Wall clock time and date at job start Tue Mar 31 2020 16:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37916 * 119.58132 * 2 1 4 4 C 1.39451 * 119.06855 * 180.02562 * 3 2 1 5 5 N 1.39172 * 120.86898 * 180.02562 * 4 3 2 6 6 C 1.47595 * 110.99486 * 312.36873 * 5 4 3 7 7 C 1.52899 * 87.77933 * 221.75781 * 6 5 4 8 8 C 1.47586 * 111.00191 * 216.25876 * 5 4 3 9 9 C 1.52442 * 114.26618 * 271.57906 * 7 6 5 10 10 N 1.46298 * 109.56753 * 272.35229 * 9 7 6 11 11 C 1.46505 * 118.72563 * 164.04224 * 10 9 7 12 12 C 1.53001 * 109.46946 * 90.00255 * 11 10 9 13 13 C 1.50698 * 109.46796 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00411 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99805 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00029 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47107 * 60.00372 * 17 15 13 19 19 H 1.48493 * 109.46927 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47155 * 300.00317 * 17 15 13 21 21 C 1.33711 * 122.54653 * 344.02666 * 10 9 7 22 22 O 1.21277 * 118.36315 * 183.34526 * 21 10 9 23 23 C 1.50157 * 123.27756 * 3.36166 * 21 10 9 24 24 O 1.42564 * 114.25423 * 139.69293 * 7 6 5 25 25 C 1.39497 * 118.26880 * 359.73378 * 4 3 2 26 26 C 1.37876 * 119.06856 * 0.51079 * 25 4 3 27 27 N 1.31983 * 119.57830 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.46812 * 270.02131 * 1 2 3 29 29 H 1.09003 * 109.47329 * 30.01365 * 1 2 3 30 30 H 1.08995 * 109.47612 * 150.02246 * 1 2 3 31 31 H 1.08000 * 120.46701 * 0.03036 * 3 2 1 32 32 H 1.08994 * 113.50096 * 336.48369 * 6 5 4 33 33 H 1.08997 * 113.50397 * 107.03257 * 6 5 4 34 34 H 1.09004 * 113.49684 * 252.96873 * 8 5 4 35 35 H 1.09001 * 113.50211 * 23.50363 * 8 5 4 36 36 H 1.08998 * 109.45746 * 32.38515 * 9 7 6 37 37 H 1.08998 * 109.45688 * 152.34657 * 9 7 6 38 38 H 1.08997 * 109.47020 * 210.00233 * 11 10 9 39 39 H 1.08999 * 109.47093 * 330.00183 * 11 10 9 40 40 H 1.08997 * 109.47243 * 299.99841 * 12 11 10 41 41 H 1.08994 * 109.46860 * 59.99933 * 12 11 10 42 42 H 0.97003 * 119.99743 * 180.02562 * 16 15 13 43 43 H 1.09003 * 109.34775 * 102.48409 * 23 21 10 44 44 H 1.09000 * 109.34671 * 222.18128 * 23 21 10 45 45 H 1.08000 * 120.47067 * 180.27937 * 25 4 3 46 46 H 1.07997 * 119.58174 * 179.75140 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1994 0.0000 4 6 3.5822 1.1869 -0.0005 5 7 4.3070 2.3750 0.0000 6 6 3.7892 3.3107 -1.0173 7 6 5.2406 3.6471 -1.3608 8 6 5.5306 2.2486 -0.8155 9 6 5.8346 4.7794 -0.5308 10 7 5.5435 6.0618 -1.1720 11 6 5.7007 7.2913 -0.3910 12 6 7.1291 7.8164 -0.5486 13 6 7.2905 9.0815 0.2543 14 1 6.4577 9.4717 0.8206 15 6 8.5016 9.7403 0.2667 16 7 9.5158 9.2649 -0.4225 17 14 8.7020 11.3080 1.2624 18 1 8.4344 11.0222 2.6950 19 1 10.0882 11.8178 1.1094 20 1 7.7423 12.3306 0.7741 21 6 5.1399 6.1551 -2.4434 22 8 4.9791 7.2598 -2.9171 23 6 4.8755 4.9604 -3.3137 24 8 5.4928 3.7964 -2.7560 25 6 4.2319 -0.0475 0.0046 26 6 3.4775 -1.2016 -0.0007 27 7 2.1584 -1.1478 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8899 -0.5140 30 1 -0.3634 -0.8901 -0.5134 31 1 1.6486 2.1352 0.0005 32 1 3.2536 2.8179 -1.8286 33 1 3.2368 4.1501 -0.5948 34 1 6.4439 2.1939 -0.2230 35 1 5.4700 1.4660 -1.5717 36 1 5.3979 4.7654 0.4678 37 1 6.9141 4.6477 -0.4568 38 1 4.9960 8.0418 -0.7493 39 1 5.5046 7.0814 0.6604 40 1 7.8337 7.0660 -0.1904 41 1 7.3250 8.0263 -1.6000 42 1 10.3680 9.7282 -0.4135 43 1 3.8001 4.7986 -3.3880 44 1 5.2831 5.1409 -4.3083 45 1 5.3107 -0.0987 0.0089 46 1 3.9719 -2.1617 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273583196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:34 Heat of formation + Delta-G solvation = -16.728580 kcal Electronic energy + Delta-G solvation = -28357.009973 eV Core-core repulsion = 24440.286885 eV Total energy + Delta-G solvation = -3916.723088 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.03467 -41.40140 -40.24920 -38.10919 -37.03430 -35.15453 -33.94267 -33.43798 -32.04772 -30.17047 -28.88158 -28.72534 -27.33621 -26.68635 -26.33836 -23.89046 -23.57907 -22.36152 -21.27451 -19.47579 -19.18629 -18.75622 -18.16031 -17.74799 -17.37084 -16.95649 -16.64113 -16.46897 -16.40002 -16.12407 -15.74389 -15.39747 -14.99155 -14.94973 -14.76855 -14.54836 -14.34150 -14.29164 -14.22903 -13.80919 -13.42384 -13.33402 -13.21224 -13.05323 -12.83863 -12.81262 -12.62647 -12.42553 -12.09195 -11.90976 -11.82193 -11.56506 -11.49496 -11.27018 -10.59850 -10.54283 -10.46674 -9.91868 -9.75430 -9.64655 -8.23998 -6.36695 0.16386 0.20078 1.38100 1.42598 1.43657 1.50321 1.76257 2.24828 2.39840 2.58474 2.89099 3.02631 3.09515 3.14765 3.43001 3.49032 3.51311 3.65419 4.03923 4.08238 4.09952 4.20471 4.21893 4.27600 4.38283 4.41037 4.45377 4.49655 4.54821 4.60168 4.63608 4.65425 4.70334 4.78575 4.83665 4.89861 4.97346 5.12425 5.21314 5.36073 5.41642 5.54321 5.57564 5.66368 5.79069 5.94231 6.14313 6.38721 6.78315 7.02517 7.07855 7.32866 8.88082 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.002452 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.797458 B =11417.880341 C =11733.667729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.133 3.867 3 C -0.202 4.202 4 C 0.115 3.885 5 N -0.427 5.427 6 C -0.005 4.005 7 C 0.066 3.934 8 C 0.036 3.964 9 C 0.116 3.884 10 N -0.599 5.599 11 C 0.130 3.870 12 C 0.027 3.973 13 C -0.544 4.544 14 H 0.066 0.934 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.970 3.030 18 H -0.260 1.260 19 H -0.283 1.283 20 H -0.270 1.270 21 C 0.469 3.531 22 O -0.590 6.590 23 C 0.064 3.936 24 O -0.353 6.353 25 C -0.210 4.210 26 C 0.117 3.883 27 N -0.529 5.529 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.090 0.910 40 H -0.003 1.003 41 H -0.026 1.026 42 H 0.264 0.736 43 H 0.120 0.880 44 H 0.141 0.859 45 H 0.156 0.844 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.306 -23.129 -0.045 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.003 4.003 3 C -0.224 4.224 4 C 0.009 3.991 5 N -0.143 5.143 6 C -0.132 4.132 7 C 0.025 3.975 8 C -0.091 4.091 9 C -0.007 4.007 10 N -0.330 5.330 11 C 0.008 3.992 12 C -0.011 4.011 13 C -0.583 4.583 14 H 0.084 0.916 15 C -0.199 4.199 16 N -0.573 5.573 17 Si 0.794 3.206 18 H -0.184 1.184 19 H -0.208 1.208 20 H -0.195 1.195 21 C 0.258 3.742 22 O -0.471 6.471 23 C -0.015 4.015 24 O -0.271 6.271 25 C -0.232 4.232 26 C -0.040 4.040 27 N -0.241 5.241 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.163 0.837 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.016 0.984 41 H -0.007 1.007 42 H 0.073 0.927 43 H 0.138 0.862 44 H 0.159 0.841 45 H 0.174 0.826 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -15.528 -23.232 0.270 27.945 hybrid contribution 1.013 1.788 -0.174 2.063 sum -14.515 -21.444 0.096 25.895 Atomic orbital electron populations 1.20790 0.87198 1.04241 1.03838 1.21553 0.98223 0.87763 0.92812 1.21861 0.93011 1.00329 1.07216 1.19931 0.93334 0.91345 0.94488 1.65838 1.05316 1.07421 1.35710 1.24553 0.96843 0.97513 0.94298 1.22771 0.96415 0.96136 0.82172 1.24063 0.95527 0.93872 0.95611 1.21798 1.01545 0.79850 0.97491 1.47736 1.64923 1.08393 1.11939 1.21516 0.97850 0.84992 0.94883 1.19142 0.92246 0.95211 0.94546 1.21515 0.97516 1.09678 1.29547 0.91580 1.26029 0.95541 1.01547 0.96742 1.70113 1.02873 1.41650 1.42668 0.85428 0.77185 0.78638 0.79359 1.18402 1.20844 1.19488 1.21647 0.77037 0.92576 0.82939 1.90742 1.54373 1.29595 1.72416 1.22818 1.01708 0.79978 0.96985 1.88092 1.74761 1.43063 1.21166 1.22223 1.02612 0.91738 1.06587 1.23025 0.88943 0.99317 0.92675 1.67624 1.10964 1.29856 1.15610 0.89631 0.89131 0.90459 0.83730 0.87754 0.88083 0.86005 0.87105 0.87194 0.90798 0.92273 0.89196 0.98417 1.00740 0.92708 0.86245 0.84142 0.82636 0.80286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 10.17 71.23 0.72 -0.43 16 2 C 0.13 2.24 6.78 42.46 0.29 2.52 16 3 C -0.20 -3.24 8.74 22.49 0.20 -3.04 16 4 C 0.11 1.88 5.34 38.57 0.21 2.08 16 5 N -0.43 -6.94 6.35 -725.48 -4.61 -11.55 16 6 C -0.01 -0.08 5.61 83.70 0.47 0.39 16 7 C 0.07 1.30 1.29 -11.05 -0.01 1.28 16 8 C 0.04 0.53 5.98 83.69 0.50 1.03 16 9 C 0.12 3.00 5.85 86.23 0.50 3.50 16 10 N -0.60 -20.94 2.84 -825.70 -2.34 -23.29 16 11 C 0.13 5.52 5.20 86.38 0.45 5.97 16 12 C 0.03 1.45 5.29 29.85 0.16 1.61 16 13 C -0.54 -31.54 9.11 25.60 0.23 -31.30 16 14 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 15 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 16 N -0.93 -58.18 13.29 21.45 0.28 -57.90 16 17 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 18 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 C 0.47 16.68 7.57 87.65 0.66 17.34 16 22 O -0.59 -26.98 16.33 -3.02 -0.05 -27.03 16 23 C 0.06 1.51 6.70 71.07 0.48 1.98 16 24 O -0.35 -7.89 10.68 -148.98 -1.59 -9.49 16 25 C -0.21 -2.99 8.84 22.49 0.20 -2.79 16 26 C 0.12 1.76 11.17 84.58 0.94 2.70 16 27 N -0.53 -9.99 10.27 -184.20 -1.89 -11.88 16 28 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.09 0.70 8.08 -2.39 -0.02 0.68 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.14 1.94 7.67 -2.91 -0.02 1.91 16 32 H 0.10 1.43 7.66 -2.39 -0.02 1.41 16 33 H 0.10 1.66 8.11 -2.39 -0.02 1.64 16 34 H 0.12 1.54 8.11 -2.38 -0.02 1.52 16 35 H 0.11 1.38 7.28 -2.39 -0.02 1.36 16 36 H 0.11 2.54 7.83 -2.39 -0.02 2.52 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 2.72 7.29 -2.39 -0.02 2.70 16 39 H 0.09 3.36 7.97 -2.39 -0.02 3.34 16 40 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H -0.03 -1.65 8.14 -2.39 -0.02 -1.67 16 42 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.12 2.04 7.99 -2.39 -0.02 2.02 16 44 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.16 1.57 7.22 -2.91 -0.02 1.55 16 46 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -78.83 377.86 -0.73 -79.56 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.98 Total: 11.46 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.46 Total: 3.28 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -8.55 Total: -104.61 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -1.64 Total: -36.52 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -78.83 -0.73 -79.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273583196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.829 kcal (2) G-P(sol) polarization free energy of solvation -78.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds