Wall clock time and date at job start Tue Mar 31 2020 17:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.46070 * 2 1 4 4 C 1.36939 * 120.00561 * 59.99445 * 3 2 1 5 5 H 1.07999 * 119.99542 * 0.02562 * 4 3 2 6 6 C 1.38806 * 120.00458 * 180.02562 * 4 3 2 7 7 N 1.31627 * 119.99812 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00174 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47056 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.47045 * 299.99727 * 8 6 4 11 11 H 1.48501 * 109.47408 * 59.99714 * 8 6 4 12 12 C 1.53048 * 109.45671 * 119.96923 * 2 1 3 13 13 C 1.53162 * 109.32412 * 181.38942 * 12 2 1 14 14 N 1.46929 * 108.76617 * 305.35140 * 13 12 2 15 15 C 1.34780 * 120.62983 * 233.63325 * 14 13 12 16 16 O 1.21529 * 119.99755 * 174.36985 * 15 14 13 17 17 C 1.48033 * 120.00266 * 354.37573 * 15 14 13 18 18 C 1.39558 * 119.99721 * 324.37272 * 17 15 14 19 19 C 1.37823 * 119.99937 * 179.72038 * 18 17 15 20 20 C 1.39553 * 119.99490 * 0.55298 * 19 18 17 21 21 C 1.48041 * 119.99625 * 179.69904 * 20 19 18 22 22 N 1.34776 * 120.00106 * 0.02562 * 21 20 19 23 23 O 1.21528 * 119.99623 * 180.02562 * 21 20 19 24 24 C 1.39547 * 120.00425 * 359.71769 * 20 19 18 25 25 C 1.37820 * 119.99953 * 0.02562 * 24 20 19 26 26 C 1.46920 * 118.73738 * 53.61442 * 14 13 12 27 27 C 1.53035 * 109.46025 * 240.02118 * 2 1 3 28 28 H 1.09003 * 109.46813 * 60.00435 * 1 2 3 29 29 H 1.08993 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46982 * 300.00448 * 1 2 3 31 31 H 0.97002 * 119.99756 * 239.99747 * 3 2 1 32 32 H 0.96995 * 119.99962 * 0.02562 * 7 6 4 33 33 H 1.09003 * 109.49356 * 301.32040 * 12 2 1 34 34 H 1.08996 * 109.49790 * 61.41848 * 12 2 1 35 35 H 1.09005 * 109.58793 * 185.57183 * 13 12 2 36 36 H 1.08998 * 109.71468 * 65.21202 * 13 12 2 37 37 H 1.07999 * 120.00143 * 359.97438 * 18 17 15 38 38 H 1.08001 * 120.00335 * 180.27186 * 19 18 17 39 39 H 0.97005 * 119.99720 * 359.97438 * 22 21 20 40 40 H 0.96993 * 120.00268 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.00318 * 179.97438 * 24 20 19 42 42 H 1.08003 * 120.00205 * 180.02562 * 25 24 20 43 43 H 1.09002 * 109.58524 * 186.60084 * 26 14 13 44 44 H 1.09002 * 109.59061 * 66.18036 * 26 14 13 45 45 H 1.08995 * 109.50078 * 298.58253 * 27 2 1 46 46 H 1.09000 * 109.49668 * 58.68377 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6871 2.2245 1.0269 5 1 1.0665 1.8711 1.8371 6 6 2.1491 3.5334 1.0266 7 7 2.9059 3.9640 0.0395 8 14 1.6982 4.6834 2.4279 9 1 2.3125 6.0148 2.1927 10 1 0.2214 4.8243 2.4968 11 1 2.2025 4.1253 3.7082 12 6 2.0398 -0.7209 1.2501 13 6 3.5711 -0.6888 1.2647 14 7 4.0676 -1.2493 0.0006 15 6 4.9610 -2.2585 0.0008 16 8 5.2867 -2.7819 -1.0465 17 6 5.5454 -2.7294 1.2768 18 6 5.8174 -1.8181 2.2981 19 6 6.3561 -2.2573 3.4882 20 6 6.6402 -3.6117 3.6676 21 6 7.2251 -4.0826 4.9435 22 7 7.4826 -3.2032 5.9319 23 8 7.4729 -5.2620 5.0996 24 6 6.3735 -4.5223 2.6444 25 6 5.8299 -4.0838 1.4562 26 6 3.5714 -0.6891 -1.2638 27 6 2.0399 -0.7210 -1.2499 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.5758 1.6986 -0.7275 32 1 3.1403 3.3667 -0.6879 33 1 1.6574 -0.2206 2.1399 34 1 1.6975 -1.7556 1.2384 35 1 3.9411 -1.2848 2.0990 36 1 3.9163 0.3398 1.3690 37 1 5.6020 -0.7692 2.1573 38 1 6.5626 -1.5526 4.2802 39 1 7.2851 -2.2617 5.8071 40 1 7.8654 -3.5117 6.7680 41 1 6.5937 -5.5704 2.7831 42 1 5.6230 -4.7885 0.6644 43 1 3.9418 -1.2852 -2.0978 44 1 3.9146 0.3403 -1.3670 45 1 1.6976 -1.7558 -1.2381 46 1 1.6575 -0.2209 -2.1397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274398163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:16 Heat of formation + Delta-G solvation = -24.069547 kcal Electronic energy + Delta-G solvation = -28878.590799 eV Core-core repulsion = 24961.549383 eV Total energy + Delta-G solvation = -3917.041416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.83507 -39.93106 -38.41585 -37.59117 -34.80721 -34.21705 -32.81430 -31.85360 -31.20772 -30.45253 -28.83101 -27.87236 -25.31111 -23.83749 -23.47610 -22.80682 -22.49049 -21.08794 -20.08557 -18.80103 -18.30467 -17.40369 -17.10584 -16.98850 -16.16816 -15.54163 -15.32320 -15.08592 -14.89912 -14.62199 -14.47369 -14.30456 -13.87204 -13.70094 -13.62139 -13.56533 -13.15462 -12.74708 -12.62663 -12.60889 -12.10750 -11.67060 -11.47269 -11.43080 -11.29812 -10.90248 -10.84188 -10.61121 -10.45763 -10.36460 -10.09041 -10.04385 -9.95314 -9.79665 -9.31910 -9.17175 -9.13652 -8.98584 -8.38515 -7.10756 -6.15516 -3.16690 0.26858 1.04627 2.29535 2.91217 3.09025 3.12811 3.44320 3.47517 3.61005 3.65194 4.31125 4.45742 4.54543 4.59141 4.64595 4.97799 5.08711 5.12423 5.19000 5.23905 5.38992 5.43276 5.49716 5.61971 5.63407 5.67844 5.85139 5.89925 5.90972 5.96037 6.00960 6.05419 6.12817 6.26646 6.29618 6.36700 6.38016 6.44439 6.48042 6.60676 6.69736 6.87724 6.93562 6.94497 7.54776 7.74782 7.86868 8.18900 8.68671 9.14872 10.01602 10.17461 11.32022 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.003526 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.064298 B = 7938.862509 C = 9409.794336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.203 3.797 3 N -0.728 5.728 4 C -0.323 4.323 5 H 0.065 0.935 6 C -0.043 4.043 7 N -0.944 5.944 8 Si 1.074 2.926 9 H -0.286 1.286 10 H -0.296 1.296 11 H -0.296 1.296 12 C -0.134 4.134 13 C 0.102 3.898 14 N -0.590 5.590 15 C 0.552 3.448 16 O -0.545 6.545 17 C -0.095 4.095 18 C -0.096 4.096 19 C -0.093 4.093 20 C -0.124 4.124 21 C 0.565 3.435 22 N -0.850 5.850 23 O -0.540 6.540 24 C -0.067 4.067 25 C -0.075 4.075 26 C 0.117 3.883 27 C -0.131 4.131 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.366 0.634 32 H 0.254 0.746 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.403 0.597 40 H 0.405 0.595 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.930 -12.604 7.454 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.111 3.889 3 N -0.372 5.372 4 C -0.454 4.454 5 H 0.083 0.917 6 C -0.241 4.241 7 N -0.589 5.589 8 Si 0.906 3.094 9 H -0.212 1.212 10 H -0.224 1.224 11 H -0.224 1.224 12 C -0.174 4.174 13 C -0.020 4.020 14 N -0.322 5.322 15 C 0.340 3.660 16 O -0.424 6.424 17 C -0.098 4.098 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.128 4.128 21 C 0.351 3.649 22 N -0.414 5.414 23 O -0.417 6.417 24 C -0.086 4.086 25 C -0.093 4.093 26 C -0.005 4.005 27 C -0.170 4.170 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.201 0.799 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.164 0.836 38 H 0.151 0.849 39 H 0.233 0.767 40 H 0.237 0.763 41 H 0.160 0.840 42 H 0.157 0.843 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.232 -12.130 7.597 15.239 hybrid contribution -0.188 -0.885 -0.361 0.974 sum 5.045 -13.015 7.235 15.722 Atomic orbital electron populations 1.22195 0.97440 0.99040 1.02164 1.19465 0.92213 0.85695 0.91484 1.42522 1.61197 1.06684 1.26792 1.19906 1.29676 0.94418 1.01446 0.91741 1.25641 0.99089 0.95899 1.03477 1.70896 1.38856 1.37956 1.11211 0.83305 0.75419 0.76424 0.74258 1.21175 1.22401 1.22385 1.22290 0.94478 0.99222 1.01407 1.22236 0.95574 0.99957 0.84237 1.48021 1.41638 1.33899 1.08609 1.18346 0.79538 0.79679 0.88454 1.90752 1.61902 1.56913 1.32797 1.20200 1.00417 0.94708 0.94463 1.21607 0.96868 1.00775 0.92152 1.21230 0.97813 0.94329 0.97801 1.20013 1.03398 0.94395 0.94950 1.18330 0.77232 0.85563 0.83808 1.43765 1.67446 1.11870 1.18315 1.90814 1.52667 1.16700 1.81560 1.21213 0.95576 1.00296 0.91476 1.21208 0.96395 0.94506 0.97229 1.21597 0.94298 0.99104 0.85531 1.22112 0.94779 1.00678 0.99390 0.93251 0.94518 0.92435 0.79935 0.93429 0.90470 0.93226 0.90048 0.89133 0.83583 0.84893 0.76696 0.76340 0.84026 0.84266 0.89571 0.90730 0.91674 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.44 37.16 0.31 -2.24 16 2 C 0.20 3.55 0.74 -131.78 -0.10 3.45 16 3 N -0.73 -15.73 4.14 -47.19 -0.20 -15.92 16 4 C -0.32 -7.96 8.68 -15.06 -0.13 -8.09 16 5 H 0.06 1.57 6.70 -52.49 -0.35 1.22 16 6 C -0.04 -1.15 5.50 -17.43 -0.10 -1.24 16 7 N -0.94 -27.12 13.70 55.49 0.76 -26.36 16 8 Si 1.07 24.12 29.92 -169.99 -5.09 19.04 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.30 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.30 -6.28 7.11 56.52 0.40 -5.88 16 12 C -0.13 -2.14 4.70 -26.62 -0.13 -2.26 16 13 C 0.10 1.53 4.52 -3.72 -0.02 1.51 16 14 N -0.59 -9.13 2.97 -173.83 -0.52 -9.65 16 15 C 0.55 8.68 7.38 -12.24 -0.09 8.59 16 16 O -0.54 -10.04 16.24 5.34 0.09 -9.95 16 17 C -0.09 -1.23 5.29 -104.90 -0.56 -1.78 16 18 C -0.10 -1.06 7.34 -39.24 -0.29 -1.35 16 19 C -0.09 -0.84 9.53 -39.24 -0.37 -1.21 16 20 C -0.12 -1.28 5.88 -104.90 -0.62 -1.89 16 21 C 0.56 5.88 8.05 -12.24 -0.10 5.78 16 22 N -0.85 -5.33 8.82 30.57 0.27 -5.06 16 23 O -0.54 -7.60 17.17 5.34 0.09 -7.51 16 24 C -0.07 -0.73 9.58 -39.25 -0.38 -1.10 16 25 C -0.07 -0.88 9.59 -39.25 -0.38 -1.25 16 26 C 0.12 1.86 6.17 -3.71 -0.02 1.84 16 27 C -0.13 -2.03 4.96 -26.61 -0.13 -2.17 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.06 7.27 -51.93 -0.38 0.68 16 31 H 0.37 8.40 5.29 -40.82 -0.22 8.18 16 32 H 0.25 7.20 6.77 -40.82 -0.28 6.92 16 33 H 0.08 1.31 7.31 -51.93 -0.38 0.93 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.04 4.46 -51.93 -0.23 0.81 16 36 H 0.09 1.59 7.65 -51.93 -0.40 1.19 16 37 H 0.15 1.61 6.05 -52.49 -0.32 1.30 16 38 H 0.13 0.76 6.39 -52.49 -0.34 0.42 16 39 H 0.40 1.53 6.85 -40.82 -0.28 1.26 16 40 H 0.41 2.00 8.93 -40.82 -0.36 1.63 16 41 H 0.14 1.45 7.64 -52.49 -0.40 1.05 16 42 H 0.14 1.56 8.00 -52.48 -0.42 1.14 16 43 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 44 H 0.07 1.28 6.94 -51.93 -0.36 0.92 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -32.63 364.59 -8.16 -40.79 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -5.98 Total: 12.55 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -3.08 Total: -3.42 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.32 Total: -56.99 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.18 Total: -17.46 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -5.09 Total: 19.04 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.63 -8.16 -40.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274398163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.719 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds