Wall clock time and date at job start Tue Mar 31 2020 17:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 110.77969 * 2 1 4 4 N 1.46500 * 109.46757 * 298.21049 * 3 2 1 5 5 C 1.36943 * 119.99608 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99792 * 0.02562 * 5 4 3 7 7 C 1.38810 * 120.00197 * 180.02562 * 5 4 3 8 8 N 1.31624 * 119.99589 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00315 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47173 * 89.99977 * 9 7 5 11 11 H 1.48499 * 109.47369 * 209.99960 * 9 7 5 12 12 H 1.48502 * 109.47004 * 330.00165 * 9 7 5 13 13 C 1.55156 * 110.71561 * 123.23670 * 2 1 3 14 14 C 1.54907 * 101.58091 * 82.86170 * 13 2 1 15 15 N 1.47430 * 104.83539 * 37.01054 * 14 13 2 16 16 C 1.34768 * 125.65328 * 156.13823 * 15 14 13 17 17 O 1.21356 * 120.00431 * 179.68804 * 16 15 14 18 18 C 1.49360 * 119.99994 * 359.68603 * 16 15 14 19 19 O 1.21378 * 119.99601 * 0.02562 * 18 16 15 20 20 N 1.34773 * 120.00343 * 179.97438 * 18 16 15 21 21 C 1.39721 * 120.00336 * 175.38376 * 20 18 16 22 22 C 1.38930 * 120.07474 * 214.82534 * 21 20 18 23 23 C 1.38096 * 119.92267 * 179.76815 * 22 21 20 24 24 C 1.38298 * 120.07560 * 0.52730 * 23 22 21 25 25 C 1.38296 * 120.15000 * 359.69855 * 24 23 22 26 26 C 1.38096 * 120.07442 * 0.04917 * 25 24 23 27 27 C 1.47022 * 108.69679 * 335.86940 * 15 14 13 28 28 H 1.08997 * 109.47063 * 181.78442 * 1 2 3 29 29 H 1.08999 * 109.46840 * 301.79177 * 1 2 3 30 30 H 1.09006 * 109.46377 * 61.78586 * 1 2 3 31 31 H 1.08992 * 109.46977 * 58.21343 * 3 2 1 32 32 H 1.09002 * 109.46414 * 178.21602 * 3 2 1 33 33 H 0.96991 * 120.00647 * 0.02562 * 4 3 2 34 34 H 0.96995 * 119.99708 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.99990 * 200.93205 * 13 2 1 36 36 H 1.08992 * 111.01062 * 324.74755 * 13 2 1 37 37 H 1.08992 * 110.37111 * 278.16801 * 14 13 2 38 38 H 1.09011 * 110.36648 * 155.84455 * 14 13 2 39 39 H 0.97005 * 119.99913 * 355.38166 * 20 18 16 40 40 H 1.07997 * 120.03981 * 359.97438 * 22 21 20 41 41 H 1.07997 * 119.96565 * 180.24834 * 23 22 21 42 42 H 1.08000 * 119.92589 * 179.72508 * 24 23 22 43 43 H 1.08001 * 119.96112 * 180.02562 * 25 24 23 44 44 H 1.08010 * 120.03438 * 179.97438 * 26 25 24 45 45 H 1.09002 * 109.88125 * 120.47948 * 27 15 14 46 46 H 1.09006 * 109.88256 * 241.64348 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 7 1.6356 2.1186 -1.2172 5 6 2.0031 3.4192 -1.4379 6 1 2.6157 3.9374 -0.7149 7 6 1.5885 4.0715 -2.5909 8 7 0.8416 3.4401 -3.4718 9 14 2.0892 5.8458 -2.8917 10 1 3.3750 5.8783 -3.6338 11 1 1.0394 6.5278 -3.6905 12 1 2.2512 6.5419 -1.5900 13 6 2.0789 -0.7954 1.2138 14 6 2.0125 -2.2509 0.6876 15 7 2.3716 -2.1532 -0.7390 16 6 2.8809 -3.1491 -1.4907 17 8 3.1351 -2.9564 -2.6616 18 6 3.1325 -4.4899 -0.8828 19 8 2.8779 -4.6828 0.2882 20 7 3.6413 -5.4860 -1.6347 21 6 3.9670 -6.7101 -1.0450 22 6 5.0615 -7.4337 -1.5018 23 6 5.3833 -8.6409 -0.9135 24 6 4.6111 -9.1350 0.1219 25 6 3.5182 -8.4196 0.5760 26 6 3.1937 -7.2092 -0.0043 27 6 2.0761 -0.7913 -1.2072 28 1 -0.3633 -1.0271 0.0320 29 1 -0.3633 0.5414 0.8735 30 1 -0.3632 0.4859 -0.9057 31 1 1.6957 1.9622 0.8735 32 1 3.1622 1.4057 0.0320 33 1 1.0859 1.6531 -1.8667 34 1 0.5515 3.8960 -4.2773 35 1 3.1061 -0.5073 1.4375 36 1 1.4400 -0.6657 2.0873 37 1 1.0039 -2.6488 0.7985 38 1 2.7293 -2.8788 1.2171 39 1 3.7815 -5.3531 -2.5853 40 1 5.6619 -7.0510 -2.3138 41 1 6.2363 -9.2020 -1.2654 42 1 4.8624 -10.0815 0.5773 43 1 2.9175 -8.8081 1.3851 44 1 2.3398 -6.6511 0.3505 45 1 2.9869 -0.3208 -1.5775 46 1 1.3263 -0.8256 -1.9977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278519572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:06 Heat of formation + Delta-G solvation = -37.690206 kcal Electronic energy + Delta-G solvation = -27894.378315 eV Core-core repulsion = 23976.746262 eV Total energy + Delta-G solvation = -3917.632052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.32674 -40.95998 -39.61000 -39.04886 -36.70206 -35.93700 -34.35780 -32.31340 -31.85881 -30.81755 -30.39671 -28.36665 -27.60555 -25.90054 -24.82587 -23.79457 -23.42599 -22.60399 -21.08781 -20.24026 -19.46028 -18.89304 -18.38390 -17.86808 -17.62530 -17.10123 -16.65832 -16.49539 -16.12062 -15.67647 -15.58524 -15.28504 -15.06589 -14.94468 -14.81947 -14.49402 -14.26048 -14.09178 -13.79743 -13.63611 -13.45789 -13.17978 -12.97128 -12.89085 -12.79410 -12.71963 -12.39570 -12.22013 -12.15921 -12.02439 -11.80712 -11.52085 -11.48410 -11.39133 -10.94223 -10.68213 -9.94835 -9.87771 -9.25094 -8.97826 -7.93853 -5.22039 -0.11650 0.45357 0.53381 1.03984 1.47245 1.48950 1.57175 1.93345 2.28713 2.56461 2.85276 3.07241 3.37995 3.44629 3.54972 3.77784 3.97971 4.05356 4.11105 4.25125 4.31035 4.33768 4.35712 4.43981 4.52724 4.55349 4.63721 4.69459 4.76300 4.85056 4.94658 5.01750 5.06552 5.09509 5.10777 5.18593 5.25599 5.27319 5.27857 5.47357 5.50979 5.51463 5.60998 5.86421 6.04532 6.15091 6.28194 6.47036 6.71357 7.35044 8.11055 8.33614 9.29638 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.026136 B = 0.002229 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.062569 B =12560.648342 C =13189.390408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 C 0.167 3.833 4 N -0.743 5.743 5 C -0.241 4.241 6 H 0.077 0.923 7 C -0.077 4.077 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.290 1.290 11 H -0.297 1.297 12 H -0.267 1.267 13 C -0.113 4.113 14 C 0.099 3.901 15 N -0.581 5.581 16 C 0.511 3.489 17 O -0.552 6.552 18 C 0.520 3.480 19 O -0.503 6.503 20 N -0.637 5.637 21 C 0.115 3.885 22 C -0.144 4.144 23 C -0.103 4.103 24 C -0.131 4.131 25 C -0.109 4.109 26 C -0.138 4.138 27 C 0.125 3.875 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.019 0.981 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.428 0.572 40 H 0.142 0.858 41 H 0.154 0.846 42 H 0.150 0.850 43 H 0.144 0.856 44 H 0.125 0.875 45 H 0.053 0.947 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.911 -26.843 11.209 29.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.070 4.070 3 C 0.040 3.960 4 N -0.386 5.386 5 C -0.373 4.373 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.620 5.620 9 Si 0.802 3.198 10 H -0.218 1.218 11 H -0.223 1.223 12 H -0.192 1.192 13 C -0.151 4.151 14 C -0.022 4.022 15 N -0.313 5.313 16 C 0.294 3.706 17 O -0.431 6.431 18 C 0.302 3.698 19 O -0.378 6.378 20 N -0.283 5.283 21 C 0.023 3.977 22 C -0.163 4.163 23 C -0.121 4.121 24 C -0.149 4.149 25 C -0.127 4.127 26 C -0.158 4.158 27 C 0.003 3.997 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.267 0.733 40 H 0.160 0.840 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.161 0.839 44 H 0.143 0.857 45 H 0.072 0.928 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.966 -26.707 11.440 29.660 hybrid contribution -0.053 1.368 -1.604 2.109 sum 5.912 -25.339 9.835 27.816 Atomic orbital electron populations 1.21697 0.92445 1.01919 1.02236 1.21727 0.96951 0.94015 0.94344 1.20810 0.95993 0.89904 0.89251 1.42579 1.62393 1.11453 1.22165 1.19632 1.24977 0.89775 1.02937 0.90516 1.25556 1.01444 1.02463 0.97496 1.69818 1.42213 1.38033 1.11975 0.85154 0.76710 0.80185 0.77795 1.21773 1.22329 1.19225 1.22948 1.03063 0.91950 0.97119 1.22866 1.02745 0.98443 0.78162 1.48447 1.58955 1.10599 1.13341 1.19865 0.79466 0.85437 0.85842 1.90787 1.52495 1.82921 1.16867 1.19853 0.78615 0.85017 0.86307 1.90704 1.49055 1.82115 1.15936 1.43068 1.61141 1.10680 1.13458 1.18006 0.96437 0.85661 0.97636 1.21228 0.95440 0.96882 1.02798 1.21350 1.00179 0.94855 0.95744 1.21575 0.95159 1.00993 0.97158 1.21351 0.97926 0.93586 0.99864 1.21359 1.00065 0.96932 0.97429 1.22025 0.99863 0.80256 0.97549 0.91231 0.90863 0.94432 0.94567 0.96306 0.79264 0.94130 0.89934 0.86403 0.89374 0.87775 0.73299 0.84010 0.82826 0.83193 0.83867 0.85678 0.92835 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.61 8.25 71.98 0.59 -3.02 16 2 C -0.07 -2.08 0.61 -50.99 -0.03 -2.11 16 3 C 0.17 6.36 5.07 86.38 0.44 6.80 16 4 N -0.74 -37.14 5.15 -343.45 -1.77 -38.91 16 5 C -0.24 -13.43 9.99 84.03 0.84 -12.59 16 6 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 7 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 8 N -0.97 -60.05 13.06 21.65 0.28 -59.76 16 9 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 C -0.11 -2.44 6.02 31.98 0.19 -2.24 16 14 C 0.10 2.21 5.74 86.85 0.50 2.71 16 15 N -0.58 -17.05 3.33 -813.47 -2.71 -19.76 16 16 C 0.51 15.58 7.91 87.24 0.69 16.27 16 17 O -0.55 -20.00 16.81 -3.27 -0.05 -20.05 16 18 C 0.52 13.24 7.70 87.24 0.67 13.92 16 19 O -0.50 -13.11 11.21 -3.34 -0.04 -13.15 16 20 N -0.64 -13.51 5.32 -304.84 -1.62 -15.13 16 21 C 0.12 2.26 6.30 38.21 0.24 2.50 16 22 C -0.14 -2.14 9.97 22.40 0.22 -1.92 16 23 C -0.10 -1.19 10.04 22.25 0.22 -0.97 16 24 C -0.13 -1.49 10.04 22.30 0.22 -1.27 16 25 C -0.11 -1.59 10.04 22.25 0.22 -1.36 16 26 C -0.14 -2.71 8.70 22.40 0.19 -2.51 16 27 C 0.13 4.32 5.47 86.73 0.47 4.80 16 28 H 0.07 1.68 7.44 -2.39 -0.02 1.66 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.33 7.13 -2.38 -0.02 1.31 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 32 H 0.02 0.74 8.13 -2.39 -0.02 0.72 16 33 H 0.37 20.08 6.38 -92.72 -0.59 19.49 16 34 H 0.25 15.07 8.31 -92.71 -0.77 14.29 16 35 H 0.08 1.77 8.04 -2.39 -0.02 1.75 16 36 H 0.12 1.91 8.04 -2.39 -0.02 1.89 16 37 H 0.09 1.76 7.71 -2.39 -0.02 1.74 16 38 H 0.10 2.28 6.16 -2.38 -0.01 2.26 16 39 H 0.43 8.04 8.30 -92.70 -0.77 7.27 16 40 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.15 0.92 8.06 -2.91 -0.02 0.89 16 42 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 43 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.13 2.76 6.22 -2.91 -0.02 2.75 16 45 H 0.05 2.15 7.82 -2.39 -0.02 2.13 16 46 H 0.06 2.16 7.84 -2.38 -0.02 2.14 16 Total: -1.00 -71.66 376.96 1.94 -69.72 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.35 Total: 33.40 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 6.16 Total: 14.99 kcal Atomic # 7 Polarization: -127.75 SS G_CDS: -5.82 Total: -133.56 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.09 Total: -33.20 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -71.66 1.94 -69.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278519572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.034 kcal (2) G-P(sol) polarization free energy of solvation -71.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds