Wall clock time and date at job start Tue Mar 31 2020 17:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38339 * 120.45369 * 2 1 4 4 C 1.38836 * 118.50902 * 180.26155 * 3 2 1 5 5 C 1.38063 * 119.32604 * 359.75177 * 4 3 2 6 6 N 1.31946 * 120.85529 * 0.02562 * 5 4 3 7 7 C 1.32421 * 121.62336 * 359.97438 * 6 5 4 8 8 N 1.39004 * 119.70466 * 179.97438 * 7 6 5 9 9 C 1.48043 * 111.00135 * 359.97438 * 8 7 6 10 10 C 1.53483 * 86.17962 * 222.76301 * 9 8 7 11 11 C 1.48280 * 111.07772 * 260.62886 * 8 7 6 12 12 C 1.52771 * 113.55118 * 137.71044 * 10 9 8 13 13 O 1.43379 * 108.26048 * 176.79051 * 12 10 9 14 14 C 1.42820 * 113.33607 * 294.36843 * 13 12 10 15 15 C 1.50271 * 110.49464 * 51.31287 * 14 13 12 16 16 O 1.21285 * 118.97197 * 161.60590 * 15 14 13 17 17 N 1.34271 * 122.05745 * 341.60191 * 15 14 13 18 18 C 1.46500 * 119.37791 * 181.96413 * 17 15 14 19 19 C 1.53001 * 109.47360 * 270.00717 * 18 17 15 20 20 C 1.50701 * 109.47039 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99993 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99783 * 179.97438 * 20 19 18 23 23 N 1.31508 * 120.00245 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99721 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47401 * 60.00236 * 24 22 20 26 26 H 1.48506 * 109.47081 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47221 * 299.99907 * 24 22 20 28 28 H 1.09002 * 109.47200 * 270.21321 * 1 2 3 29 29 H 1.09000 * 109.46908 * 30.21642 * 1 2 3 30 30 H 1.09005 * 109.46638 * 150.21248 * 1 2 3 31 31 H 1.08006 * 120.74228 * 0.03407 * 3 2 1 32 32 H 1.08001 * 120.33739 * 179.72322 * 4 3 2 33 33 H 1.08003 * 119.56989 * 180.02562 * 5 4 3 34 34 H 1.09002 * 113.78163 * 108.42094 * 9 8 7 35 35 H 1.08994 * 113.77998 * 337.10427 * 9 8 7 36 36 H 1.09004 * 113.67416 * 22.87268 * 11 8 7 37 37 H 1.08997 * 113.95199 * 251.49887 * 11 8 7 38 38 H 1.09003 * 109.70391 * 296.48737 * 12 10 9 39 39 H 1.09004 * 109.69889 * 57.09716 * 12 10 9 40 40 H 1.09000 * 109.29828 * 171.62841 * 14 13 12 41 41 H 1.09005 * 109.29907 * 290.99750 * 14 13 12 42 42 H 1.09001 * 109.47202 * 30.00846 * 18 17 15 43 43 H 1.08999 * 109.47101 * 150.00619 * 18 17 15 44 44 H 1.09001 * 109.46681 * 299.99337 * 19 18 17 45 45 H 1.08993 * 109.47488 * 59.99956 * 19 18 17 46 46 H 0.97005 * 120.00060 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1925 0.0000 4 6 3.5957 1.1454 -0.0056 5 6 4.2307 -0.0805 -0.0057 6 7 3.5361 -1.2024 -0.0011 7 6 2.2119 -1.1991 0.0043 8 7 1.5202 -2.4048 0.0085 9 6 2.4550 -3.5528 0.0053 10 6 1.5139 -4.1844 -1.0297 11 6 1.0539 -2.7568 -1.3544 12 6 2.2459 -4.8658 -2.1846 13 8 1.2688 -5.4775 -3.0372 14 6 0.5607 -6.5473 -2.4096 15 6 0.0073 -6.1057 -1.0841 16 8 -0.8857 -6.7504 -0.5762 17 7 0.4706 -5.0199 -0.4444 18 6 -0.0819 -4.6673 0.8658 19 6 -1.2818 -3.7364 0.6796 20 6 -1.8498 -3.3733 2.0274 21 1 -1.4001 -3.7673 2.9268 22 6 -2.9433 -2.5379 2.1122 23 7 -3.4905 -2.0576 1.0171 24 14 -3.6478 -2.0883 3.7829 25 1 -2.6079 -1.4010 4.5900 26 1 -4.8123 -1.1847 3.6022 27 1 -4.0836 -3.3223 4.4847 28 1 -0.3634 0.0038 1.0277 29 1 -0.3633 0.8880 -0.5172 30 1 -0.3633 -0.8920 -0.5106 31 1 1.6878 2.1390 0.0006 32 1 4.1725 2.0585 -0.0102 33 1 5.3099 -0.1218 -0.0096 34 1 2.4923 -4.0918 0.9520 35 1 3.4432 -3.3138 -0.3873 36 1 1.6271 -2.2804 -2.1498 37 1 -0.0233 -2.6627 -1.4915 38 1 2.8134 -4.1251 -2.7481 39 1 2.9209 -5.6272 -1.7936 40 1 -0.2588 -6.8642 -3.0546 41 1 1.2389 -7.3866 -2.2553 42 1 -0.4014 -5.5731 1.3811 43 1 0.6812 -4.1623 1.4580 44 1 -0.9623 -2.8306 0.1643 45 1 -2.0450 -4.2413 0.0874 46 1 -4.2602 -1.4702 1.0768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274692299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:45 Heat of formation + Delta-G solvation = 22.687784 kcal Electronic energy + Delta-G solvation = -30262.813825 eV Core-core repulsion = 26347.799958 eV Total energy + Delta-G solvation = -3915.013866 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.76193 -40.09361 -38.46017 -37.37796 -34.70812 -33.51317 -32.94717 -31.71763 -29.96456 -29.41695 -27.53246 -26.88340 -26.31792 -25.23466 -24.11959 -22.51062 -21.63153 -21.00352 -20.68542 -18.20085 -17.68420 -17.20130 -16.76888 -16.53167 -16.00052 -15.67819 -15.19772 -15.14962 -14.92544 -14.47911 -14.31681 -14.07206 -13.76293 -13.48526 -13.32214 -13.13883 -12.85363 -12.47749 -12.28221 -12.23378 -12.14127 -11.95222 -11.77973 -11.51289 -11.19781 -11.04639 -10.92414 -10.84518 -10.64293 -10.40712 -9.91351 -9.77529 -9.63629 -9.51849 -9.26715 -9.20804 -8.89206 -8.22647 -8.15540 -8.01609 -5.91006 -3.90476 1.16268 1.33814 2.84020 3.14214 3.37850 3.41741 3.45513 3.53729 3.70765 3.87479 4.31090 4.39376 4.53850 4.54631 4.66216 4.83892 4.91051 5.06445 5.09084 5.15468 5.26528 5.31394 5.34362 5.45041 5.45827 5.50589 5.70601 5.71528 5.78919 5.88742 5.97283 6.07968 6.22473 6.27188 6.29542 6.44742 6.56822 6.63482 6.68701 6.84509 6.91823 7.06507 7.31359 7.72815 7.81514 7.99438 8.06530 8.13129 8.43820 8.55885 9.14188 9.70725 11.20276 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.007663 B = 0.006752 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.823262 B = 4145.948567 C = 7119.106529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.112 4.112 3 C -0.072 4.072 4 C -0.190 4.190 5 C 0.102 3.898 6 N -0.515 5.515 7 C 0.274 3.726 8 N -0.404 5.404 9 C 0.012 3.988 10 C 0.108 3.892 11 C 0.016 3.984 12 C 0.065 3.935 13 O -0.368 6.368 14 C 0.048 3.952 15 C 0.482 3.518 16 O -0.532 6.532 17 N -0.572 5.572 18 C 0.117 3.883 19 C 0.019 3.981 20 C -0.507 4.507 21 H 0.050 0.950 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.885 3.115 25 H -0.279 1.279 26 H -0.289 1.289 27 H -0.278 1.278 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.151 0.849 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.068 0.932 40 H 0.128 0.872 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.011 0.989 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.105 2.504 -8.159 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.116 4.116 3 C -0.098 4.098 4 C -0.211 4.211 5 C -0.056 4.056 6 N -0.228 5.228 7 C 0.043 3.957 8 N -0.122 5.122 9 C -0.117 4.117 10 C 0.019 3.981 11 C -0.112 4.112 12 C -0.013 4.013 13 O -0.286 6.286 14 C -0.031 4.031 15 C 0.268 3.732 16 O -0.409 6.409 17 N -0.304 5.304 18 C -0.003 4.003 19 C -0.019 4.019 20 C -0.546 4.546 21 H 0.069 0.931 22 C -0.139 4.139 23 N -0.533 5.533 24 Si 0.714 3.286 25 H -0.204 1.204 26 H -0.214 1.214 27 H -0.204 1.204 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.168 0.832 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.097 0.903 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.145 0.855 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.030 0.970 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.383 1.582 -7.599 18.129 hybrid contribution -0.254 1.331 0.877 1.614 sum 16.130 2.913 -6.722 17.715 Atomic orbital electron populations 1.20718 0.88338 1.03030 1.04067 1.20652 0.98487 0.91913 1.00573 1.21433 0.93967 0.98020 0.96350 1.21964 0.95184 0.99309 1.04624 1.22393 0.99632 0.87460 0.96072 1.67512 1.07616 1.31877 1.15758 1.20390 0.87963 0.92506 0.94811 1.66411 1.23292 0.98400 1.24129 1.24273 0.96525 0.90550 1.00384 1.22177 0.89875 0.91463 0.94539 1.24548 1.04483 0.93386 0.88736 1.22951 0.90284 0.97505 0.90534 1.88140 1.52690 1.49471 1.38286 1.22798 0.97695 0.90255 0.92390 1.20931 0.83402 0.81158 0.87673 1.90764 1.29118 1.53966 1.67039 1.47528 1.36868 1.24743 1.21219 1.21987 0.98054 0.99881 0.80376 1.19396 0.90988 0.94216 0.97294 1.21006 1.13052 1.28096 0.92437 0.93137 1.24877 0.96761 0.96263 0.95985 1.69948 1.22942 1.33542 1.26860 0.86771 0.78518 0.78321 0.85021 1.20445 1.21434 1.20393 0.89865 0.92455 0.89738 0.84925 0.85256 0.83172 0.88331 0.87275 0.90272 0.86781 0.86864 0.91407 0.85458 0.89837 0.91549 0.90698 0.94668 0.97019 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 9.77 36.01 0.35 -1.41 16 2 C -0.11 -1.70 5.87 -104.26 -0.61 -2.32 16 3 C -0.07 -0.88 9.85 -39.32 -0.39 -1.27 16 4 C -0.19 -2.02 10.10 -39.42 -0.40 -2.42 16 5 C 0.10 1.15 11.17 -17.57 -0.20 0.96 16 6 N -0.51 -7.12 8.20 -12.44 -0.10 -7.22 16 7 C 0.27 4.24 5.89 -155.01 -0.91 3.33 16 8 N -0.40 -6.55 3.81 -177.61 -0.68 -7.22 16 9 C 0.01 0.16 6.21 -2.95 -0.02 0.14 16 10 C 0.11 1.53 1.56 -134.82 -0.21 1.32 16 11 C 0.02 0.24 5.35 -2.83 -0.02 0.22 16 12 C 0.07 0.71 6.09 37.04 0.23 0.94 16 13 O -0.37 -4.72 10.84 -35.23 -0.38 -5.10 16 14 C 0.05 0.63 6.94 35.80 0.25 0.88 16 15 C 0.48 8.74 7.64 -11.42 -0.09 8.65 16 16 O -0.53 -11.95 16.48 5.55 0.09 -11.86 16 17 N -0.57 -10.23 2.67 -161.83 -0.43 -10.66 16 18 C 0.12 2.51 4.49 -4.04 -0.02 2.49 16 19 C 0.02 0.48 5.02 -27.88 -0.14 0.34 16 20 C -0.51 -14.33 9.11 -34.44 -0.31 -14.64 16 21 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 24 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 30 H 0.08 1.60 4.81 -51.93 -0.25 1.35 16 31 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 34 H 0.10 1.43 6.92 -51.93 -0.36 1.07 16 35 H 0.11 1.32 6.61 -51.93 -0.34 0.98 16 36 H 0.08 1.03 7.66 -51.93 -0.40 0.63 16 37 H 0.11 2.06 5.97 -51.93 -0.31 1.75 16 38 H 0.11 0.99 7.86 -51.93 -0.41 0.59 16 39 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 40 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.55 7.35 -51.93 -0.38 1.17 16 43 H 0.07 1.55 5.57 -51.93 -0.29 1.26 16 44 H 0.04 0.90 4.40 -51.93 -0.23 0.67 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -33.75 362.84 -9.21 -42.96 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.31 Total: 3.42 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -2.58 Total: -1.12 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.47 Total: -50.69 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.29 Total: -16.96 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.75 -9.21 -42.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274692299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.649 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds