Wall clock time and date at job start Tue Mar 31 2020 17:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 110.77969 * 2 1 4 4 N 1.46500 * 109.46757 * 298.21049 * 3 2 1 5 5 C 1.36943 * 119.99608 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99792 * 0.02562 * 5 4 3 7 7 C 1.38810 * 120.00197 * 180.02562 * 5 4 3 8 8 N 1.31624 * 119.99589 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00315 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47173 * 89.99977 * 9 7 5 11 11 H 1.48499 * 109.47369 * 209.99960 * 9 7 5 12 12 H 1.48502 * 109.47004 * 330.00165 * 9 7 5 13 13 C 1.55156 * 110.71561 * 123.23670 * 2 1 3 14 14 C 1.54907 * 101.58091 * 82.86170 * 13 2 1 15 15 N 1.47430 * 104.83539 * 37.01054 * 14 13 2 16 16 C 1.34768 * 125.65328 * 156.13823 * 15 14 13 17 17 O 1.21356 * 120.00431 * 179.68804 * 16 15 14 18 18 C 1.49360 * 119.99994 * 359.68603 * 16 15 14 19 19 O 1.21378 * 119.99601 * 0.02562 * 18 16 15 20 20 N 1.34773 * 120.00343 * 179.97438 * 18 16 15 21 21 C 1.39721 * 120.00336 * 175.38376 * 20 18 16 22 22 C 1.38930 * 120.07474 * 214.82534 * 21 20 18 23 23 C 1.38096 * 119.92267 * 179.76815 * 22 21 20 24 24 C 1.38298 * 120.07560 * 0.52730 * 23 22 21 25 25 C 1.38296 * 120.15000 * 359.69855 * 24 23 22 26 26 C 1.38096 * 120.07442 * 0.04917 * 25 24 23 27 27 C 1.47022 * 108.69679 * 335.86940 * 15 14 13 28 28 H 1.08997 * 109.47063 * 181.78442 * 1 2 3 29 29 H 1.08999 * 109.46840 * 301.79177 * 1 2 3 30 30 H 1.09006 * 109.46377 * 61.78586 * 1 2 3 31 31 H 1.08992 * 109.46977 * 58.21343 * 3 2 1 32 32 H 1.09002 * 109.46414 * 178.21602 * 3 2 1 33 33 H 0.96991 * 120.00647 * 0.02562 * 4 3 2 34 34 H 0.96995 * 119.99708 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.99990 * 200.93205 * 13 2 1 36 36 H 1.08992 * 111.01062 * 324.74755 * 13 2 1 37 37 H 1.08992 * 110.37111 * 278.16801 * 14 13 2 38 38 H 1.09011 * 110.36648 * 155.84455 * 14 13 2 39 39 H 0.97005 * 119.99913 * 355.38166 * 20 18 16 40 40 H 1.07997 * 120.03981 * 359.97438 * 22 21 20 41 41 H 1.07997 * 119.96565 * 180.24834 * 23 22 21 42 42 H 1.08000 * 119.92589 * 179.72508 * 24 23 22 43 43 H 1.08001 * 119.96112 * 180.02562 * 25 24 23 44 44 H 1.08010 * 120.03438 * 179.97438 * 26 25 24 45 45 H 1.09002 * 109.88125 * 120.47948 * 27 15 14 46 46 H 1.09006 * 109.88256 * 241.64348 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 7 1.6356 2.1186 -1.2172 5 6 2.0031 3.4192 -1.4379 6 1 2.6157 3.9374 -0.7149 7 6 1.5885 4.0715 -2.5909 8 7 0.8416 3.4401 -3.4718 9 14 2.0892 5.8458 -2.8917 10 1 3.3750 5.8783 -3.6338 11 1 1.0394 6.5278 -3.6905 12 1 2.2512 6.5419 -1.5900 13 6 2.0789 -0.7954 1.2138 14 6 2.0125 -2.2509 0.6876 15 7 2.3716 -2.1532 -0.7390 16 6 2.8809 -3.1491 -1.4907 17 8 3.1351 -2.9564 -2.6616 18 6 3.1325 -4.4899 -0.8828 19 8 2.8779 -4.6828 0.2882 20 7 3.6413 -5.4860 -1.6347 21 6 3.9670 -6.7101 -1.0450 22 6 5.0615 -7.4337 -1.5018 23 6 5.3833 -8.6409 -0.9135 24 6 4.6111 -9.1350 0.1219 25 6 3.5182 -8.4196 0.5760 26 6 3.1937 -7.2092 -0.0043 27 6 2.0761 -0.7913 -1.2072 28 1 -0.3633 -1.0271 0.0320 29 1 -0.3633 0.5414 0.8735 30 1 -0.3632 0.4859 -0.9057 31 1 1.6957 1.9622 0.8735 32 1 3.1622 1.4057 0.0320 33 1 1.0859 1.6531 -1.8667 34 1 0.5515 3.8960 -4.2773 35 1 3.1061 -0.5073 1.4375 36 1 1.4400 -0.6657 2.0873 37 1 1.0039 -2.6488 0.7985 38 1 2.7293 -2.8788 1.2171 39 1 3.7815 -5.3531 -2.5853 40 1 5.6619 -7.0510 -2.3138 41 1 6.2363 -9.2020 -1.2654 42 1 4.8624 -10.0815 0.5773 43 1 2.9175 -8.8081 1.3851 44 1 2.3398 -6.6511 0.3505 45 1 2.9869 -0.3208 -1.5775 46 1 1.3263 -0.8256 -1.9977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278519572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:07 Heat of formation + Delta-G solvation = -16.727710 kcal Electronic energy + Delta-G solvation = -27893.469313 eV Core-core repulsion = 23976.746262 eV Total energy + Delta-G solvation = -3916.723050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31509 -39.94310 -38.65983 -37.91734 -35.44674 -34.65245 -32.72976 -31.24873 -30.55352 -30.08470 -29.12074 -27.16565 -26.02405 -24.58033 -23.45182 -23.10069 -22.06470 -21.73130 -20.09475 -18.89629 -18.30225 -17.51293 -17.18743 -16.77440 -16.51718 -16.19709 -15.60002 -15.07464 -14.76394 -14.67517 -14.33934 -14.05071 -14.00527 -13.72675 -13.57665 -13.22096 -13.15604 -12.99595 -12.77475 -12.34502 -12.17387 -11.97356 -11.84526 -11.64481 -11.63090 -11.40837 -11.02523 -10.84022 -10.73485 -10.55913 -10.43587 -10.32273 -9.96814 -9.66454 -9.59904 -9.24689 -8.88341 -8.73175 -8.52633 -6.92952 -5.76503 -3.05419 0.75142 1.07274 1.41745 2.07341 3.01859 3.28918 3.44203 3.49240 3.49778 3.50850 4.08192 4.54906 4.57366 4.62607 4.66062 4.74049 4.83433 5.00918 5.06875 5.16423 5.21305 5.35400 5.38296 5.56506 5.62338 5.66859 5.73167 5.86902 5.92860 5.95902 5.99314 6.03103 6.04970 6.11475 6.13203 6.20252 6.22566 6.33374 6.40941 6.60818 6.65024 6.70807 6.78094 6.80488 7.26339 7.45575 7.70134 7.82347 8.42052 9.53515 10.09864 10.44480 11.46225 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.026136 B = 0.002229 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.062569 B =12560.648342 C =13189.390408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C 0.169 3.831 4 N -0.731 5.731 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.125 4.125 14 C 0.096 3.904 15 N -0.580 5.580 16 C 0.516 3.484 17 O -0.519 6.519 18 C 0.514 3.486 19 O -0.497 6.497 20 N -0.648 5.648 21 C 0.141 3.859 22 C -0.140 4.140 23 C -0.102 4.102 24 C -0.134 4.134 25 C -0.102 4.102 26 C -0.120 4.120 27 C 0.119 3.881 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.026 0.974 32 H 0.022 0.978 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.424 0.576 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.140 0.860 45 H 0.084 0.916 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.954 -25.060 9.037 27.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.078 4.078 3 C 0.041 3.959 4 N -0.376 5.376 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.738 3.262 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.164 4.164 14 C -0.026 4.026 15 N -0.314 5.314 16 C 0.297 3.703 17 O -0.396 6.396 18 C 0.297 3.703 19 O -0.370 6.370 20 N -0.295 5.295 21 C 0.048 3.952 22 C -0.161 4.161 23 C -0.121 4.121 24 C -0.153 4.153 25 C -0.121 4.121 26 C -0.140 4.140 27 C -0.003 4.003 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.039 0.961 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.262 0.738 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.158 0.842 45 H 0.102 0.898 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.984 -24.889 9.209 27.002 hybrid contribution 0.176 0.951 -0.970 1.370 sum 5.160 -23.938 8.239 25.836 Atomic orbital electron populations 1.21767 0.93150 1.00708 1.03345 1.21855 0.96571 0.96212 0.93203 1.20648 0.96151 0.87917 0.91201 1.42374 1.62577 1.11989 1.20639 1.19206 1.26169 0.88547 1.03207 0.91188 1.24739 1.00549 0.98383 0.97254 1.69654 1.40370 1.36526 1.11513 0.86190 0.77582 0.84760 0.77642 1.21749 1.21810 1.20798 1.22932 1.02370 0.93223 0.97866 1.22704 1.01739 0.98208 0.79943 1.48373 1.59267 1.11531 1.12206 1.19359 0.80226 0.84520 0.86166 1.90813 1.51168 1.82172 1.15411 1.20372 0.77945 0.85632 0.86377 1.90713 1.48251 1.82207 1.15869 1.43156 1.62103 1.10817 1.13380 1.17779 0.95098 0.85670 0.96689 1.20976 0.95988 0.96595 1.02496 1.20960 0.99596 0.95333 0.96197 1.21194 0.96100 1.00312 0.97667 1.21090 0.97272 0.94212 0.99529 1.21337 1.00008 0.95883 0.96740 1.22297 1.01925 0.78795 0.97235 0.93440 0.92212 0.91120 0.95608 0.96069 0.78118 0.93492 0.90308 0.89469 0.90866 0.88502 0.73824 0.85401 0.85529 0.85901 0.85576 0.84218 0.89820 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.25 37.16 0.31 -1.65 16 2 C -0.08 -1.18 0.61 -152.67 -0.09 -1.28 16 3 C 0.17 3.24 5.07 -4.04 -0.02 3.22 16 4 N -0.73 -17.89 5.15 -59.91 -0.31 -18.20 16 5 C -0.24 -6.62 9.99 -15.06 -0.15 -6.78 16 6 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 9 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C -0.13 -1.51 6.02 -24.58 -0.15 -1.66 16 14 C 0.10 1.17 5.74 -2.53 -0.01 1.15 16 15 N -0.58 -8.49 3.33 -171.06 -0.57 -9.06 16 16 C 0.52 7.69 7.91 -11.63 -0.09 7.59 16 17 O -0.52 -9.00 16.81 5.49 0.09 -8.90 16 18 C 0.51 6.55 7.70 -11.63 -0.09 6.46 16 19 O -0.50 -6.63 11.21 5.47 0.06 -6.56 16 20 N -0.65 -6.88 5.32 -10.30 -0.05 -6.93 16 21 C 0.14 1.43 6.30 -83.75 -0.53 0.90 16 22 C -0.14 -1.16 9.97 -39.38 -0.39 -1.56 16 23 C -0.10 -0.74 10.04 -39.61 -0.40 -1.13 16 24 C -0.13 -0.96 10.04 -39.54 -0.40 -1.36 16 25 C -0.10 -0.84 10.04 -39.61 -0.40 -1.24 16 26 C -0.12 -1.22 8.70 -39.38 -0.34 -1.56 16 27 C 0.12 1.97 5.47 -3.06 -0.02 1.96 16 28 H 0.05 0.61 7.44 -51.93 -0.39 0.22 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.23 7.13 -51.93 -0.37 0.86 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.42 8.13 -51.93 -0.42 0.00 16 33 H 0.38 9.88 6.38 -40.82 -0.26 9.62 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 36 H 0.09 0.89 8.04 -51.93 -0.42 0.47 16 37 H 0.07 0.83 7.71 -51.93 -0.40 0.43 16 38 H 0.10 1.16 6.16 -51.92 -0.32 0.84 16 39 H 0.42 3.91 8.30 -40.82 -0.34 3.57 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.14 1.54 6.22 -52.48 -0.33 1.22 16 45 H 0.08 1.58 7.82 -51.93 -0.41 1.18 16 46 H 0.08 1.40 7.84 -51.93 -0.41 0.99 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -32.35 376.96 -8.82 -41.17 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.56 Total: 10.14 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -2.87 Total: 2.60 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.21 Total: -61.51 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.15 Total: -15.47 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.35 -8.82 -41.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278519572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.445 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds