Wall clock time and date at job start Tue Mar 31 2020 16:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38072 * 119.57123 * 2 1 4 4 C 1.38844 * 119.32576 * 179.97438 * 3 2 1 5 5 C 1.38342 * 118.50555 * 0.02562 * 4 3 2 6 6 C 1.39095 * 119.09890 * 359.97438 * 5 4 3 7 7 N 1.39003 * 119.70005 * 179.97438 * 6 5 4 8 8 C 1.47577 * 110.99748 * 83.91146 * 7 6 5 9 9 C 1.52990 * 87.80308 * 138.29594 * 8 7 6 10 10 C 1.47580 * 110.99695 * 180.02562 * 7 6 5 11 11 C 1.52661 * 113.96835 * 220.61255 * 9 8 7 12 12 O 1.43399 * 108.26413 * 272.21314 * 11 9 8 13 13 C 1.42821 * 113.35134 * 294.57618 * 12 11 9 14 14 C 1.50276 * 110.53164 * 51.37649 * 13 12 11 15 15 O 1.21281 * 118.99585 * 161.41848 * 14 13 12 16 16 N 1.34312 * 122.01360 * 341.44054 * 14 13 12 17 17 C 1.46503 * 119.40572 * 182.01582 * 16 14 13 18 18 C 1.52993 * 109.47020 * 269.97838 * 17 16 14 19 19 C 1.50708 * 109.46988 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99330 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00218 * 180.02562 * 19 18 17 22 22 N 1.31505 * 120.00089 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99822 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47001 * 90.00163 * 23 21 19 25 25 H 1.48502 * 109.46980 * 210.00290 * 23 21 19 26 26 H 1.48497 * 109.47218 * 330.00163 * 23 21 19 27 27 N 1.31944 * 119.57486 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47390 * 269.97951 * 1 2 3 29 29 H 1.09000 * 109.47445 * 29.98115 * 1 2 3 30 30 H 1.08995 * 109.47143 * 149.98181 * 1 2 3 31 31 H 1.07995 * 120.33648 * 359.97438 * 3 2 1 32 32 H 1.07994 * 120.74150 * 180.02562 * 4 3 2 33 33 H 1.07998 * 120.44362 * 180.27899 * 5 4 3 34 34 H 1.09002 * 113.49177 * 253.02396 * 8 7 6 35 35 H 1.08995 * 113.50214 * 23.56026 * 8 7 6 36 36 H 1.08997 * 113.49755 * 336.43305 * 10 7 6 37 37 H 1.09000 * 113.49325 * 106.96349 * 10 7 6 38 38 H 1.09000 * 109.70411 * 31.90687 * 11 9 8 39 39 H 1.09001 * 109.70171 * 152.51661 * 11 9 8 40 40 H 1.08998 * 109.26031 * 171.64907 * 13 12 11 41 41 H 1.09000 * 109.26429 * 291.10628 * 13 12 11 42 42 H 1.09005 * 109.46897 * 29.98198 * 17 16 14 43 43 H 1.09002 * 109.46982 * 149.97717 * 17 16 14 44 44 H 1.09000 * 109.47589 * 299.99459 * 18 17 16 45 45 H 1.08997 * 109.47357 * 60.00571 * 18 17 16 46 46 H 0.97005 * 120.00173 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1883 1.2009 0.0000 4 6 3.5767 1.1949 0.0005 5 6 4.2318 -0.0236 0.0005 6 6 3.4815 -1.1949 0.0005 7 7 4.1268 -2.4261 -0.0001 8 6 4.5022 -2.8270 1.3697 9 6 4.0476 -4.2444 1.0163 10 6 3.1519 -3.5340 -0.0006 11 6 3.2825 -4.9472 2.1348 12 8 4.2318 -5.6082 2.9822 13 6 4.9312 -6.6687 2.3296 14 6 5.5194 -6.1918 1.0316 15 8 6.4117 -6.8339 0.5194 16 7 5.0873 -5.0759 0.4215 17 6 5.6709 -4.6875 -0.8650 18 6 6.8822 -3.7847 -0.6237 19 6 7.4829 -3.3857 -1.9470 20 1 7.0441 -3.7403 -2.8680 21 6 8.5924 -2.5680 -1.9820 22 7 9.1162 -2.2194 -3.1368 23 14 9.3508 -1.9541 -0.3890 24 1 10.3828 -2.9175 0.0713 25 1 9.9787 -0.6281 -0.6185 26 1 8.2938 -1.8287 0.6464 27 7 2.1581 -1.1475 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6468 2.1353 -0.0004 32 1 4.1327 2.1207 0.0010 33 1 5.3109 -0.0648 0.0055 34 1 5.5714 -2.7501 1.5673 35 1 3.8948 -2.3558 2.1424 36 1 2.1770 -3.2552 0.3992 37 1 3.0838 -4.0525 -0.9570 38 1 2.7214 -4.2136 2.7136 39 1 2.5982 -5.6803 1.7075 40 1 5.7318 -7.0241 2.9782 41 1 4.2393 -7.4874 2.1316 42 1 5.9850 -5.5803 -1.4058 43 1 4.9278 -4.1491 -1.4532 44 1 6.5681 -2.8919 -0.0830 45 1 7.6253 -4.3231 -0.0355 46 1 9.8971 -1.6444 -3.1614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274841757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:49 Heat of formation + Delta-G solvation = 27.871172 kcal Electronic energy + Delta-G solvation = -29871.245184 eV Core-core repulsion = 25956.456086 eV Total energy + Delta-G solvation = -3914.789098 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.95279 -40.21149 -38.73699 -37.49967 -34.93624 -33.18895 -32.83784 -32.08905 -30.48686 -29.72405 -27.97880 -27.28690 -26.25590 -25.54145 -24.14113 -22.52219 -21.81133 -20.96056 -20.64044 -18.31716 -17.76642 -17.19641 -16.85915 -16.55042 -16.20431 -15.99587 -15.53235 -15.28153 -15.09732 -14.63295 -14.18663 -14.07174 -14.00003 -13.72092 -13.60948 -13.18800 -13.01187 -12.76027 -12.52482 -12.47964 -12.40875 -12.13377 -12.03276 -11.85614 -11.46774 -11.35150 -10.96865 -10.85697 -10.59574 -10.25778 -10.00075 -9.91307 -9.74034 -9.65278 -9.40744 -9.27026 -9.00050 -8.44072 -8.36436 -8.19754 -5.95465 -3.90813 1.05444 1.24777 2.71877 3.02606 3.35398 3.42214 3.45079 3.45407 3.60612 3.75582 4.12993 4.29562 4.39471 4.52492 4.53884 4.67716 4.76527 4.98078 5.02807 5.12808 5.18797 5.20713 5.25691 5.33050 5.37282 5.39498 5.40085 5.45800 5.55208 5.62439 5.71253 5.81332 5.87536 5.92471 6.14763 6.18998 6.24338 6.49503 6.52213 6.54777 6.74927 6.85726 7.20318 7.44261 7.46415 7.80415 7.88943 7.91570 8.36481 8.62077 9.09245 9.67690 11.18397 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.008418 B = 0.005973 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.492548 B = 4686.275691 C = 7200.018701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.140 3.860 3 C -0.193 4.193 4 C -0.060 4.060 5 C -0.159 4.159 6 C 0.282 3.718 7 N -0.401 5.401 8 C 0.009 3.991 9 C 0.107 3.893 10 C 0.008 3.992 11 C 0.069 3.931 12 O -0.368 6.368 13 C 0.048 3.952 14 C 0.481 3.519 15 O -0.530 6.530 16 N -0.574 5.574 17 C 0.127 3.873 18 C -0.017 4.017 19 C -0.504 4.504 20 H 0.070 0.930 21 C 0.069 3.931 22 N -0.906 5.906 23 Si 0.878 3.122 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.268 1.268 27 N -0.516 5.516 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.128 0.872 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.029 0.971 45 H 0.007 0.993 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.812 2.798 12.756 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.001 3.999 3 C -0.213 4.213 4 C -0.086 4.086 5 C -0.181 4.181 6 C 0.052 3.948 7 N -0.120 5.120 8 C -0.119 4.119 9 C 0.019 3.981 10 C -0.121 4.121 11 C -0.009 4.009 12 O -0.286 6.286 13 C -0.032 4.032 14 C 0.268 3.732 15 O -0.407 6.407 16 N -0.305 5.305 17 C 0.007 3.993 18 C -0.055 4.055 19 C -0.543 4.543 20 H 0.088 0.912 21 C -0.132 4.132 22 N -0.546 5.546 23 Si 0.706 3.294 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.193 1.193 27 N -0.230 5.230 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.160 0.840 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.133 0.867 39 H 0.088 0.912 40 H 0.146 0.854 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.048 0.952 45 H 0.025 0.975 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.093 1.883 12.048 22.655 hybrid contribution 0.583 1.403 0.789 1.712 sum -18.509 3.286 12.837 22.764 Atomic orbital electron populations 1.20689 0.88984 1.03383 1.02814 1.21013 0.96541 0.87978 0.94342 1.21817 0.94906 0.98992 1.05593 1.21512 0.94280 0.98164 0.94605 1.21734 1.02092 0.91522 1.02709 1.20450 0.87886 0.92789 0.93668 1.66854 1.24540 0.98434 1.22127 1.24370 1.04496 0.93753 0.89277 1.21762 0.90244 0.91216 0.94928 1.24133 0.96462 0.90711 1.00837 1.22865 0.90491 0.96770 0.90780 1.88145 1.54684 1.48796 1.36978 1.22810 0.97641 0.90362 0.92341 1.20992 0.83577 0.81227 0.87372 1.90774 1.29231 1.55097 1.65551 1.47517 1.37061 1.22851 1.23099 1.21757 0.96864 0.99444 0.81199 1.19850 0.92696 0.94851 0.98119 1.20943 1.11939 1.29278 0.92121 0.91170 1.24917 0.96604 0.95942 0.95707 1.69910 1.23211 1.37053 1.24429 0.86819 0.79725 0.78072 0.84830 1.20468 1.21617 1.19254 1.67349 1.09031 1.30061 1.16580 0.90619 0.90819 0.90573 0.85103 0.84647 0.84030 0.87698 0.90027 0.87108 0.88439 0.86748 0.91180 0.85405 0.89632 0.90866 0.90024 0.95240 0.97476 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.17 36.00 0.37 -0.41 16 2 C 0.14 1.58 6.78 -82.61 -0.56 1.02 16 3 C -0.19 -2.03 9.73 -39.42 -0.38 -2.41 16 4 C -0.06 -0.71 10.17 -39.32 -0.40 -1.10 16 5 C -0.16 -2.35 10.00 -39.23 -0.39 -2.75 16 6 C 0.28 4.28 5.85 -155.02 -0.91 3.37 16 7 N -0.40 -6.42 4.35 -182.48 -0.79 -7.21 16 8 C 0.01 0.13 6.20 -7.24 -0.04 0.08 16 9 C 0.11 1.45 1.67 -132.94 -0.22 1.23 16 10 C 0.01 0.10 5.98 -7.23 -0.04 0.06 16 11 C 0.07 0.70 6.14 36.98 0.23 0.92 16 12 O -0.37 -4.41 10.84 -35.23 -0.38 -4.79 16 13 C 0.05 0.59 6.93 35.80 0.25 0.84 16 14 C 0.48 8.35 7.64 -11.40 -0.09 8.27 16 15 O -0.53 -11.47 16.49 5.56 0.09 -11.38 16 16 N -0.57 -9.91 2.69 -160.32 -0.43 -10.34 16 17 C 0.13 2.69 4.49 -4.04 -0.02 2.67 16 18 C -0.02 -0.43 4.09 -27.88 -0.11 -0.54 16 19 C -0.50 -14.78 9.66 -34.44 -0.33 -15.12 16 20 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 21 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 22 N -0.91 -28.65 13.96 55.43 0.77 -27.88 16 23 Si 0.88 22.62 27.47 -169.99 -4.67 17.95 16 24 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 27 N -0.52 -6.95 8.11 -8.67 -0.07 -7.02 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 34 H 0.10 1.78 6.82 -51.93 -0.35 1.43 16 35 H 0.08 0.98 7.64 -51.93 -0.40 0.59 16 36 H 0.11 1.28 6.60 -51.93 -0.34 0.93 16 37 H 0.10 1.38 7.04 -51.93 -0.37 1.01 16 38 H 0.11 0.90 7.84 -51.93 -0.41 0.49 16 39 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 40 H 0.13 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.69 7.36 -51.93 -0.38 1.30 16 43 H 0.08 1.68 5.57 -51.93 -0.29 1.39 16 44 H 0.03 0.72 4.40 -51.93 -0.23 0.49 16 45 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 46 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -36.00 365.70 -9.28 -45.28 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.55 Total: 1.79 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.76 Total: -1.91 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.52 Total: -52.45 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.29 Total: -16.17 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.67 Total: 17.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.00 -9.28 -45.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274841757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.153 kcal (2) G-P(sol) polarization free energy of solvation -36.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds