Wall clock time and date at job start Tue Mar 31 2020 17:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.46070 * 2 1 4 4 C 1.36939 * 120.00561 * 59.99445 * 3 2 1 5 5 H 1.07999 * 119.99542 * 0.02562 * 4 3 2 6 6 C 1.38806 * 120.00458 * 180.02562 * 4 3 2 7 7 N 1.31627 * 119.99812 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00174 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47056 * 179.97438 * 8 6 4 10 10 H 1.48502 * 109.47045 * 299.99727 * 8 6 4 11 11 H 1.48501 * 109.47408 * 59.99714 * 8 6 4 12 12 C 1.53048 * 109.45671 * 119.96923 * 2 1 3 13 13 C 1.53162 * 109.32412 * 181.38942 * 12 2 1 14 14 N 1.46929 * 108.76617 * 305.35140 * 13 12 2 15 15 C 1.34780 * 120.62983 * 233.63325 * 14 13 12 16 16 O 1.21529 * 119.99755 * 174.36985 * 15 14 13 17 17 C 1.48033 * 120.00266 * 354.37573 * 15 14 13 18 18 C 1.39558 * 119.99721 * 324.37272 * 17 15 14 19 19 C 1.37823 * 119.99937 * 179.72038 * 18 17 15 20 20 C 1.39553 * 119.99490 * 0.55298 * 19 18 17 21 21 C 1.48041 * 119.99625 * 179.69904 * 20 19 18 22 22 N 1.34776 * 120.00106 * 0.02562 * 21 20 19 23 23 O 1.21528 * 119.99623 * 180.02562 * 21 20 19 24 24 C 1.39547 * 120.00425 * 359.71769 * 20 19 18 25 25 C 1.37820 * 119.99953 * 0.02562 * 24 20 19 26 26 C 1.46920 * 118.73738 * 53.61442 * 14 13 12 27 27 C 1.53035 * 109.46025 * 240.02118 * 2 1 3 28 28 H 1.09003 * 109.46813 * 60.00435 * 1 2 3 29 29 H 1.08993 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46982 * 300.00448 * 1 2 3 31 31 H 0.97002 * 119.99756 * 239.99747 * 3 2 1 32 32 H 0.96995 * 119.99962 * 0.02562 * 7 6 4 33 33 H 1.09003 * 109.49356 * 301.32040 * 12 2 1 34 34 H 1.08996 * 109.49790 * 61.41848 * 12 2 1 35 35 H 1.09005 * 109.58793 * 185.57183 * 13 12 2 36 36 H 1.08998 * 109.71468 * 65.21202 * 13 12 2 37 37 H 1.07999 * 120.00143 * 359.97438 * 18 17 15 38 38 H 1.08001 * 120.00335 * 180.27186 * 19 18 17 39 39 H 0.97005 * 119.99720 * 359.97438 * 22 21 20 40 40 H 0.96993 * 120.00268 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.00318 * 179.97438 * 24 20 19 42 42 H 1.08003 * 120.00205 * 180.02562 * 25 24 20 43 43 H 1.09002 * 109.58524 * 186.60084 * 26 14 13 44 44 H 1.09002 * 109.59061 * 66.18036 * 26 14 13 45 45 H 1.08995 * 109.50078 * 298.58253 * 27 2 1 46 46 H 1.09000 * 109.49668 * 58.68377 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6871 2.2245 1.0269 5 1 1.0665 1.8711 1.8371 6 6 2.1491 3.5334 1.0266 7 7 2.9059 3.9640 0.0395 8 14 1.6982 4.6834 2.4279 9 1 2.3125 6.0148 2.1927 10 1 0.2214 4.8243 2.4968 11 1 2.2025 4.1253 3.7082 12 6 2.0398 -0.7209 1.2501 13 6 3.5711 -0.6888 1.2647 14 7 4.0676 -1.2493 0.0006 15 6 4.9610 -2.2585 0.0008 16 8 5.2867 -2.7819 -1.0465 17 6 5.5454 -2.7294 1.2768 18 6 5.8174 -1.8181 2.2981 19 6 6.3561 -2.2573 3.4882 20 6 6.6402 -3.6117 3.6676 21 6 7.2251 -4.0826 4.9435 22 7 7.4826 -3.2032 5.9319 23 8 7.4729 -5.2620 5.0996 24 6 6.3735 -4.5223 2.6444 25 6 5.8299 -4.0838 1.4562 26 6 3.5714 -0.6891 -1.2638 27 6 2.0399 -0.7210 -1.2499 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.5758 1.6986 -0.7275 32 1 3.1403 3.3667 -0.6879 33 1 1.6574 -0.2206 2.1399 34 1 1.6975 -1.7556 1.2384 35 1 3.9411 -1.2848 2.0990 36 1 3.9163 0.3398 1.3690 37 1 5.6020 -0.7692 2.1573 38 1 6.5626 -1.5526 4.2802 39 1 7.2851 -2.2617 5.8071 40 1 7.8654 -3.5117 6.7680 41 1 6.5937 -5.5704 2.7831 42 1 5.6230 -4.7885 0.6644 43 1 3.9418 -1.2852 -2.0978 44 1 3.9146 0.3403 -1.3670 45 1 1.6976 -1.7558 -1.2381 46 1 1.6575 -0.2209 -2.1397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274398163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:15 Heat of formation + Delta-G solvation = -46.669546 kcal Electronic energy + Delta-G solvation = -28879.570809 eV Core-core repulsion = 24961.549383 eV Total energy + Delta-G solvation = -3918.021426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.91677 -40.91087 -39.59816 -38.73255 -36.29869 -34.96085 -34.47293 -32.99770 -32.05008 -31.59885 -30.54468 -29.23042 -26.36737 -25.60662 -24.65397 -24.03743 -23.50931 -22.02996 -21.23516 -20.11260 -19.20811 -18.86920 -18.46387 -17.85549 -17.35988 -16.89848 -16.34151 -16.24384 -15.89157 -15.81175 -15.63403 -15.47457 -15.35398 -15.06029 -14.86512 -14.52652 -14.40920 -14.14677 -13.80929 -13.59931 -13.30351 -13.24245 -12.81937 -12.71810 -12.57758 -12.32504 -12.22087 -12.12409 -11.87140 -11.73482 -11.46779 -11.36272 -11.03811 -10.93638 -10.80492 -10.76427 -10.18210 -10.04056 -9.71081 -8.96337 -8.21212 -5.15682 -0.63411 0.21047 1.31856 1.64398 1.72475 1.80696 1.88041 1.97734 2.43608 2.72111 2.79536 3.27567 3.54274 3.65272 3.68799 3.75986 3.82893 3.88433 3.95214 4.08468 4.16085 4.21025 4.26728 4.34975 4.51323 4.57228 4.60445 4.71076 4.78262 4.85744 4.93012 4.96067 4.99193 5.03103 5.09152 5.13704 5.15937 5.26204 5.29795 5.49386 5.57516 5.62356 5.79311 5.83328 6.31397 6.34732 6.64797 6.95211 7.21781 7.23438 8.14504 8.27641 9.30190 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.003526 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.064298 B = 7938.862509 C = 9409.794336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.194 3.806 3 N -0.735 5.735 4 C -0.299 4.299 5 H 0.069 0.931 6 C -0.105 4.105 7 N -0.984 5.984 8 Si 1.116 2.884 9 H -0.304 1.304 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.129 4.129 13 C 0.110 3.890 14 N -0.590 5.590 15 C 0.551 3.449 16 O -0.577 6.577 17 C -0.111 4.111 18 C -0.099 4.099 19 C -0.076 4.076 20 C -0.123 4.123 21 C 0.564 3.436 22 N -0.826 5.826 23 O -0.582 6.582 24 C -0.069 4.069 25 C -0.077 4.077 26 C 0.119 3.881 27 C -0.122 4.122 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.357 0.643 32 H 0.243 0.757 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.147 0.853 38 H 0.172 0.828 39 H 0.418 0.582 40 H 0.415 0.585 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.082 0.918 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 -13.531 9.803 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.104 3.896 3 N -0.378 5.378 4 C -0.431 4.431 5 H 0.087 0.913 6 C -0.296 4.296 7 N -0.633 5.633 8 Si 0.944 3.056 9 H -0.231 1.231 10 H -0.213 1.213 11 H -0.200 1.200 12 C -0.169 4.169 13 C -0.011 4.011 14 N -0.320 5.320 15 C 0.341 3.659 16 O -0.459 6.459 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.094 4.094 20 C -0.127 4.127 21 C 0.349 3.651 22 N -0.391 5.391 23 O -0.463 6.463 24 C -0.088 4.088 25 C -0.096 4.096 26 C -0.003 4.003 27 C -0.160 4.160 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.190 0.810 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.164 0.836 38 H 0.190 0.810 39 H 0.251 0.749 40 H 0.248 0.752 41 H 0.163 0.837 42 H 0.156 0.844 43 H 0.104 0.896 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.953 -13.069 9.993 17.181 hybrid contribution -0.106 -0.681 -1.071 1.274 sum 4.847 -13.750 8.922 17.093 Atomic orbital electron populations 1.22124 0.96733 1.00579 1.00850 1.19761 0.92609 0.83931 0.93308 1.42681 1.61078 1.08170 1.25832 1.20149 1.27215 0.94314 1.01383 0.91293 1.26755 0.99799 0.98082 1.04931 1.70996 1.41766 1.38204 1.12360 0.82741 0.75566 0.74179 0.73158 1.23051 1.21341 1.20009 1.22225 0.94916 0.99966 0.99840 1.22157 0.95032 0.98977 0.84946 1.48032 1.41666 1.33862 1.08465 1.18777 0.78910 0.79086 0.89124 1.90728 1.62884 1.57982 1.34292 1.20064 1.02021 0.95546 0.93814 1.21642 0.97293 1.00409 0.92406 1.21538 0.95713 0.94346 0.97785 1.20144 1.02886 0.94827 0.94818 1.18351 0.77053 0.85333 0.84318 1.43604 1.65671 1.12170 1.17668 1.90805 1.54724 1.18520 1.82296 1.21290 0.95345 1.00798 0.91366 1.21196 0.96627 0.94103 0.97634 1.21484 0.94700 0.98059 0.86101 1.22031 0.94209 1.01285 0.98488 0.94318 0.91568 0.93946 0.80989 0.94696 0.91255 0.91141 0.87313 0.91821 0.83556 0.81022 0.74929 0.75215 0.83721 0.84351 0.89612 0.92601 0.89964 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 8.44 71.98 0.61 -4.07 16 2 C 0.19 6.55 0.74 3.63 0.00 6.55 16 3 N -0.74 -31.79 4.14 -303.22 -1.25 -33.05 16 4 C -0.30 -14.59 8.68 84.03 0.73 -13.86 16 5 H 0.07 3.28 6.70 -2.91 -0.02 3.26 16 6 C -0.10 -5.55 5.50 84.86 0.47 -5.08 16 7 N -0.98 -57.84 13.70 21.65 0.30 -57.55 16 8 Si 1.12 48.43 29.92 68.60 2.05 50.48 16 9 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 10 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 12 C -0.13 -3.88 4.70 30.66 0.14 -3.73 16 13 C 0.11 3.17 4.52 86.35 0.39 3.56 16 14 N -0.59 -17.87 2.97 -822.15 -2.44 -20.31 16 15 C 0.55 17.06 7.38 86.84 0.64 17.70 16 16 O -0.58 -21.38 16.24 -3.81 -0.06 -21.44 16 17 C -0.11 -2.75 5.29 -20.04 -0.11 -2.85 16 18 C -0.10 -1.97 7.34 22.49 0.17 -1.80 16 19 C -0.08 -1.10 9.53 22.49 0.21 -0.89 16 20 C -0.12 -2.22 5.88 -20.04 -0.12 -2.33 16 21 C 0.56 10.32 8.05 86.84 0.70 11.02 16 22 N -0.83 -7.52 8.82 -175.47 -1.55 -9.07 16 23 O -0.58 -15.58 17.17 -3.81 -0.07 -15.64 16 24 C -0.07 -1.40 9.58 22.49 0.22 -1.19 16 25 C -0.08 -1.73 9.59 22.49 0.22 -1.51 16 26 C 0.12 3.80 6.17 86.36 0.53 4.33 16 27 C -0.12 -3.65 4.96 30.67 0.15 -3.50 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.49 7.27 -2.39 -0.02 1.47 16 31 H 0.36 16.81 5.29 -92.71 -0.49 16.32 16 32 H 0.24 14.24 6.77 -92.71 -0.63 13.61 16 33 H 0.07 2.21 7.31 -2.39 -0.02 2.19 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.11 2.53 4.46 -2.38 -0.01 2.52 16 36 H 0.06 2.21 7.65 -2.39 -0.02 2.19 16 37 H 0.15 2.94 6.05 -2.91 -0.02 2.92 16 38 H 0.17 1.10 6.39 -2.91 -0.02 1.08 16 39 H 0.42 1.34 6.85 -92.70 -0.64 0.71 16 40 H 0.42 2.76 8.93 -92.71 -0.83 1.94 16 41 H 0.15 2.83 7.64 -2.91 -0.02 2.81 16 42 H 0.14 3.06 8.00 -2.91 -0.02 3.04 16 43 H 0.09 2.75 7.00 -2.39 -0.02 2.73 16 44 H 0.06 1.99 6.94 -2.39 -0.02 1.97 16 45 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 46 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -71.80 364.59 1.17 -70.63 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: -0.76 Total: 33.60 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 4.95 Total: 2.34 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -4.95 Total: -119.98 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.13 Total: -37.08 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.05 Total: 50.48 kcal Total: -71.80 1.17 -70.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274398163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.963 kcal (2) G-P(sol) polarization free energy of solvation -71.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds