Wall clock time and date at job start Tue Mar 31 2020 16:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38069 * 119.57671 * 2 1 4 4 C 1.38835 * 119.33185 * 180.02562 * 3 2 1 5 5 C 1.38345 * 118.50304 * 0.02562 * 4 3 2 6 6 C 1.39094 * 119.09936 * 0.02562 * 5 4 3 7 7 N 1.39003 * 119.70175 * 180.02562 * 6 5 4 8 8 C 1.47593 * 111.00091 * 276.10459 * 7 6 5 9 9 C 1.52877 * 87.78830 * 221.76247 * 8 7 6 10 10 C 1.47592 * 110.99669 * 179.97438 * 7 6 5 11 11 C 1.52455 * 114.29778 * 139.67684 * 9 8 7 12 12 N 1.46291 * 109.56274 * 177.68151 * 11 9 8 13 13 C 1.46502 * 118.72789 * 164.06014 * 12 11 9 14 14 C 1.53002 * 109.46808 * 269.99637 * 13 12 11 15 15 C 1.50702 * 109.47040 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99800 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99792 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00045 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99993 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46835 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47067 * 119.99787 * 19 17 15 22 22 H 1.48500 * 109.47352 * 240.00273 * 19 17 15 23 23 C 1.33715 * 122.54730 * 344.05317 * 12 11 9 24 24 O 1.21284 * 118.36223 * 183.33228 * 23 12 11 25 25 C 1.50158 * 123.27803 * 3.30203 * 23 12 11 26 26 O 1.42569 * 114.28370 * 271.61624 * 9 8 7 27 27 N 1.31937 * 119.57105 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46771 * 269.97756 * 1 2 3 29 29 H 1.09000 * 109.47224 * 29.97402 * 1 2 3 30 30 H 1.08994 * 109.47489 * 149.97489 * 1 2 3 31 31 H 1.08000 * 120.33060 * 0.02600 * 3 2 1 32 32 H 1.08003 * 120.74729 * 180.29655 * 4 3 2 33 33 H 1.07999 * 120.44581 * 179.97438 * 5 4 3 34 34 H 1.09002 * 113.49905 * 336.48894 * 8 7 6 35 35 H 1.08991 * 113.50119 * 107.03012 * 8 7 6 36 36 H 1.09008 * 113.49876 * 252.96588 * 10 7 6 37 37 H 1.09002 * 113.50355 * 23.44390 * 10 7 6 38 38 H 1.09003 * 109.45405 * 297.70375 * 11 9 8 39 39 H 1.08996 * 109.46023 * 57.64747 * 11 9 8 40 40 H 1.08999 * 109.47357 * 29.99297 * 13 12 11 41 41 H 1.09001 * 109.47493 * 149.99522 * 13 12 11 42 42 H 1.09002 * 109.46507 * 299.99589 * 14 13 12 43 43 H 1.08998 * 109.47632 * 59.99943 * 14 13 12 44 44 H 0.96998 * 119.99350 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.35239 * 222.05841 * 25 23 12 46 46 H 1.09002 * 109.22721 * 102.43050 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2008 0.0000 4 6 3.5768 1.1948 -0.0005 5 6 4.2318 -0.0237 -0.0016 6 6 3.4815 -1.1950 -0.0026 7 7 4.1267 -2.4262 -0.0032 8 6 4.5025 -2.8258 -1.3734 9 6 4.0466 -4.2420 -1.0218 10 6 3.1517 -3.5342 -0.0036 11 6 3.2874 -4.9517 -2.1373 12 7 2.9504 -6.3105 -1.7130 13 6 1.9315 -7.0499 -2.4622 14 6 0.5545 -6.7817 -1.8513 15 6 -0.4936 -7.5427 -2.6216 16 1 -0.2064 -8.1560 -3.4629 17 6 -1.8192 -7.4560 -2.2522 18 7 -2.1688 -6.7096 -1.2274 19 14 -3.1185 -8.3988 -3.2074 20 1 -2.4707 -9.1587 -4.3066 21 1 -3.8145 -9.3430 -2.2968 22 1 -4.1031 -7.4446 -3.7779 23 6 3.5365 -6.9040 -0.6678 24 8 3.2438 -8.0545 -0.4199 25 6 4.5395 -6.2172 0.2138 26 8 5.0618 -5.0578 -0.4416 27 7 2.1581 -1.1475 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6470 2.1352 0.0004 32 1 4.1329 2.1207 0.0043 33 1 5.3110 -0.0650 -0.0025 34 1 3.8959 -2.3531 -2.1458 35 1 5.5718 -2.7498 -1.5704 36 1 3.0844 -4.0544 0.9520 37 1 2.1760 -3.2545 -0.4012 38 1 2.3719 -4.4032 -2.3593 39 1 3.9105 -4.9942 -3.0306 40 1 1.9372 -6.7239 -3.5023 41 1 2.1484 -8.1170 -2.4147 42 1 0.5488 -7.1077 -0.8113 43 1 0.3375 -5.7146 -1.8988 44 1 -3.1013 -6.6490 -0.9674 45 1 5.3556 -6.9047 0.4360 46 1 4.0553 -5.9189 1.1437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274841805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:39 Heat of formation + Delta-G solvation = 18.454568 kcal Electronic energy + Delta-G solvation = -28878.553034 eV Core-core repulsion = 24963.355601 eV Total energy + Delta-G solvation = -3915.197432 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92549 -40.29261 -38.98950 -36.70626 -35.43669 -33.25905 -33.05623 -32.48063 -30.32766 -29.44947 -27.97539 -27.20000 -26.20573 -25.50046 -24.52315 -22.61167 -22.07536 -21.38589 -20.14837 -18.52203 -17.45525 -17.32000 -16.68507 -16.64219 -16.13790 -15.95589 -15.69710 -15.58340 -14.85120 -14.58422 -14.37848 -14.12351 -13.94502 -13.84462 -13.51410 -13.27327 -12.99648 -12.76463 -12.59173 -12.52202 -12.26029 -12.24630 -12.10122 -11.92052 -11.52598 -11.34290 -10.97325 -10.84331 -10.68993 -10.24850 -10.14175 -9.94555 -9.90867 -9.85004 -9.55097 -9.29915 -8.97975 -8.58656 -8.36603 -8.10691 -6.01539 -4.04504 0.84365 1.05504 2.88408 3.17295 3.30462 3.31009 3.34764 3.38805 3.43184 3.64255 4.04892 4.21702 4.34080 4.45899 4.53341 4.65803 4.82700 4.86078 4.91265 5.03757 5.15696 5.22640 5.28737 5.34768 5.37146 5.41275 5.44370 5.48690 5.51659 5.55454 5.60020 5.73160 5.79789 5.92292 5.92715 6.01975 6.08134 6.34438 6.52860 6.69263 6.84369 6.88765 6.94164 7.58075 7.69975 7.78915 7.91896 7.98169 8.34424 8.52077 9.01930 9.59408 11.09846 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010314 B = 0.003753 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.070296 B = 7459.093159 C = 9666.684615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.152 3.848 3 C -0.190 4.190 4 C -0.061 4.061 5 C -0.170 4.170 6 C 0.275 3.725 7 N -0.419 5.419 8 C 0.038 3.962 9 C 0.069 3.931 10 C -0.008 4.008 11 C 0.106 3.894 12 N -0.596 5.596 13 C 0.111 3.889 14 C 0.015 3.985 15 C -0.520 4.520 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.893 3.107 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.481 3.519 24 O -0.540 6.540 25 C 0.051 3.949 26 O -0.337 6.337 27 N -0.508 5.508 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.021 0.979 43 H 0.015 0.985 44 H 0.260 0.740 45 H 0.130 0.870 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.688 18.153 1.077 22.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.013 3.987 3 C -0.211 4.211 4 C -0.087 4.087 5 C -0.192 4.192 6 C 0.044 3.956 7 N -0.138 5.138 8 C -0.089 4.089 9 C 0.028 3.972 10 C -0.136 4.136 11 C -0.019 4.019 12 N -0.328 5.328 13 C -0.009 4.009 14 C -0.022 4.022 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C 0.268 3.732 24 O -0.418 6.418 25 C -0.028 4.028 26 O -0.255 6.255 27 N -0.221 5.221 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.136 0.864 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.039 0.961 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.147 0.853 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.639 16.937 1.826 21.823 hybrid contribution -1.155 0.441 -0.765 1.454 sum 12.484 17.378 1.061 21.424 Atomic orbital electron populations 1.20786 0.88491 1.03930 1.03424 1.21169 0.96982 0.87677 0.92836 1.21898 0.94932 0.99196 1.05051 1.21487 0.94348 0.98009 0.94833 1.21567 1.01318 0.91553 1.04733 1.20471 0.88255 0.92545 0.94315 1.66691 1.26080 0.99045 1.21980 1.23753 1.04130 0.91037 0.89951 1.22419 0.89960 0.90776 0.94072 1.24424 0.97224 0.90404 1.01521 1.21827 0.99996 0.83590 0.96447 1.47662 1.39972 1.14654 1.30529 1.21965 0.88438 0.96554 0.93940 1.19352 0.88938 0.96995 0.96961 1.21118 0.91663 1.28438 1.14647 0.92468 1.24990 0.98683 0.95425 0.95128 1.69986 1.17227 1.39376 1.26524 0.86517 0.81603 0.79787 0.79980 1.19665 1.20961 1.21025 1.20646 0.82949 0.87583 0.82035 1.90751 1.63767 1.17249 1.70048 1.22814 0.97868 0.86958 0.95143 1.88033 1.29651 1.35054 1.72739 1.67466 1.08917 1.30282 1.15469 0.90170 0.90603 0.89844 0.84804 0.84622 0.84478 0.88907 0.87427 0.88834 0.86422 0.88972 0.90611 0.91758 0.90385 0.96079 0.96651 0.93040 0.85269 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.17 36.00 0.37 -0.67 16 2 C 0.15 1.72 6.78 -82.61 -0.56 1.16 16 3 C -0.19 -1.70 9.73 -39.42 -0.38 -2.08 16 4 C -0.06 -0.51 10.17 -39.32 -0.40 -0.90 16 5 C -0.17 -1.69 10.00 -39.22 -0.39 -2.08 16 6 C 0.27 3.41 5.85 -155.01 -0.91 2.51 16 7 N -0.42 -5.26 6.41 -182.58 -1.17 -6.43 16 8 C 0.04 0.41 7.09 -7.23 -0.05 0.35 16 9 C 0.07 0.89 1.22 -91.00 -0.11 0.78 16 10 C -0.01 -0.11 6.57 -7.20 -0.05 -0.15 16 11 C 0.11 1.49 5.90 -4.43 -0.03 1.47 16 12 N -0.60 -10.86 2.84 -174.72 -0.50 -11.35 16 13 C 0.11 2.38 5.26 -4.04 -0.02 2.36 16 14 C 0.02 0.40 5.29 -27.88 -0.15 0.26 16 15 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 19 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.48 9.02 7.58 -11.72 -0.09 8.93 16 24 O -0.54 -12.35 16.28 5.55 0.09 -12.26 16 25 C 0.05 0.73 6.69 35.74 0.24 0.97 16 26 O -0.34 -4.60 10.68 -35.23 -0.38 -4.98 16 27 N -0.51 -6.87 8.11 -8.67 -0.07 -6.94 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 35 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.39 7.10 -51.92 -0.37 1.02 16 37 H 0.12 1.82 6.42 -51.93 -0.33 1.49 16 38 H 0.09 1.32 7.86 -51.93 -0.41 0.91 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.25 8.04 -51.93 -0.42 0.83 16 41 H 0.08 1.80 7.19 -51.93 -0.37 1.43 16 42 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 45 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 46 H 0.09 1.18 7.24 -51.93 -0.38 0.81 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -34.95 378.30 -10.42 -45.37 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.87 Total: 0.94 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.94 Total: -0.61 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -1.00 Total: -50.92 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.29 Total: -17.23 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.95 -10.42 -45.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274841805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.825 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds