14 -2.38 -0.02 2.88 16 40 H 0.04 2.10 7.36 -2.38 -0.02 2.09 16 41 H 0.09 3.62 5.57 -2.39 -0.01 3.60 16 42 H 0.02 1.25 5.34 -2.38 -0.01 1.23 16 43 H -0.04 -2.77 8.14 -2.39 -0.02 -2.79 16 44 H 0.26 15.75 8.31 -92.71 -0.77 14.97 16 45 H 0.13 3.64 7.22 -2.91 -0.02 3.62 16 46 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -85.55 367.37 0.70 -84.84 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.99 Total: 14.54 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 6.28 Total: 1.81 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -6.93 Total: -113.60 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -1.66 Total: -36.43 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -85.55 0.70 -84.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273583165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.308 kcal (2) G-P(sol) polarization free energy of solvation -85.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds