Wall clock time and date at job start Tue Mar 31 2020 16:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37916 * 119.58132 * 2 1 4 4 C 1.39451 * 119.06855 * 180.02562 * 3 2 1 5 5 N 1.39172 * 120.86898 * 180.02562 * 4 3 2 6 6 C 1.47595 * 110.99486 * 312.36873 * 5 4 3 7 7 C 1.52899 * 87.77933 * 221.75781 * 6 5 4 8 8 C 1.47586 * 111.00191 * 216.25876 * 5 4 3 9 9 C 1.52442 * 114.26618 * 271.57906 * 7 6 5 10 10 N 1.46298 * 109.56753 * 272.35229 * 9 7 6 11 11 C 1.46505 * 118.72563 * 164.04224 * 10 9 7 12 12 C 1.53001 * 109.46946 * 90.00255 * 11 10 9 13 13 C 1.50698 * 109.46796 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00411 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99805 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00029 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47107 * 60.00372 * 17 15 13 19 19 H 1.48493 * 109.46927 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47155 * 300.00317 * 17 15 13 21 21 C 1.33711 * 122.54653 * 344.02666 * 10 9 7 22 22 O 1.21277 * 118.36315 * 183.34526 * 21 10 9 23 23 C 1.50157 * 123.27756 * 3.36166 * 21 10 9 24 24 O 1.42564 * 114.25423 * 139.69293 * 7 6 5 25 25 C 1.39497 * 118.26880 * 359.73378 * 4 3 2 26 26 C 1.37876 * 119.06856 * 0.51079 * 25 4 3 27 27 N 1.31983 * 119.57830 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.46812 * 270.02131 * 1 2 3 29 29 H 1.09003 * 109.47329 * 30.01365 * 1 2 3 30 30 H 1.08995 * 109.47612 * 150.02246 * 1 2 3 31 31 H 1.08000 * 120.46701 * 0.03036 * 3 2 1 32 32 H 1.08994 * 113.50096 * 336.48369 * 6 5 4 33 33 H 1.08997 * 113.50397 * 107.03257 * 6 5 4 34 34 H 1.09004 * 113.49684 * 252.96873 * 8 5 4 35 35 H 1.09001 * 113.50211 * 23.50363 * 8 5 4 36 36 H 1.08998 * 109.45746 * 32.38515 * 9 7 6 37 37 H 1.08998 * 109.45688 * 152.34657 * 9 7 6 38 38 H 1.08997 * 109.47020 * 210.00233 * 11 10 9 39 39 H 1.08999 * 109.47093 * 330.00183 * 11 10 9 40 40 H 1.08997 * 109.47243 * 299.99841 * 12 11 10 41 41 H 1.08994 * 109.46860 * 59.99933 * 12 11 10 42 42 H 0.97003 * 119.99743 * 180.02562 * 16 15 13 43 43 H 1.09003 * 109.34775 * 102.48409 * 23 21 10 44 44 H 1.09000 * 109.34671 * 222.18128 * 23 21 10 45 45 H 1.08000 * 120.47067 * 180.27937 * 25 4 3 46 46 H 1.07997 * 119.58174 * 179.75140 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1994 0.0000 4 6 3.5822 1.1869 -0.0005 5 7 4.3070 2.3750 0.0000 6 6 3.7892 3.3107 -1.0173 7 6 5.2406 3.6471 -1.3608 8 6 5.5306 2.2486 -0.8155 9 6 5.8346 4.7794 -0.5308 10 7 5.5435 6.0618 -1.1720 11 6 5.7007 7.2913 -0.3910 12 6 7.1291 7.8164 -0.5486 13 6 7.2905 9.0815 0.2543 14 1 6.4577 9.4717 0.8206 15 6 8.5016 9.7403 0.2667 16 7 9.5158 9.2649 -0.4225 17 14 8.7020 11.3080 1.2624 18 1 8.4344 11.0222 2.6950 19 1 10.0882 11.8178 1.1094 20 1 7.7423 12.3306 0.7741 21 6 5.1399 6.1551 -2.4434 22 8 4.9791 7.2598 -2.9171 23 6 4.8755 4.9604 -3.3137 24 8 5.4928 3.7964 -2.7560 25 6 4.2319 -0.0475 0.0046 26 6 3.4775 -1.2016 -0.0007 27 7 2.1584 -1.1478 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8899 -0.5140 30 1 -0.3634 -0.8901 -0.5134 31 1 1.6486 2.1352 0.0005 32 1 3.2536 2.8179 -1.8286 33 1 3.2368 4.1501 -0.5948 34 1 6.4439 2.1939 -0.2230 35 1 5.4700 1.4660 -1.5717 36 1 5.3979 4.7654 0.4678 37 1 6.9141 4.6477 -0.4568 38 1 4.9960 8.0418 -0.7493 39 1 5.5046 7.0814 0.6604 40 1 7.8337 7.0660 -0.1904 41 1 7.3250 8.0263 -1.6000 42 1 10.3680 9.7282 -0.4135 43 1 3.8001 4.7986 -3.3880 44 1 5.2831 5.1409 -4.3083 45 1 5.3107 -0.0987 0.0089 46 1 3.9719 -2.1617 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273583196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:35 Heat of formation + Delta-G solvation = 8.970845 kcal Electronic energy + Delta-G solvation = -28355.895562 eV Core-core repulsion = 24440.286885 eV Total energy + Delta-G solvation = -3915.608677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.22522 -40.42156 -39.24918 -37.08704 -35.50663 -33.37644 -33.07701 -32.65904 -30.21971 -29.22370 -28.28748 -27.42286 -26.54765 -25.74081 -24.57665 -23.22714 -22.10877 -21.24525 -20.18507 -18.46858 -18.19430 -17.32034 -17.02046 -16.56858 -16.10434 -15.91961 -15.77662 -15.51039 -15.25194 -14.76864 -14.57109 -14.47841 -14.10400 -13.90388 -13.74105 -13.59872 -13.16335 -13.13617 -12.74028 -12.64503 -12.52235 -12.49267 -12.21166 -11.83062 -11.70114 -11.34859 -11.19311 -10.92558 -10.82362 -10.71683 -10.41017 -9.92768 -9.87714 -9.84193 -9.39796 -9.31851 -9.07660 -8.98740 -8.36687 -8.18343 -6.01943 -4.05348 0.77292 0.84983 2.78326 2.90911 3.23495 3.29669 3.32894 3.37287 3.40122 3.57658 3.84227 3.97685 4.11935 4.16193 4.36924 4.45370 4.62515 4.67507 4.70271 4.82170 4.93077 5.04206 5.06672 5.11236 5.18056 5.22165 5.23483 5.30009 5.34150 5.37780 5.40523 5.44618 5.52628 5.71043 5.71871 5.99915 6.02426 6.19089 6.45263 6.54189 6.58007 6.73984 6.83132 7.54847 7.67470 7.69544 7.87187 7.97546 8.31835 8.44119 9.00800 9.58440 11.09478 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.002452 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.797458 B =11417.880341 C =11733.667729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.146 3.854 3 C -0.195 4.195 4 C 0.127 3.873 5 N -0.421 5.421 6 C -0.015 4.015 7 C 0.072 3.928 8 C 0.027 3.973 9 C 0.118 3.882 10 N -0.597 5.597 11 C 0.114 3.886 12 C 0.015 3.985 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.479 3.521 22 O -0.536 6.536 23 C 0.052 3.948 24 O -0.351 6.351 25 C -0.208 4.208 26 C 0.125 3.875 27 N -0.504 5.504 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.015 0.985 41 H 0.022 0.978 42 H 0.262 0.738 43 H 0.085 0.915 44 H 0.130 0.870 45 H 0.139 0.861 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.273 -21.978 -0.956 26.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.009 3.991 3 C -0.218 4.218 4 C 0.021 3.979 5 N -0.137 5.137 6 C -0.142 4.142 7 C 0.030 3.970 8 C -0.100 4.100 9 C -0.005 4.005 10 N -0.329 5.329 11 C -0.006 4.006 12 C -0.023 4.023 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.265 3.735 22 O -0.413 6.413 23 C -0.027 4.027 24 O -0.269 6.269 25 C -0.231 4.231 26 C -0.032 4.032 27 N -0.215 5.215 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.154 0.846 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.034 0.966 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.148 0.852 45 H 0.157 0.843 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.482 -22.028 -0.658 26.370 hybrid contribution 0.665 1.491 0.110 1.637 sum -13.816 -20.537 -0.548 24.758 Atomic orbital electron populations 1.20731 0.88688 1.03540 1.03259 1.21149 0.97020 0.87861 0.93050 1.21715 0.92893 0.99954 1.07195 1.19790 0.93061 0.91115 0.93936 1.65795 1.05085 1.07235 1.35578 1.24601 0.98164 0.97480 0.93963 1.22762 0.94837 0.96057 0.83295 1.24017 0.95214 0.95324 0.95430 1.21598 1.01716 0.80851 0.96383 1.47707 1.65391 1.08063 1.11775 1.21979 1.02023 0.83530 0.93078 1.19343 0.89161 0.95751 0.98041 1.21038 0.96973 1.08768 1.29262 0.92585 1.25000 0.95952 0.97699 0.95627 1.69965 1.02250 1.39856 1.41115 0.86613 0.77128 0.83509 0.80484 1.20198 1.21266 1.20154 1.20600 0.78464 0.91567 0.82896 1.90773 1.52052 1.27118 1.71382 1.22823 0.99553 0.82190 0.98129 1.88080 1.74417 1.43929 1.20452 1.22015 1.01700 0.92160 1.07193 1.22593 0.89222 0.98119 0.93296 1.67581 1.10017 1.29156 1.14750 0.90229 0.90647 0.90341 0.84638 0.89064 0.87971 0.87058 0.88439 0.88587 0.89757 0.90589 0.91622 0.96646 0.95914 0.92884 0.89729 0.85188 0.84346 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.17 36.00 0.37 -0.30 16 2 C 0.15 1.34 6.78 -82.65 -0.56 0.78 16 3 C -0.20 -1.76 8.74 -39.25 -0.34 -2.10 16 4 C 0.13 1.18 5.34 -83.61 -0.45 0.74 16 5 N -0.42 -3.95 6.35 -180.41 -1.15 -5.10 16 6 C -0.02 -0.14 5.61 -7.26 -0.04 -0.18 16 7 C 0.07 0.78 1.29 -91.02 -0.12 0.66 16 8 C 0.03 0.24 5.98 -7.28 -0.04 0.19 16 9 C 0.12 1.58 5.85 -4.44 -0.03 1.56 16 10 N -0.60 -10.36 2.84 -174.73 -0.50 -10.85 16 11 C 0.11 2.38 5.20 -4.04 -0.02 2.36 16 12 C 0.01 0.39 5.29 -27.88 -0.15 0.24 16 13 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 14 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.48 8.43 7.57 -11.72 -0.09 8.34 16 22 O -0.54 -11.82 16.33 5.56 0.09 -11.73 16 23 C 0.05 0.66 6.70 35.74 0.24 0.89 16 24 O -0.35 -4.29 10.68 -35.23 -0.38 -4.66 16 25 C -0.21 -1.73 8.84 -39.25 -0.35 -2.08 16 26 C 0.12 1.06 11.17 -17.61 -0.20 0.86 16 27 N -0.50 -5.12 10.27 -9.57 -0.10 -5.22 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.14 1.05 7.67 -52.49 -0.40 0.65 16 32 H 0.09 0.77 7.66 -51.93 -0.40 0.37 16 33 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 34 H 0.11 0.85 8.11 -51.93 -0.42 0.43 16 35 H 0.10 0.76 7.28 -51.93 -0.38 0.39 16 36 H 0.10 1.18 7.83 -51.93 -0.41 0.77 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.69 7.29 -51.93 -0.38 1.31 16 39 H 0.07 1.24 7.97 -51.93 -0.41 0.82 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.08 0.84 7.99 -51.93 -0.41 0.43 16 44 H 0.13 1.51 8.14 -51.93 -0.42 1.08 16 45 H 0.14 0.90 7.22 -52.49 -0.38 0.52 16 46 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -35.12 377.86 -9.73 -44.85 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.93 Total: -1.77 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.18 Total: -1.57 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -1.00 Total: -47.58 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.29 Total: -16.39 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.12 -9.73 -44.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273583196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.821 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds