Wall clock time and date at job start Tue Mar 31 2020 16:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38072 * 119.57123 * 2 1 4 4 C 1.38844 * 119.32576 * 179.97438 * 3 2 1 5 5 C 1.38342 * 118.50555 * 0.02562 * 4 3 2 6 6 C 1.39095 * 119.09890 * 359.97438 * 5 4 3 7 7 N 1.39003 * 119.70005 * 179.97438 * 6 5 4 8 8 C 1.47577 * 110.99748 * 83.91146 * 7 6 5 9 9 C 1.52990 * 87.80308 * 138.29594 * 8 7 6 10 10 C 1.47580 * 110.99695 * 180.02562 * 7 6 5 11 11 C 1.52661 * 113.96835 * 220.61255 * 9 8 7 12 12 O 1.43399 * 108.26413 * 272.21314 * 11 9 8 13 13 C 1.42821 * 113.35134 * 294.57618 * 12 11 9 14 14 C 1.50276 * 110.53164 * 51.37649 * 13 12 11 15 15 O 1.21281 * 118.99585 * 161.41848 * 14 13 12 16 16 N 1.34312 * 122.01360 * 341.44054 * 14 13 12 17 17 C 1.46503 * 119.40572 * 182.01582 * 16 14 13 18 18 C 1.52993 * 109.47020 * 269.97838 * 17 16 14 19 19 C 1.50708 * 109.46988 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99330 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00218 * 180.02562 * 19 18 17 22 22 N 1.31505 * 120.00089 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99822 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47001 * 90.00163 * 23 21 19 25 25 H 1.48502 * 109.46980 * 210.00290 * 23 21 19 26 26 H 1.48497 * 109.47218 * 330.00163 * 23 21 19 27 27 N 1.31944 * 119.57486 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47390 * 269.97951 * 1 2 3 29 29 H 1.09000 * 109.47445 * 29.98115 * 1 2 3 30 30 H 1.08995 * 109.47143 * 149.98181 * 1 2 3 31 31 H 1.07995 * 120.33648 * 359.97438 * 3 2 1 32 32 H 1.07994 * 120.74150 * 180.02562 * 4 3 2 33 33 H 1.07998 * 120.44362 * 180.27899 * 5 4 3 34 34 H 1.09002 * 113.49177 * 253.02396 * 8 7 6 35 35 H 1.08995 * 113.50214 * 23.56026 * 8 7 6 36 36 H 1.08997 * 113.49755 * 336.43305 * 10 7 6 37 37 H 1.09000 * 113.49325 * 106.96349 * 10 7 6 38 38 H 1.09000 * 109.70411 * 31.90687 * 11 9 8 39 39 H 1.09001 * 109.70171 * 152.51661 * 11 9 8 40 40 H 1.08998 * 109.26031 * 171.64907 * 13 12 11 41 41 H 1.09000 * 109.26429 * 291.10628 * 13 12 11 42 42 H 1.09005 * 109.46897 * 29.98198 * 17 16 14 43 43 H 1.09002 * 109.46982 * 149.97717 * 17 16 14 44 44 H 1.09000 * 109.47589 * 299.99459 * 18 17 16 45 45 H 1.08997 * 109.47357 * 60.00571 * 18 17 16 46 46 H 0.97005 * 120.00173 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1883 1.2009 0.0000 4 6 3.5767 1.1949 0.0005 5 6 4.2318 -0.0236 0.0005 6 6 3.4815 -1.1949 0.0005 7 7 4.1268 -2.4261 -0.0001 8 6 4.5022 -2.8270 1.3697 9 6 4.0476 -4.2444 1.0163 10 6 3.1519 -3.5340 -0.0006 11 6 3.2825 -4.9472 2.1348 12 8 4.2318 -5.6082 2.9822 13 6 4.9312 -6.6687 2.3296 14 6 5.5194 -6.1918 1.0316 15 8 6.4117 -6.8339 0.5194 16 7 5.0873 -5.0759 0.4215 17 6 5.6709 -4.6875 -0.8650 18 6 6.8822 -3.7847 -0.6237 19 6 7.4829 -3.3857 -1.9470 20 1 7.0441 -3.7403 -2.8680 21 6 8.5924 -2.5680 -1.9820 22 7 9.1162 -2.2194 -3.1368 23 14 9.3508 -1.9541 -0.3890 24 1 10.3828 -2.9175 0.0713 25 1 9.9787 -0.6281 -0.6185 26 1 8.2938 -1.8287 0.6464 27 7 2.1581 -1.1475 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6468 2.1353 -0.0004 32 1 4.1327 2.1207 0.0010 33 1 5.3109 -0.0648 0.0055 34 1 5.5714 -2.7501 1.5673 35 1 3.8948 -2.3558 2.1424 36 1 2.1770 -3.2552 0.3992 37 1 3.0838 -4.0525 -0.9570 38 1 2.7214 -4.2136 2.7136 39 1 2.5982 -5.6803 1.7075 40 1 5.7318 -7.0241 2.9782 41 1 4.2393 -7.4874 2.1316 42 1 5.9850 -5.5803 -1.4058 43 1 4.9278 -4.1491 -1.4532 44 1 6.5681 -2.8919 -0.0830 45 1 7.6253 -4.3231 -0.0355 46 1 9.8971 -1.6444 -3.1614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274841757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:49 Heat of formation + Delta-G solvation = 1.849422 kcal Electronic energy + Delta-G solvation = -29872.373572 eV Core-core repulsion = 25956.456086 eV Total energy + Delta-G solvation = -3915.917486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.07272 -41.29364 -39.89122 -38.57641 -36.46273 -35.01749 -33.93428 -33.28948 -32.22447 -30.77581 -29.03540 -28.45261 -27.31174 -26.74893 -25.71592 -23.53940 -22.75671 -22.65156 -22.05351 -19.59834 -19.17848 -18.57504 -18.27143 -17.56921 -17.50966 -17.00099 -16.69693 -16.40378 -16.34004 -16.15627 -15.62187 -15.35447 -14.99223 -14.92358 -14.77372 -14.65655 -14.45726 -14.08100 -13.97361 -13.60049 -13.28809 -13.22389 -13.06138 -12.96022 -12.83546 -12.78594 -12.46061 -12.37947 -11.98278 -11.96347 -11.69418 -11.45901 -11.41618 -10.97039 -10.78648 -10.70744 -10.46868 -10.31697 -9.77754 -9.28820 -8.32467 -6.33650 0.10422 0.31454 1.25197 1.27800 1.38208 1.39328 1.75072 2.30225 2.49415 2.66903 2.77288 3.03349 3.17239 3.21177 3.36901 3.55168 3.78275 3.90267 4.11737 4.15130 4.17997 4.23107 4.29643 4.36687 4.44411 4.47840 4.49481 4.57179 4.60779 4.69384 4.71396 4.74483 4.82527 4.84707 4.88455 4.93859 5.06589 5.22047 5.25782 5.30247 5.44213 5.46300 5.63845 5.65110 5.78126 6.17993 6.23654 6.41127 6.70042 6.96208 7.00199 7.28742 8.84756 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.008418 B = 0.005973 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.492548 B = 4686.275691 C = 7200.018701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.133 3.867 3 C -0.186 4.186 4 C -0.059 4.059 5 C -0.193 4.193 6 C 0.265 3.735 7 N -0.441 5.441 8 C 0.014 3.986 9 C 0.106 3.894 10 C 0.021 3.979 11 C 0.073 3.927 12 O -0.370 6.370 13 C 0.062 3.938 14 C 0.472 3.528 15 O -0.584 6.584 16 N -0.576 5.576 17 C 0.145 3.855 18 C 0.000 4.000 19 C -0.516 4.516 20 H 0.031 0.969 21 C 0.012 3.988 22 N -0.949 5.949 23 Si 0.944 3.056 24 H -0.277 1.277 25 H -0.276 1.276 26 H -0.252 1.252 27 N -0.523 5.523 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.168 0.832 32 H 0.157 0.843 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.082 0.918 38 H 0.147 0.853 39 H 0.098 0.902 40 H 0.141 0.859 41 H 0.122 0.878 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.039 0.961 45 H -0.014 1.014 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.077 3.979 15.843 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.006 4.006 3 C -0.206 4.206 4 C -0.084 4.084 5 C -0.215 4.215 6 C 0.035 3.965 7 N -0.160 5.160 8 C -0.114 4.114 9 C 0.018 3.982 10 C -0.108 4.108 11 C -0.004 4.004 12 O -0.288 6.288 13 C -0.018 4.018 14 C 0.262 3.738 15 O -0.465 6.465 16 N -0.307 5.307 17 C 0.023 3.977 18 C -0.039 4.039 19 C -0.555 4.555 20 H 0.049 0.951 21 C -0.184 4.184 22 N -0.590 5.590 23 Si 0.768 3.232 24 H -0.203 1.203 25 H -0.201 1.201 26 H -0.175 1.175 27 N -0.238 5.238 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.185 0.815 32 H 0.175 0.825 33 H 0.133 0.867 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.153 0.847 37 H 0.100 0.900 38 H 0.165 0.835 39 H 0.116 0.884 40 H 0.158 0.842 41 H 0.140 0.860 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.057 0.943 45 H 0.004 0.996 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.401 3.071 15.163 27.225 hybrid contribution 1.512 1.117 -0.294 1.902 sum -20.890 4.188 14.869 25.981 Atomic orbital electron populations 1.20788 0.86104 1.04316 1.04232 1.21766 0.98403 0.87688 0.92751 1.22228 0.94282 1.00337 1.03737 1.21810 0.95328 0.97807 0.93495 1.21720 1.01072 0.93159 1.05569 1.20433 0.88722 0.92354 0.94944 1.66805 1.26244 0.99727 1.23255 1.24329 1.02890 0.94547 0.89617 1.22091 0.89311 0.90810 0.95973 1.24081 0.96988 0.89624 1.00101 1.23134 0.89820 0.97811 0.89653 1.88160 1.54928 1.48779 1.36934 1.22824 0.98703 0.91027 0.89200 1.22145 0.82723 0.80284 0.88666 1.90745 1.31745 1.56677 1.67290 1.47496 1.37768 1.23597 1.21808 1.21174 0.95705 0.97299 0.83548 1.19638 0.93384 0.95523 0.95319 1.21226 1.12315 1.29236 0.92694 0.95064 1.25805 0.97072 0.96078 0.99466 1.70048 1.23997 1.38024 1.26912 0.85762 0.79044 0.77886 0.80517 1.20273 1.20091 1.17532 1.67371 1.08002 1.31260 1.17139 0.88778 0.88653 0.90911 0.81496 0.82531 0.86690 0.91023 0.87309 0.84737 0.89994 0.83541 0.88436 0.84162 0.86014 0.93673 0.89841 0.94327 0.99585 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.17 71.23 0.72 -0.38 16 2 C 0.13 2.61 6.78 42.50 0.29 2.90 16 3 C -0.19 -3.33 9.73 22.38 0.22 -3.11 16 4 C -0.06 -1.30 10.17 22.44 0.23 -1.07 16 5 C -0.19 -5.81 10.00 22.50 0.22 -5.59 16 6 C 0.26 7.97 5.85 133.05 0.78 8.75 16 7 N -0.44 -14.28 4.35 -731.26 -3.18 -17.46 16 8 C 0.01 0.39 6.20 83.72 0.52 0.91 16 9 C 0.11 2.70 1.67 3.82 0.01 2.71 16 10 C 0.02 0.53 5.98 83.73 0.50 1.03 16 11 C 0.07 1.18 6.14 71.87 0.44 1.63 16 12 O -0.37 -7.48 10.84 -148.98 -1.62 -9.09 16 13 C 0.06 1.34 6.93 71.10 0.49 1.84 16 14 C 0.47 16.29 7.64 87.60 0.67 16.96 16 15 O -0.58 -26.13 16.49 -3.03 -0.05 -26.18 16 16 N -0.58 -20.09 2.69 -779.78 -2.10 -22.19 16 17 C 0.14 6.48 4.49 86.38 0.39 6.87 16 18 C 0.00 -0.02 4.09 29.85 0.12 0.10 16 19 C -0.52 -32.10 9.66 25.60 0.25 -31.85 16 20 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 21 C 0.01 0.78 5.47 84.66 0.46 1.24 16 22 N -0.95 -62.35 13.96 21.45 0.30 -62.05 16 23 Si 0.94 48.01 27.47 68.60 1.88 49.89 16 24 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 25 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.25 -12.01 6.54 99.48 0.65 -11.36 16 27 N -0.52 -13.15 8.11 -181.34 -1.47 -14.63 16 28 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.09 0.70 8.08 -2.39 -0.02 0.68 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.11 3.94 8.06 -2.91 -0.02 3.92 16 34 H 0.07 2.47 6.82 -2.39 -0.02 2.46 16 35 H 0.11 2.40 7.64 -2.39 -0.02 2.38 16 36 H 0.14 2.76 6.60 -2.39 -0.02 2.74 16 37 H 0.08 2.33 7.04 -2.39 -0.02 2.31 16 38 H 0.15 1.52 7.84 -2.39 -0.02 1.50 16 39 H 0.10 1.14 8.13 -2.39 -0.02 1.12 16 40 H 0.14 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.04 2.24 7.36 -2.38 -0.02 2.22 16 43 H 0.08 3.67 5.57 -2.39 -0.01 3.65 16 44 H 0.04 1.96 4.40 -2.39 -0.01 1.95 16 45 H -0.01 -0.80 7.57 -2.39 -0.02 -0.82 16 46 H 0.27 16.25 8.31 -92.70 -0.77 15.48 16 Total: -1.00 -84.77 365.70 1.02 -83.75 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.94 Total: 15.03 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 6.31 Total: 2.92 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -6.45 Total: -116.33 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.67 Total: -35.27 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.88 Total: 49.89 kcal Total: -84.77 1.02 -83.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274841757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.604 kcal (2) G-P(sol) polarization free energy of solvation -84.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds