Wall clock time and date at job start Tue Mar 31 2020 17:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38339 * 120.45369 * 2 1 4 4 C 1.38836 * 118.50902 * 180.26155 * 3 2 1 5 5 C 1.38063 * 119.32604 * 359.75177 * 4 3 2 6 6 N 1.31946 * 120.85529 * 0.02562 * 5 4 3 7 7 C 1.32421 * 121.62336 * 359.97438 * 6 5 4 8 8 N 1.39004 * 119.70466 * 179.97438 * 7 6 5 9 9 C 1.48043 * 111.00135 * 359.97438 * 8 7 6 10 10 C 1.53483 * 86.17962 * 222.76301 * 9 8 7 11 11 C 1.48280 * 111.07772 * 260.62886 * 8 7 6 12 12 C 1.52771 * 113.55118 * 137.71044 * 10 9 8 13 13 O 1.43379 * 108.26048 * 176.79051 * 12 10 9 14 14 C 1.42820 * 113.33607 * 294.36843 * 13 12 10 15 15 C 1.50271 * 110.49464 * 51.31287 * 14 13 12 16 16 O 1.21285 * 118.97197 * 161.60590 * 15 14 13 17 17 N 1.34271 * 122.05745 * 341.60191 * 15 14 13 18 18 C 1.46500 * 119.37791 * 181.96413 * 17 15 14 19 19 C 1.53001 * 109.47360 * 270.00717 * 18 17 15 20 20 C 1.50701 * 109.47039 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99993 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99783 * 179.97438 * 20 19 18 23 23 N 1.31508 * 120.00245 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99721 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47401 * 60.00236 * 24 22 20 26 26 H 1.48506 * 109.47081 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47221 * 299.99907 * 24 22 20 28 28 H 1.09002 * 109.47200 * 270.21321 * 1 2 3 29 29 H 1.09000 * 109.46908 * 30.21642 * 1 2 3 30 30 H 1.09005 * 109.46638 * 150.21248 * 1 2 3 31 31 H 1.08006 * 120.74228 * 0.03407 * 3 2 1 32 32 H 1.08001 * 120.33739 * 179.72322 * 4 3 2 33 33 H 1.08003 * 119.56989 * 180.02562 * 5 4 3 34 34 H 1.09002 * 113.78163 * 108.42094 * 9 8 7 35 35 H 1.08994 * 113.77998 * 337.10427 * 9 8 7 36 36 H 1.09004 * 113.67416 * 22.87268 * 11 8 7 37 37 H 1.08997 * 113.95199 * 251.49887 * 11 8 7 38 38 H 1.09003 * 109.70391 * 296.48737 * 12 10 9 39 39 H 1.09004 * 109.69889 * 57.09716 * 12 10 9 40 40 H 1.09000 * 109.29828 * 171.62841 * 14 13 12 41 41 H 1.09005 * 109.29907 * 290.99750 * 14 13 12 42 42 H 1.09001 * 109.47202 * 30.00846 * 18 17 15 43 43 H 1.08999 * 109.47101 * 150.00619 * 18 17 15 44 44 H 1.09001 * 109.46681 * 299.99337 * 19 18 17 45 45 H 1.08993 * 109.47488 * 59.99956 * 19 18 17 46 46 H 0.97005 * 120.00060 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1925 0.0000 4 6 3.5957 1.1454 -0.0056 5 6 4.2307 -0.0805 -0.0057 6 7 3.5361 -1.2024 -0.0011 7 6 2.2119 -1.1991 0.0043 8 7 1.5202 -2.4048 0.0085 9 6 2.4550 -3.5528 0.0053 10 6 1.5139 -4.1844 -1.0297 11 6 1.0539 -2.7568 -1.3544 12 6 2.2459 -4.8658 -2.1846 13 8 1.2688 -5.4775 -3.0372 14 6 0.5607 -6.5473 -2.4096 15 6 0.0073 -6.1057 -1.0841 16 8 -0.8857 -6.7504 -0.5762 17 7 0.4706 -5.0199 -0.4444 18 6 -0.0819 -4.6673 0.8658 19 6 -1.2818 -3.7364 0.6796 20 6 -1.8498 -3.3733 2.0274 21 1 -1.4001 -3.7673 2.9268 22 6 -2.9433 -2.5379 2.1122 23 7 -3.4905 -2.0576 1.0171 24 14 -3.6478 -2.0883 3.7829 25 1 -2.6079 -1.4010 4.5900 26 1 -4.8123 -1.1847 3.6022 27 1 -4.0836 -3.3223 4.4847 28 1 -0.3634 0.0038 1.0277 29 1 -0.3633 0.8880 -0.5172 30 1 -0.3633 -0.8920 -0.5106 31 1 1.6878 2.1390 0.0006 32 1 4.1725 2.0585 -0.0102 33 1 5.3099 -0.1218 -0.0096 34 1 2.4923 -4.0918 0.9520 35 1 3.4432 -3.3138 -0.3873 36 1 1.6271 -2.2804 -2.1498 37 1 -0.0233 -2.6627 -1.4915 38 1 2.8134 -4.1251 -2.7481 39 1 2.9209 -5.6272 -1.7936 40 1 -0.2588 -6.8642 -3.0546 41 1 1.2389 -7.3866 -2.2553 42 1 -0.4014 -5.5731 1.3811 43 1 0.6812 -4.1623 1.4580 44 1 -0.9623 -2.8306 0.1643 45 1 -2.0450 -4.2413 0.0874 46 1 -4.2602 -1.4702 1.0768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274692299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:45 Heat of formation + Delta-G solvation = -0.518065 kcal Electronic energy + Delta-G solvation = -30263.820106 eV Core-core repulsion = 26347.799958 eV Total energy + Delta-G solvation = -3916.020147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.93712 -41.24893 -39.69140 -38.52878 -36.31297 -34.98084 -34.53043 -32.95605 -31.70330 -30.53231 -28.84077 -28.12906 -27.55155 -26.48533 -25.77245 -23.65244 -22.86624 -22.66445 -21.93749 -19.47187 -18.96563 -18.44034 -18.30360 -17.75613 -17.46562 -16.88764 -16.52119 -16.35609 -16.16105 -16.09270 -15.63614 -15.22793 -15.04135 -14.75038 -14.53074 -14.43330 -14.24856 -14.06737 -13.83446 -13.57004 -13.41867 -13.35584 -12.98957 -12.91657 -12.79573 -12.67675 -12.63963 -12.17655 -12.17287 -11.81492 -11.67478 -11.39776 -11.28989 -10.91487 -10.54938 -10.47659 -10.41795 -10.24017 -9.69085 -9.13790 -8.14825 -6.22964 0.17823 0.36543 1.35508 1.38830 1.42137 1.46163 1.81545 2.41791 2.50059 2.69906 2.85834 3.18375 3.23621 3.28361 3.42478 3.63041 3.81676 4.00810 4.07271 4.13007 4.17924 4.20362 4.32117 4.40186 4.48218 4.53460 4.58254 4.60873 4.64950 4.69592 4.75085 4.81344 4.83283 4.86730 4.95962 5.08740 5.22996 5.27707 5.35488 5.43210 5.55534 5.66728 5.74999 5.78606 5.96486 6.24449 6.28367 6.46798 6.88491 7.01149 7.05902 7.42526 8.96302 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.007663 B = 0.006752 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3652.823262 B = 4145.948567 C = 7119.106529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.144 4.144 3 C -0.070 4.070 4 C -0.178 4.178 5 C 0.103 3.897 6 N -0.522 5.522 7 C 0.256 3.744 8 N -0.439 5.439 9 C 0.026 3.974 10 C 0.105 3.895 11 C 0.023 3.977 12 C 0.069 3.931 13 O -0.372 6.372 14 C 0.062 3.938 15 C 0.470 3.530 16 O -0.588 6.588 17 N -0.575 5.575 18 C 0.137 3.863 19 C 0.036 3.964 20 C -0.532 4.532 21 H 0.049 0.951 22 C 0.013 3.987 23 N -0.922 5.922 24 Si 0.952 3.048 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.275 1.275 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.152 0.848 32 H 0.169 0.831 33 H 0.189 0.811 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.144 0.856 39 H 0.098 0.902 40 H 0.137 0.863 41 H 0.123 0.877 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.032 0.968 45 H -0.041 1.041 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.838 3.706 -8.720 22.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C -0.096 4.096 4 C -0.198 4.198 5 C -0.054 4.054 6 N -0.235 5.235 7 C 0.027 3.973 8 N -0.157 5.157 9 C -0.103 4.103 10 C 0.018 3.982 11 C -0.105 4.105 12 C -0.008 4.008 13 O -0.290 6.290 14 C -0.018 4.018 15 C 0.260 3.740 16 O -0.469 6.469 17 N -0.305 5.305 18 C 0.016 3.984 19 C -0.001 4.001 20 C -0.571 4.571 21 H 0.067 0.933 22 C -0.186 4.186 23 N -0.563 5.563 24 Si 0.777 3.223 25 H -0.193 1.193 26 H -0.206 1.206 27 H -0.200 1.200 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.170 0.830 32 H 0.186 0.814 33 H 0.206 0.794 34 H 0.105 0.895 35 H 0.152 0.848 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.162 0.838 39 H 0.116 0.884 40 H 0.155 0.845 41 H 0.140 0.860 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.051 0.949 45 H -0.023 1.023 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 20.151 2.791 -8.183 21.928 hybrid contribution -1.347 1.084 1.040 2.018 sum 18.804 3.876 -7.143 20.485 Atomic orbital electron populations 1.20454 0.90643 1.02238 1.01474 1.20584 0.97094 0.93490 1.03590 1.21728 0.95118 0.97612 0.95153 1.22381 0.94371 1.00750 1.02331 1.23134 1.01307 0.87004 0.93984 1.67526 1.06542 1.33233 1.16244 1.20366 0.88804 0.92043 0.96120 1.66342 1.24831 0.99762 1.24804 1.24233 0.97044 0.89339 0.99671 1.22493 0.88977 0.90820 0.95929 1.24397 1.02138 0.94506 0.89433 1.23217 0.89665 0.98734 0.89210 1.88150 1.53038 1.49498 1.38315 1.22799 0.98818 0.91133 0.89004 1.22088 0.82512 0.80303 0.89136 1.90729 1.31626 1.55736 1.68765 1.47522 1.37595 1.25353 1.20048 1.21404 0.96700 0.97584 0.82760 1.19146 0.91130 0.94355 0.95501 1.21378 1.13837 1.28551 0.93286 0.93274 1.25709 0.96998 0.95965 0.99888 1.70083 1.23249 1.33853 1.29070 0.85709 0.78038 0.78167 0.80343 1.19285 1.20575 1.19994 0.93466 0.90831 0.92894 0.83042 0.81370 0.79418 0.89487 0.84796 0.87873 0.91144 0.83795 0.88432 0.84492 0.85957 0.94021 0.89805 0.94945 1.02297 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.28 9.77 71.24 0.70 -2.58 16 2 C -0.14 -4.37 5.87 -19.63 -0.12 -4.49 16 3 C -0.07 -1.58 9.85 22.44 0.22 -1.36 16 4 C -0.18 -3.04 10.10 22.37 0.23 -2.82 16 5 C 0.10 1.91 11.17 84.63 0.95 2.85 16 6 N -0.52 -13.08 8.20 -193.26 -1.59 -14.67 16 7 C 0.26 7.80 5.89 133.05 0.78 8.59 16 8 N -0.44 -14.56 3.81 -715.84 -2.73 -17.29 16 9 C 0.03 0.68 6.21 86.24 0.54 1.21 16 10 C 0.11 2.92 1.56 5.02 0.01 2.93 16 11 C 0.02 0.71 5.35 86.19 0.46 1.17 16 12 C 0.07 1.28 6.09 71.91 0.44 1.72 16 13 O -0.37 -8.58 10.84 -148.98 -1.61 -10.19 16 14 C 0.06 1.51 6.94 71.10 0.49 2.01 16 15 C 0.47 17.57 7.64 87.60 0.67 18.24 16 16 O -0.59 -28.01 16.48 -3.04 -0.05 -28.06 16 17 N -0.58 -21.39 2.67 -784.58 -2.09 -23.48 16 18 C 0.14 6.33 4.49 86.38 0.39 6.72 16 19 C 0.04 2.04 5.02 29.85 0.15 2.19 16 20 C -0.53 -31.86 9.11 25.60 0.23 -31.63 16 21 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 22 C 0.01 0.75 5.46 84.66 0.46 1.22 16 23 N -0.92 -57.14 13.29 21.45 0.28 -56.85 16 24 Si 0.95 46.34 29.54 68.60 2.03 48.37 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 2.26 8.10 -2.39 -0.02 2.24 16 30 H 0.05 2.21 4.81 -2.38 -0.01 2.20 16 31 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.19 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.09 2.50 6.92 -2.39 -0.02 2.48 16 35 H 0.13 2.86 6.61 -2.39 -0.02 2.85 16 36 H 0.10 2.61 7.66 -2.39 -0.02 2.59 16 37 H 0.07 2.79 5.97 -2.39 -0.01 2.78 16 38 H 0.14 1.87 7.86 -2.39 -0.02 1.85 16 39 H 0.10 1.33 8.13 -2.38 -0.02 1.31 16 40 H 0.14 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.04 2.09 7.35 -2.39 -0.02 2.08 16 43 H 0.08 3.68 5.57 -2.39 -0.01 3.66 16 44 H 0.03 1.82 4.40 -2.39 -0.01 1.81 16 45 H -0.04 -2.72 8.14 -2.39 -0.02 -2.74 16 46 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -80.90 362.84 1.84 -79.06 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 1.00 Total: 17.14 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 6.60 Total: 5.97 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -6.12 Total: -112.28 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -1.67 Total: -38.25 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -80.90 1.84 -79.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274692299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.541 kcal (2) G-P(sol) polarization free energy of solvation -80.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds