Wall clock time and date at job start Tue Mar 31 2020 16:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38069 * 119.57671 * 2 1 4 4 C 1.38835 * 119.33185 * 180.02562 * 3 2 1 5 5 C 1.38345 * 118.50304 * 0.02562 * 4 3 2 6 6 C 1.39094 * 119.09936 * 0.02562 * 5 4 3 7 7 N 1.39003 * 119.70175 * 180.02562 * 6 5 4 8 8 C 1.47593 * 111.00091 * 276.10459 * 7 6 5 9 9 C 1.52877 * 87.78830 * 221.76247 * 8 7 6 10 10 C 1.47592 * 110.99669 * 179.97438 * 7 6 5 11 11 C 1.52455 * 114.29778 * 139.67684 * 9 8 7 12 12 N 1.46291 * 109.56274 * 177.68151 * 11 9 8 13 13 C 1.46502 * 118.72789 * 164.06014 * 12 11 9 14 14 C 1.53002 * 109.46808 * 269.99637 * 13 12 11 15 15 C 1.50702 * 109.47040 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99800 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99792 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00045 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99993 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46835 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47067 * 119.99787 * 19 17 15 22 22 H 1.48500 * 109.47352 * 240.00273 * 19 17 15 23 23 C 1.33715 * 122.54730 * 344.05317 * 12 11 9 24 24 O 1.21284 * 118.36223 * 183.33228 * 23 12 11 25 25 C 1.50158 * 123.27803 * 3.30203 * 23 12 11 26 26 O 1.42569 * 114.28370 * 271.61624 * 9 8 7 27 27 N 1.31937 * 119.57105 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46771 * 269.97756 * 1 2 3 29 29 H 1.09000 * 109.47224 * 29.97402 * 1 2 3 30 30 H 1.08994 * 109.47489 * 149.97489 * 1 2 3 31 31 H 1.08000 * 120.33060 * 0.02600 * 3 2 1 32 32 H 1.08003 * 120.74729 * 180.29655 * 4 3 2 33 33 H 1.07999 * 120.44581 * 179.97438 * 5 4 3 34 34 H 1.09002 * 113.49905 * 336.48894 * 8 7 6 35 35 H 1.08991 * 113.50119 * 107.03012 * 8 7 6 36 36 H 1.09008 * 113.49876 * 252.96588 * 10 7 6 37 37 H 1.09002 * 113.50355 * 23.44390 * 10 7 6 38 38 H 1.09003 * 109.45405 * 297.70375 * 11 9 8 39 39 H 1.08996 * 109.46023 * 57.64747 * 11 9 8 40 40 H 1.08999 * 109.47357 * 29.99297 * 13 12 11 41 41 H 1.09001 * 109.47493 * 149.99522 * 13 12 11 42 42 H 1.09002 * 109.46507 * 299.99589 * 14 13 12 43 43 H 1.08998 * 109.47632 * 59.99943 * 14 13 12 44 44 H 0.96998 * 119.99350 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.35239 * 222.05841 * 25 23 12 46 46 H 1.09002 * 109.22721 * 102.43050 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2008 0.0000 4 6 3.5768 1.1948 -0.0005 5 6 4.2318 -0.0237 -0.0016 6 6 3.4815 -1.1950 -0.0026 7 7 4.1267 -2.4262 -0.0032 8 6 4.5025 -2.8258 -1.3734 9 6 4.0466 -4.2420 -1.0218 10 6 3.1517 -3.5342 -0.0036 11 6 3.2874 -4.9517 -2.1373 12 7 2.9504 -6.3105 -1.7130 13 6 1.9315 -7.0499 -2.4622 14 6 0.5545 -6.7817 -1.8513 15 6 -0.4936 -7.5427 -2.6216 16 1 -0.2064 -8.1560 -3.4629 17 6 -1.8192 -7.4560 -2.2522 18 7 -2.1688 -6.7096 -1.2274 19 14 -3.1185 -8.3988 -3.2074 20 1 -2.4707 -9.1587 -4.3066 21 1 -3.8145 -9.3430 -2.2968 22 1 -4.1031 -7.4446 -3.7779 23 6 3.5365 -6.9040 -0.6678 24 8 3.2438 -8.0545 -0.4199 25 6 4.5395 -6.2172 0.2138 26 8 5.0618 -5.0578 -0.4416 27 7 2.1581 -1.1475 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6470 2.1352 0.0004 32 1 4.1329 2.1207 0.0043 33 1 5.3110 -0.0650 -0.0025 34 1 3.8959 -2.3531 -2.1458 35 1 5.5718 -2.7498 -1.5704 36 1 3.0844 -4.0544 0.9520 37 1 2.1760 -3.2545 -0.4012 38 1 2.3719 -4.4032 -2.3593 39 1 3.9105 -4.9942 -3.0306 40 1 1.9372 -6.7239 -3.5023 41 1 2.1484 -8.1170 -2.4147 42 1 0.5488 -7.1077 -0.8113 43 1 0.3375 -5.7146 -1.8988 44 1 -3.1013 -6.6490 -0.9674 45 1 5.3556 -6.9047 0.4360 46 1 4.0553 -5.9189 1.1437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274841805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:38 Heat of formation + Delta-G solvation = -6.277719 kcal Electronic energy + Delta-G solvation = -28879.625506 eV Core-core repulsion = 24963.355601 eV Total energy + Delta-G solvation = -3916.269905 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.94037 -41.41164 -40.15726 -37.85665 -37.05118 -35.14942 -33.99801 -33.37203 -32.12371 -30.63084 -29.08434 -28.43568 -27.18276 -26.63998 -26.28676 -23.75697 -23.14343 -22.70461 -21.47251 -19.80250 -18.72084 -18.69231 -18.29380 -17.52185 -17.38629 -17.05398 -16.91762 -16.71061 -16.50537 -15.83880 -15.67646 -15.34500 -14.96635 -14.84707 -14.75784 -14.54943 -14.28500 -14.20425 -13.99849 -13.74344 -13.41997 -13.23906 -13.17381 -13.03153 -12.88931 -12.83699 -12.63652 -12.56620 -12.06069 -11.92685 -11.83986 -11.44625 -11.26875 -11.06199 -10.74349 -10.61351 -10.48932 -10.36619 -9.72233 -9.40485 -8.24257 -6.36853 0.07656 0.33317 1.37458 1.39345 1.42434 1.52796 1.81935 2.19949 2.39460 2.49732 2.78783 3.07939 3.09482 3.17097 3.26906 3.56797 3.77881 3.88392 4.08889 4.10439 4.16894 4.20041 4.27048 4.33756 4.35297 4.40103 4.46427 4.52261 4.54113 4.63994 4.67402 4.71398 4.72734 4.76100 4.79300 4.88576 5.10292 5.16556 5.19847 5.27871 5.41666 5.53014 5.58047 5.69644 5.78972 6.06969 6.14184 6.37714 6.77949 6.99922 7.01224 7.32831 8.88040 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010314 B = 0.003753 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.070296 B = 7459.093159 C = 9666.684615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.124 3.876 3 C -0.182 4.182 4 C -0.055 4.055 5 C -0.169 4.169 6 C 0.247 3.753 7 N -0.421 5.421 8 C 0.053 3.947 9 C 0.071 3.929 10 C -0.009 4.009 11 C 0.102 3.898 12 N -0.598 5.598 13 C 0.127 3.873 14 C 0.029 3.971 15 C -0.543 4.543 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.969 3.031 20 H -0.259 1.259 21 H -0.282 1.282 22 H -0.273 1.273 23 C 0.472 3.528 24 O -0.590 6.590 25 C 0.063 3.937 26 O -0.329 6.329 27 N -0.546 5.546 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.165 0.835 32 H 0.174 0.826 33 H 0.156 0.844 34 H 0.102 0.898 35 H 0.132 0.868 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.059 0.941 42 H -0.027 1.027 43 H -0.002 1.002 44 H 0.264 0.736 45 H 0.156 0.844 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.154 20.375 -0.318 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.014 4.014 3 C -0.202 4.202 4 C -0.080 4.080 5 C -0.191 4.191 6 C 0.017 3.983 7 N -0.140 5.140 8 C -0.074 4.074 9 C 0.030 3.970 10 C -0.138 4.138 11 C -0.021 4.021 12 N -0.329 5.329 13 C 0.005 3.995 14 C -0.009 4.009 15 C -0.582 4.582 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.793 3.207 20 H -0.183 1.183 21 H -0.208 1.208 22 H -0.198 1.198 23 C 0.261 3.739 24 O -0.472 6.472 25 C -0.016 4.016 26 O -0.247 6.247 27 N -0.261 5.261 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.182 0.818 32 H 0.192 0.808 33 H 0.173 0.827 34 H 0.120 0.880 35 H 0.150 0.850 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.077 0.923 42 H -0.008 1.008 43 H 0.017 0.983 44 H 0.073 0.927 45 H 0.174 0.826 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.135 19.206 0.416 24.456 hybrid contribution -1.640 -0.143 -0.278 1.670 sum 13.495 19.063 0.138 23.356 Atomic orbital electron populations 1.20800 0.88140 1.03886 1.03509 1.21517 0.97610 0.88260 0.93996 1.22244 0.95567 0.99290 1.03091 1.21947 0.94246 0.98846 0.92998 1.21832 1.02183 0.91212 1.03834 1.20660 0.88323 0.93111 0.96170 1.66722 1.25239 0.98841 1.23157 1.23791 1.05647 0.88464 0.89501 1.22452 0.89733 0.91618 0.93215 1.24241 0.97068 0.91717 1.00807 1.22099 1.00549 0.81213 0.98189 1.47712 1.38870 1.16062 1.30252 1.21531 0.86720 0.96144 0.95147 1.19130 0.91924 0.95419 0.94400 1.21558 0.92623 1.28842 1.15145 0.91644 1.25996 1.01280 0.96282 0.96064 1.70129 1.17992 1.40819 1.28194 0.85342 0.78372 0.78369 0.78620 1.18279 1.20762 1.19818 1.21545 0.83219 0.87215 0.81927 1.90718 1.65642 1.19577 1.71256 1.22794 0.97496 0.87313 0.93959 1.88050 1.29477 1.34545 1.72631 1.67389 1.09958 1.31950 1.16771 0.90045 0.87854 0.92596 0.81789 0.80827 0.82650 0.87956 0.84958 0.90624 0.88616 0.89598 0.87421 0.89149 0.92254 1.00838 0.98333 0.92745 0.82638 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 10.17 71.24 0.72 -1.34 16 2 C 0.12 2.77 6.78 42.50 0.29 3.06 16 3 C -0.18 -2.78 9.73 22.37 0.22 -2.57 16 4 C -0.05 -0.72 10.17 22.44 0.23 -0.50 16 5 C -0.17 -2.96 10.00 22.50 0.22 -2.73 16 6 C 0.25 5.99 5.85 133.04 0.78 6.77 16 7 N -0.42 -10.29 6.41 -732.34 -4.70 -14.98 16 8 C 0.05 1.02 7.09 83.72 0.59 1.61 16 9 C 0.07 1.79 1.22 -11.04 -0.01 1.78 16 10 C -0.01 -0.27 6.57 83.74 0.55 0.28 16 11 C 0.10 2.85 5.90 86.24 0.51 3.35 16 12 N -0.60 -22.29 2.84 -825.68 -2.34 -24.63 16 13 C 0.13 5.58 5.26 86.38 0.45 6.04 16 14 C 0.03 1.62 5.29 29.85 0.16 1.78 16 15 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 16 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 17 C 0.00 0.11 5.46 84.65 0.46 0.57 16 18 N -0.93 -58.16 13.29 21.45 0.28 -57.87 16 19 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 20 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 C 0.47 18.19 7.58 87.65 0.66 18.86 16 24 O -0.59 -28.24 16.28 -3.04 -0.05 -28.29 16 25 C 0.06 1.77 6.69 71.07 0.48 2.25 16 26 O -0.33 -8.51 10.68 -148.98 -1.59 -10.10 16 27 N -0.55 -15.16 8.11 -181.34 -1.47 -16.64 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.10 1.35 8.08 -2.39 -0.02 1.33 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 33 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 34 H 0.10 1.80 7.85 -2.39 -0.02 1.78 16 35 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 2.40 7.10 -2.38 -0.02 2.39 16 37 H 0.10 3.22 6.42 -2.39 -0.02 3.20 16 38 H 0.09 2.52 7.86 -2.39 -0.02 2.50 16 39 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.09 3.49 8.04 -2.39 -0.02 3.47 16 41 H 0.06 2.84 7.19 -2.39 -0.02 2.83 16 42 H -0.03 -1.72 8.14 -2.39 -0.02 -1.74 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 45 H 0.16 3.56 8.14 -2.39 -0.02 3.54 16 46 H 0.10 2.58 7.24 -2.39 -0.02 2.57 16 Total: -1.00 -80.38 378.30 -0.31 -80.69 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.98 Total: 17.04 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 6.55 Total: 7.68 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -8.22 Total: -114.13 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.64 Total: -38.39 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -80.38 -0.31 -80.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274841805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.411 kcal (2) G-P(sol) polarization free energy of solvation -80.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds