Wall clock time and date at job start Tue Mar 31 2020 17:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38344 * 120.44960 * 2 1 4 4 C 1.38835 * 118.50821 * 180.02562 * 3 2 1 5 5 C 1.38068 * 119.32537 * 359.97438 * 4 3 2 6 6 N 1.31944 * 120.85569 * 0.02562 * 5 4 3 7 7 C 1.32420 * 121.62320 * 359.97438 * 6 5 4 8 8 N 1.39006 * 119.70809 * 179.97438 * 7 6 5 9 9 C 1.47596 * 110.99827 * 96.10653 * 8 7 6 10 10 C 1.52892 * 87.78271 * 221.76376 * 9 8 7 11 11 C 1.47595 * 110.99816 * 0.02562 * 8 7 6 12 12 C 1.52457 * 114.26640 * 271.57880 * 10 9 8 13 13 N 1.46288 * 109.57070 * 272.35620 * 12 10 9 14 14 C 1.46498 * 118.73043 * 164.04187 * 13 12 10 15 15 C 1.53002 * 109.46929 * 89.99640 * 14 13 12 16 16 C 1.50696 * 109.46860 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00379 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00025 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00237 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46966 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47253 * 120.00063 * 20 18 16 23 23 H 1.48504 * 109.46947 * 240.00162 * 20 18 16 24 24 C 1.33719 * 122.54465 * 344.01991 * 13 12 10 25 25 O 1.21282 * 118.36154 * 183.34672 * 24 13 12 26 26 C 1.50164 * 123.27489 * 3.37045 * 24 13 12 27 27 O 1.42569 * 114.25551 * 139.69832 * 10 9 8 28 28 H 1.08994 * 109.47518 * 89.99748 * 1 2 3 29 29 H 1.09006 * 109.46871 * 209.99801 * 1 2 3 30 30 H 1.09002 * 109.47376 * 329.99622 * 1 2 3 31 31 H 1.08004 * 120.74536 * 0.02709 * 3 2 1 32 32 H 1.07993 * 120.34129 * 179.97438 * 4 3 2 33 33 H 1.08002 * 119.57504 * 180.02562 * 5 4 3 34 34 H 1.08991 * 113.50311 * 336.49368 * 9 8 7 35 35 H 1.09003 * 113.49824 * 107.03740 * 9 8 7 36 36 H 1.09004 * 113.49497 * 252.97251 * 11 8 7 37 37 H 1.09002 * 113.50095 * 23.50255 * 11 8 7 38 38 H 1.09004 * 109.45092 * 32.38953 * 12 10 9 39 39 H 1.09000 * 109.45121 * 152.34391 * 12 10 9 40 40 H 1.08993 * 109.47002 * 209.99896 * 14 13 12 41 41 H 1.09002 * 109.46837 * 330.00310 * 14 13 12 42 42 H 1.08999 * 109.47721 * 300.00360 * 15 14 13 43 43 H 1.09002 * 109.46814 * 60.00656 * 15 14 13 44 44 H 0.97000 * 120.00036 * 179.97438 * 19 18 16 45 45 H 1.08997 * 109.34742 * 102.48373 * 26 24 13 46 46 H 1.09007 * 109.34227 * 222.17199 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1926 0.0000 4 6 3.5957 1.1456 -0.0005 5 6 4.2307 -0.0804 -0.0005 6 7 3.5362 -1.2022 -0.0005 7 6 2.2120 -1.1991 0.0000 8 7 1.5202 -2.4048 -0.0005 9 6 1.1304 -2.7915 1.3695 10 6 1.5318 -4.2237 1.0157 11 6 2.4522 -3.5492 -0.0010 12 6 0.4127 -5.0531 0.3958 13 7 -0.3673 -5.6931 1.4551 14 6 -1.6851 -6.2417 1.1257 15 6 -1.5360 -7.7014 0.6919 16 6 -2.8916 -8.2655 0.3526 17 1 -3.7714 -7.6449 0.4373 18 6 -3.0086 -9.5739 -0.0662 19 7 -1.9373 -10.3298 -0.1689 20 14 -4.6888 -10.2730 -0.4876 21 1 -5.7240 -9.2267 -0.2900 22 1 -4.6986 -10.7184 -1.9041 23 1 -4.9797 -11.4297 0.3971 24 6 0.0763 -5.7972 2.7122 25 8 -0.6057 -6.3970 3.5160 26 6 1.3765 -5.2083 3.1786 27 8 2.2162 -4.9147 2.0581 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6877 2.1390 0.0004 32 1 4.1724 2.0586 -0.0010 33 1 5.3099 -0.1217 -0.0005 34 1 1.7551 -2.3433 2.1420 35 1 0.0648 -2.6750 1.5674 36 1 2.4996 -4.0706 -0.9571 37 1 3.4375 -3.3076 0.3977 38 1 -0.2369 -4.4045 -0.1921 39 1 0.8431 -5.8180 -0.2505 40 1 -2.3307 -6.1872 2.0022 41 1 -2.1262 -5.6645 0.3131 42 1 -0.8904 -7.7559 -0.1846 43 1 -1.0950 -8.2786 1.5046 44 1 -2.0197 -11.2504 -0.4632 45 1 1.1791 -4.2906 3.7326 46 1 1.8830 -5.9211 3.8294 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274691222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:41 Heat of formation + Delta-G solvation = -6.116401 kcal Electronic energy + Delta-G solvation = -28714.346113 eV Core-core repulsion = 24798.083203 eV Total energy + Delta-G solvation = -3916.262910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.99381 -41.41983 -40.06771 -37.91708 -37.00894 -35.13215 -34.61535 -33.16207 -32.01770 -30.31495 -28.88913 -28.13346 -27.19195 -26.69180 -26.32202 -23.88018 -23.20454 -22.73571 -21.37573 -19.59060 -19.12615 -18.74068 -18.17984 -17.74471 -17.41860 -17.12487 -16.57398 -16.47663 -16.30899 -15.91933 -15.62382 -15.42241 -14.99362 -14.82064 -14.66097 -14.34836 -14.32398 -14.25347 -14.07047 -13.63430 -13.55043 -13.42431 -13.26954 -13.03271 -12.87568 -12.67953 -12.50762 -12.49119 -12.10742 -11.89790 -11.77117 -11.45732 -11.24644 -11.10585 -10.60664 -10.60359 -10.49707 -10.36878 -9.72535 -9.38074 -8.23169 -6.35805 0.08951 0.32442 1.38620 1.40522 1.44214 1.53882 1.77858 2.28077 2.40746 2.59233 2.84948 3.03591 3.10469 3.16465 3.41827 3.60300 3.69342 3.95393 4.01171 4.09783 4.13963 4.15455 4.25556 4.32829 4.39263 4.43238 4.48049 4.57341 4.60381 4.63633 4.69869 4.75735 4.77137 4.82612 4.85611 4.91675 5.15100 5.21404 5.27659 5.33645 5.43409 5.55647 5.58258 5.70762 5.80656 6.06422 6.15379 6.39650 6.79784 6.95943 7.03075 7.33817 8.89520 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019573 B = 0.002661 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.178042 B =10518.370127 C =11054.567142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.134 4.134 3 C -0.070 4.070 4 C -0.174 4.174 5 C 0.095 3.905 6 N -0.531 5.531 7 C 0.243 3.757 8 N -0.417 5.417 9 C 0.004 3.996 10 C 0.067 3.933 11 C 0.041 3.959 12 C 0.118 3.882 13 N -0.598 5.598 14 C 0.130 3.870 15 C 0.025 3.975 16 C -0.541 4.541 17 H 0.067 0.933 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.972 3.028 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.282 1.282 24 C 0.471 3.529 25 O -0.589 6.589 26 C 0.063 3.937 27 O -0.357 6.357 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.177 0.823 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.091 0.909 42 H -0.004 1.004 43 H -0.026 1.026 44 H 0.264 0.736 45 H 0.117 0.883 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.153 28.631 0.141 31.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.137 4.137 3 C -0.096 4.096 4 C -0.194 4.194 5 C -0.062 4.062 6 N -0.243 5.243 7 C 0.014 3.986 8 N -0.138 5.138 9 C -0.122 4.122 10 C 0.026 3.974 11 C -0.088 4.088 12 C -0.004 4.004 13 N -0.329 5.329 14 C 0.008 3.992 15 C -0.013 4.013 16 C -0.579 4.579 17 H 0.085 0.915 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.796 3.204 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.208 1.208 24 C 0.259 3.741 25 O -0.470 6.470 26 C -0.016 4.016 27 O -0.274 6.274 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.181 0.819 32 H 0.184 0.816 33 H 0.194 0.806 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.015 0.985 43 H -0.008 1.008 44 H 0.073 0.927 45 H 0.135 0.865 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.003 27.411 -0.039 29.924 hybrid contribution -0.608 -0.362 0.241 0.748 sum 11.395 27.049 0.202 29.352 Atomic orbital electron populations 1.20684 0.88916 1.03368 1.03094 1.20697 0.98526 0.92223 1.02295 1.21831 0.94538 0.98351 0.94862 1.22448 0.95338 1.00234 1.01359 1.23031 1.01176 0.87285 0.94731 1.67520 1.07700 1.33585 1.15533 1.20331 0.88607 0.92129 0.97554 1.66633 1.25789 0.99535 1.21807 1.24350 1.03974 0.93463 0.90461 1.22832 0.93956 0.90274 0.90320 1.23726 0.96963 0.88860 0.99203 1.21773 0.92568 0.96427 0.89665 1.47735 1.19454 1.56653 1.09039 1.21528 0.82600 0.94869 1.00200 1.19162 0.96208 0.91914 0.93999 1.21573 0.94015 0.97524 1.44796 0.91453 1.26053 1.01198 0.97520 0.95254 1.70134 1.30965 1.08202 1.48177 0.85301 0.78931 0.78333 0.77878 1.18102 1.19938 1.20770 1.21589 0.89718 0.80417 0.82343 1.90734 1.58900 1.43841 1.53563 1.22808 0.86605 1.02799 0.89384 1.88103 1.34928 1.77037 1.27333 0.90639 0.91722 0.89850 0.81922 0.81625 0.80592 0.89187 0.87667 0.87743 0.87020 0.86890 0.91117 0.92131 0.89031 0.98542 1.00765 0.92743 0.86508 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.78 71.24 0.70 -0.68 16 2 C -0.13 -2.14 5.90 -19.63 -0.12 -2.26 16 3 C -0.07 -0.79 9.85 22.44 0.22 -0.57 16 4 C -0.17 -1.76 10.10 22.37 0.23 -1.53 16 5 C 0.10 1.34 11.17 84.64 0.95 2.29 16 6 N -0.53 -10.65 8.20 -193.26 -1.58 -12.24 16 7 C 0.24 4.88 5.84 133.05 0.78 5.66 16 8 N -0.42 -8.62 5.52 -733.25 -4.05 -12.67 16 9 C 0.00 0.09 5.63 83.66 0.47 0.56 16 10 C 0.07 1.61 1.29 -11.06 -0.01 1.59 16 11 C 0.04 0.89 6.82 83.64 0.57 1.46 16 12 C 0.12 3.40 5.85 86.24 0.50 3.90 16 13 N -0.60 -22.00 2.84 -825.68 -2.34 -24.35 16 14 C 0.13 5.67 5.20 86.38 0.45 6.12 16 15 C 0.03 1.41 5.29 29.85 0.16 1.56 16 16 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 17 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 18 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 19 N -0.93 -59.12 13.29 21.45 0.28 -58.84 16 20 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 C 0.47 17.64 7.57 87.65 0.66 18.30 16 25 O -0.59 -27.74 16.33 -3.04 -0.05 -27.79 16 26 C 0.06 1.66 6.70 71.07 0.48 2.13 16 27 O -0.36 -9.44 10.68 -148.98 -1.59 -11.04 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.99 6.05 -2.38 -0.01 0.97 16 30 H 0.08 0.77 8.10 -2.39 -0.02 0.75 16 31 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 32 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 33 H 0.18 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.09 1.71 7.89 -2.39 -0.02 1.69 16 35 H 0.11 1.98 7.45 -2.39 -0.02 1.97 16 36 H 0.10 2.21 8.11 -2.38 -0.02 2.20 16 37 H 0.11 2.55 6.65 -2.39 -0.02 2.53 16 38 H 0.11 2.85 7.83 -2.38 -0.02 2.83 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 2.82 7.29 -2.39 -0.02 2.81 16 41 H 0.09 3.49 7.97 -2.39 -0.02 3.47 16 42 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 43 H -0.03 -1.70 8.14 -2.39 -0.02 -1.72 16 44 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.12 2.34 7.99 -2.39 -0.02 2.32 16 46 H 0.14 3.40 8.14 -2.38 -0.02 3.38 16 Total: -1.00 -79.44 375.54 0.40 -79.04 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.98 Total: 13.13 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 6.73 Total: 7.35 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -7.69 Total: -108.09 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -1.64 Total: -38.82 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -79.44 0.40 -79.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274691222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.925 kcal (2) G-P(sol) polarization free energy of solvation -79.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds