Wall clock time and date at job start Tue Mar 31 2020 17:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38344 * 120.44960 * 2 1 4 4 C 1.38835 * 118.50821 * 180.02562 * 3 2 1 5 5 C 1.38068 * 119.32537 * 359.97438 * 4 3 2 6 6 N 1.31944 * 120.85569 * 0.02562 * 5 4 3 7 7 C 1.32420 * 121.62320 * 359.97438 * 6 5 4 8 8 N 1.39006 * 119.70809 * 179.97438 * 7 6 5 9 9 C 1.47596 * 110.99827 * 96.10653 * 8 7 6 10 10 C 1.52892 * 87.78271 * 221.76376 * 9 8 7 11 11 C 1.47595 * 110.99816 * 0.02562 * 8 7 6 12 12 C 1.52457 * 114.26640 * 271.57880 * 10 9 8 13 13 N 1.46288 * 109.57070 * 272.35620 * 12 10 9 14 14 C 1.46498 * 118.73043 * 164.04187 * 13 12 10 15 15 C 1.53002 * 109.46929 * 89.99640 * 14 13 12 16 16 C 1.50696 * 109.46860 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00379 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00025 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00237 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46966 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47253 * 120.00063 * 20 18 16 23 23 H 1.48504 * 109.46947 * 240.00162 * 20 18 16 24 24 C 1.33719 * 122.54465 * 344.01991 * 13 12 10 25 25 O 1.21282 * 118.36154 * 183.34672 * 24 13 12 26 26 C 1.50164 * 123.27489 * 3.37045 * 24 13 12 27 27 O 1.42569 * 114.25551 * 139.69832 * 10 9 8 28 28 H 1.08994 * 109.47518 * 89.99748 * 1 2 3 29 29 H 1.09006 * 109.46871 * 209.99801 * 1 2 3 30 30 H 1.09002 * 109.47376 * 329.99622 * 1 2 3 31 31 H 1.08004 * 120.74536 * 0.02709 * 3 2 1 32 32 H 1.07993 * 120.34129 * 179.97438 * 4 3 2 33 33 H 1.08002 * 119.57504 * 180.02562 * 5 4 3 34 34 H 1.08991 * 113.50311 * 336.49368 * 9 8 7 35 35 H 1.09003 * 113.49824 * 107.03740 * 9 8 7 36 36 H 1.09004 * 113.49497 * 252.97251 * 11 8 7 37 37 H 1.09002 * 113.50095 * 23.50255 * 11 8 7 38 38 H 1.09004 * 109.45092 * 32.38953 * 12 10 9 39 39 H 1.09000 * 109.45121 * 152.34391 * 12 10 9 40 40 H 1.08993 * 109.47002 * 209.99896 * 14 13 12 41 41 H 1.09002 * 109.46837 * 330.00310 * 14 13 12 42 42 H 1.08999 * 109.47721 * 300.00360 * 15 14 13 43 43 H 1.09002 * 109.46814 * 60.00656 * 15 14 13 44 44 H 0.97000 * 120.00036 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.34742 * 102.48373 * 26 24 13 46 46 H 1.09007 * 109.34227 * 222.17199 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1926 0.0000 4 6 3.5957 1.1456 -0.0005 5 6 4.2307 -0.0804 -0.0005 6 7 3.5362 -1.2022 -0.0005 7 6 2.2120 -1.1991 0.0000 8 7 1.5202 -2.4048 -0.0005 9 6 1.1304 -2.7915 1.3695 10 6 1.5318 -4.2237 1.0157 11 6 2.4522 -3.5492 -0.0010 12 6 0.4127 -5.0531 0.3958 13 7 -0.3673 -5.6931 1.4551 14 6 -1.6851 -6.2417 1.1257 15 6 -1.5360 -7.7014 0.6919 16 6 -2.8916 -8.2655 0.3526 17 1 -3.7714 -7.6449 0.4373 18 6 -3.0086 -9.5739 -0.0662 19 7 -1.9373 -10.3298 -0.1689 20 14 -4.6888 -10.2730 -0.4876 21 1 -5.7240 -9.2267 -0.2900 22 1 -4.6986 -10.7184 -1.9041 23 1 -4.9797 -11.4297 0.3971 24 6 0.0763 -5.7972 2.7122 25 8 -0.6057 -6.3970 3.5160 26 6 1.3765 -5.2083 3.1786 27 8 2.2162 -4.9147 2.0581 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6877 2.1390 0.0004 32 1 4.1724 2.0586 -0.0010 33 1 5.3099 -0.1217 -0.0005 34 1 1.7551 -2.3433 2.1420 35 1 0.0648 -2.6750 1.5674 36 1 2.4996 -4.0706 -0.9571 37 1 3.4375 -3.3076 0.3977 38 1 -0.2369 -4.4045 -0.1921 39 1 0.8431 -5.8180 -0.2505 40 1 -2.3307 -6.1872 2.0022 41 1 -2.1262 -5.6645 0.3131 42 1 -0.8904 -7.7559 -0.1846 43 1 -1.0950 -8.2786 1.5046 44 1 -2.0197 -11.2504 -0.4632 45 1 1.1791 -4.2906 3.7326 46 1 1.8830 -5.9211 3.8294 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274691222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:42 Heat of formation + Delta-G solvation = 18.171071 kcal Electronic energy + Delta-G solvation = -28713.292929 eV Core-core repulsion = 24798.083203 eV Total energy + Delta-G solvation = -3915.209726 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.10369 -40.37679 -38.99840 -36.82831 -35.40260 -34.02065 -33.07079 -32.34894 -30.18361 -29.32784 -27.84753 -27.03523 -26.31807 -25.71946 -24.51587 -22.91924 -22.20725 -21.49016 -20.08642 -18.53446 -18.00548 -17.22050 -17.05394 -16.61102 -16.09532 -15.91878 -15.72362 -15.23971 -14.91183 -14.83790 -14.44832 -14.30511 -14.04234 -13.64050 -13.56176 -13.42440 -13.07470 -12.95522 -12.81558 -12.74299 -12.45560 -12.24535 -12.05012 -11.93003 -11.53007 -11.29157 -11.00312 -10.88825 -10.64323 -10.39527 -10.27603 -10.00578 -9.87906 -9.83461 -9.69989 -9.31191 -8.98677 -8.72668 -8.33686 -8.10518 -5.98508 -4.01587 0.69385 0.89228 2.87579 3.00125 3.29075 3.33061 3.36896 3.40876 3.44880 3.61368 3.90279 4.18302 4.29416 4.43085 4.48387 4.54421 4.58734 4.64640 4.77023 4.98617 5.00805 5.13618 5.15267 5.21954 5.29689 5.34984 5.37704 5.41530 5.47024 5.54622 5.61825 5.63408 5.75474 5.84232 5.84809 5.90042 6.09203 6.18177 6.51010 6.67478 6.76791 6.83910 6.90027 7.57680 7.61472 7.73192 7.93952 8.01945 8.36808 8.51462 9.05192 9.62085 11.13045 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019573 B = 0.002661 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.178042 B =10518.370127 C =11054.567142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.068 4.068 4 C -0.184 4.184 5 C 0.110 3.890 6 N -0.506 5.506 7 C 0.271 3.729 8 N -0.416 5.416 9 C -0.008 4.008 10 C 0.069 3.931 11 C 0.034 3.966 12 C 0.118 3.882 13 N -0.596 5.596 14 C 0.115 3.885 15 C 0.014 3.986 16 C -0.519 4.519 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.479 3.521 25 O -0.538 6.538 26 C 0.052 3.948 27 O -0.350 6.350 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.157 0.843 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.016 0.984 43 H 0.023 0.977 44 H 0.260 0.740 45 H 0.083 0.917 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.325 25.726 0.584 28.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.127 4.127 3 C -0.094 4.094 4 C -0.204 4.204 5 C -0.047 4.047 6 N -0.218 5.218 7 C 0.041 3.959 8 N -0.137 5.137 9 C -0.135 4.135 10 C 0.028 3.972 11 C -0.094 4.094 12 C -0.005 4.005 13 N -0.329 5.329 14 C -0.006 4.006 15 C -0.024 4.024 16 C -0.558 4.558 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.265 3.735 25 O -0.416 6.416 26 C -0.028 4.028 27 O -0.268 6.268 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.174 0.826 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.133 0.867 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.034 0.966 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.148 24.465 0.426 27.318 hybrid contribution -0.772 0.468 0.135 0.913 sum 11.377 24.932 0.561 27.411 Atomic orbital electron populations 1.20684 0.89557 1.02974 1.03076 1.20467 0.97868 0.92072 1.02254 1.21445 0.94104 0.97910 0.95938 1.22078 0.95215 0.99601 1.03510 1.22551 1.00094 0.87214 0.94862 1.67575 1.07452 1.32068 1.14697 1.20222 0.88232 0.91935 0.95526 1.66604 1.25843 0.99338 1.21881 1.24460 1.03659 0.95361 0.90059 1.22843 0.94296 0.89892 0.90167 1.23809 0.97219 0.88741 0.99659 1.21610 0.91948 0.96432 0.90518 1.47711 1.20188 1.57005 1.08007 1.21959 0.80706 0.97709 1.00208 1.19357 0.97449 0.88927 0.96675 1.21118 0.93032 0.96790 1.44856 0.92493 1.25006 0.96662 0.97076 0.95615 1.69987 1.28206 1.07695 1.47296 0.86504 0.84291 0.79099 0.77907 1.19689 1.21024 1.20991 1.20619 0.88571 0.81371 0.82914 1.90765 1.57058 1.41539 1.52208 1.22794 0.89306 1.01374 0.89277 1.88098 1.34914 1.76717 1.27032 0.90514 0.90700 0.91662 0.84602 0.84723 0.82592 0.89685 0.88142 0.87817 0.86698 0.88628 0.89827 0.90660 0.91643 0.96607 0.95908 0.93023 0.89917 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.78 36.01 0.35 -0.45 16 2 C -0.12 -1.11 5.90 -104.26 -0.62 -1.72 16 3 C -0.07 -0.49 9.85 -39.32 -0.39 -0.87 16 4 C -0.18 -1.22 10.10 -39.42 -0.40 -1.62 16 5 C 0.11 0.89 11.17 -17.57 -0.20 0.70 16 6 N -0.51 -5.39 8.20 -12.44 -0.10 -5.49 16 7 C 0.27 2.89 5.84 -155.01 -0.91 1.99 16 8 N -0.42 -4.50 5.52 -182.87 -1.01 -5.51 16 9 C -0.01 -0.09 5.63 -7.32 -0.04 -0.13 16 10 C 0.07 0.85 1.29 -91.04 -0.12 0.73 16 11 C 0.03 0.38 6.82 -7.35 -0.05 0.33 16 12 C 0.12 1.70 5.85 -4.43 -0.03 1.67 16 13 N -0.60 -10.76 2.84 -174.72 -0.50 -11.26 16 14 C 0.11 2.44 5.20 -4.04 -0.02 2.42 16 15 C 0.01 0.37 5.29 -27.88 -0.15 0.22 16 16 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.46 13.29 55.43 0.74 -26.73 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.48 8.80 7.57 -11.72 -0.09 8.71 16 25 O -0.54 -12.19 16.33 5.56 0.09 -12.10 16 26 C 0.05 0.70 6.70 35.75 0.24 0.94 16 27 O -0.35 -4.77 10.68 -35.23 -0.38 -5.15 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.63 6.05 -51.93 -0.31 0.31 16 30 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.14 0.64 8.06 -52.48 -0.42 0.21 16 32 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 33 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.08 0.88 7.89 -51.93 -0.41 0.47 16 35 H 0.10 1.02 7.45 -51.93 -0.39 0.64 16 36 H 0.10 1.10 8.11 -51.93 -0.42 0.68 16 37 H 0.12 1.34 6.65 -51.93 -0.35 0.99 16 38 H 0.10 1.24 7.83 -51.93 -0.41 0.83 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.08 1.70 7.29 -51.93 -0.38 1.32 16 41 H 0.07 1.26 7.97 -51.93 -0.41 0.84 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.08 0.92 7.99 -51.93 -0.41 0.50 16 46 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -35.19 375.54 -10.17 -45.36 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.83 Total: -1.02 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.81 Total: -0.72 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.87 Total: -48.99 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.29 Total: -17.25 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.19 -10.17 -45.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274691222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.526 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds