Wall clock time and date at job start Tue Mar 31 2020 17:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.45939 * 2 1 4 4 C 1.36933 * 120.00178 * 60.00434 * 3 2 1 5 5 H 1.08005 * 119.99689 * 359.97438 * 4 3 2 6 6 C 1.38806 * 120.00363 * 180.02562 * 4 3 2 7 7 N 1.31626 * 120.00118 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00033 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47617 * 270.00403 * 8 6 4 10 10 H 1.48502 * 109.46817 * 30.00520 * 8 6 4 11 11 H 1.48501 * 109.47315 * 150.00132 * 8 6 4 12 12 C 1.53037 * 109.46476 * 119.97642 * 2 1 3 13 13 C 1.53164 * 109.33055 * 181.38259 * 12 2 1 14 14 N 1.46924 * 108.77042 * 305.35822 * 13 12 2 15 15 C 1.34776 * 120.63107 * 233.63155 * 14 13 12 16 16 O 1.21552 * 120.00046 * 174.37002 * 15 14 13 17 17 C 1.47860 * 119.99895 * 354.37193 * 15 14 13 18 18 C 1.39702 * 120.06958 * 324.42443 * 17 15 14 19 19 C 1.38059 * 120.14161 * 179.72020 * 18 17 15 20 20 C 1.38104 * 120.29672 * 0.55639 * 19 18 17 21 21 C 1.39665 * 120.14328 * 359.72610 * 20 19 18 22 22 C 1.47853 * 120.07437 * 180.02562 * 21 20 19 23 23 N 1.34777 * 120.00005 * 359.97362 * 22 21 20 24 24 O 1.21554 * 120.00479 * 179.97438 * 22 21 20 25 25 C 1.39289 * 120.07446 * 144.69990 * 17 15 14 26 26 C 1.46927 * 118.73716 * 53.60093 * 14 13 12 27 27 C 1.53043 * 109.45661 * 240.02927 * 2 1 3 28 28 H 1.08997 * 109.47786 * 59.99885 * 1 2 3 29 29 H 1.09004 * 109.46817 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47047 * 299.99393 * 1 2 3 31 31 H 0.97009 * 120.00077 * 240.00513 * 3 2 1 32 32 H 0.97003 * 119.99901 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.49622 * 301.32310 * 12 2 1 34 34 H 1.09008 * 109.49519 * 61.41700 * 12 2 1 35 35 H 1.09000 * 109.59218 * 185.56875 * 13 12 2 36 36 H 1.09005 * 109.70710 * 65.20779 * 13 12 2 37 37 H 1.07998 * 119.93207 * 359.97419 * 18 17 15 38 38 H 1.08005 * 119.85678 * 180.25455 * 19 18 17 39 39 H 1.08003 * 119.92659 * 179.69711 * 20 19 18 40 40 H 0.97004 * 120.00171 * 0.02562 * 23 22 21 41 41 H 0.97008 * 120.00226 * 180.02562 * 23 22 21 42 42 H 1.08005 * 120.14835 * 0.02760 * 25 17 15 43 43 H 1.09010 * 109.58485 * 186.60578 * 26 14 13 44 44 H 1.09000 * 109.70330 * 66.25455 * 26 14 13 45 45 H 1.08998 * 109.50119 * 298.58193 * 27 2 1 46 46 H 1.09009 * 109.49800 * 58.64374 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6872 2.2244 1.0270 5 1 1.0660 1.8711 1.8369 6 6 2.1491 3.5333 1.0268 7 7 1.8314 4.3435 2.0143 8 14 3.2228 4.1446 -0.3742 9 1 4.6507 3.9031 -0.0454 10 1 2.8720 3.4171 -1.6204 11 1 2.9993 5.5994 -0.5708 12 6 2.0400 -0.7209 1.2499 13 6 3.5712 -0.6890 1.2643 14 7 4.0677 -1.2493 0.0001 15 6 4.9610 -2.2584 0.0001 16 8 5.2868 -2.7818 -1.0475 17 6 5.5448 -2.7290 1.2745 18 6 5.8168 -1.8183 2.2984 19 6 6.3564 -2.2568 3.4910 20 6 6.6416 -3.5953 3.6763 21 6 6.3801 -4.5155 2.6587 22 6 6.6855 -5.9483 2.8589 23 7 7.2174 -6.3675 4.0241 24 8 6.4569 -6.7481 1.9726 25 6 5.8300 -4.0804 1.4547 26 6 3.5713 -0.6889 -1.2642 27 6 2.0398 -0.7209 -1.2501 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 2.5756 1.6987 -0.7276 32 1 2.1546 5.2582 2.0143 33 1 1.6576 -0.2209 2.1397 34 1 1.6977 -1.7558 1.2381 35 1 3.9414 -1.2850 2.0985 36 1 3.9164 0.3397 1.3686 37 1 5.6006 -0.7695 2.1581 38 1 6.5611 -1.5493 4.2810 39 1 7.0683 -3.9311 4.6099 40 1 7.3995 -5.7293 4.7316 41 1 7.4181 -7.3075 4.1554 42 1 5.6262 -4.7879 0.6645 43 1 3.9416 -1.2850 -2.0984 44 1 3.9144 0.3403 -1.3698 45 1 1.6975 -1.7557 -1.2384 46 1 1.6568 -0.2211 -2.1399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281499491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:20 Heat of formation + Delta-G solvation = -20.105657 kcal Electronic energy + Delta-G solvation = -28946.388106 eV Core-core repulsion = 25029.518577 eV Total energy + Delta-G solvation = -3916.869529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83574 -39.89013 -38.40278 -37.62517 -34.75596 -34.20411 -32.54099 -31.74552 -31.35251 -30.42401 -29.76091 -27.89209 -24.73214 -24.42444 -23.48859 -23.00524 -22.24105 -21.14048 -19.91415 -18.71919 -17.99024 -17.79175 -17.10584 -16.81780 -16.28936 -15.85523 -15.39151 -15.01810 -14.62453 -14.58618 -14.51926 -14.29613 -14.00467 -13.74136 -13.63544 -13.37470 -13.10308 -12.73880 -12.60065 -12.31594 -12.02784 -11.87169 -11.66390 -11.43254 -11.29401 -11.04702 -10.90416 -10.87192 -10.43252 -10.41337 -10.22650 -10.08700 -9.86149 -9.78605 -9.53582 -9.29828 -9.17133 -8.98423 -8.39118 -7.32951 -5.83310 -3.18826 0.41074 0.85679 2.38504 2.86959 3.04299 3.21670 3.30793 3.34296 3.40922 3.62132 4.32795 4.40007 4.52551 4.55854 4.70161 4.87832 5.06429 5.10394 5.15001 5.17871 5.35603 5.39596 5.46361 5.58540 5.61967 5.62797 5.84339 5.90160 5.91562 5.97223 6.02222 6.03553 6.12876 6.27453 6.30188 6.36662 6.37743 6.47032 6.50771 6.61347 6.66591 6.90369 6.93647 6.97674 7.55605 7.89343 7.92716 8.22061 8.36113 9.14044 9.87038 10.07209 11.34787 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016721 B = 0.003268 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.177198 B = 8565.044051 C = 9092.858202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.204 3.796 3 N -0.743 5.743 4 C -0.236 4.236 5 H 0.092 0.908 6 C 0.006 3.994 7 N -0.933 5.933 8 Si 0.877 3.123 9 H -0.285 1.285 10 H -0.278 1.278 11 H -0.292 1.292 12 C -0.134 4.134 13 C 0.101 3.899 14 N -0.594 5.594 15 C 0.556 3.444 16 O -0.544 6.544 17 C -0.131 4.131 18 C -0.059 4.059 19 C -0.133 4.133 20 C -0.067 4.067 21 C -0.152 4.152 22 C 0.566 3.434 23 N -0.852 5.852 24 O -0.536 6.536 25 C -0.006 4.006 26 C 0.116 3.884 27 C -0.133 4.133 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.129 0.871 40 H 0.401 0.599 41 H 0.405 0.595 42 H 0.145 0.855 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.823 -16.041 5.411 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.113 3.887 3 N -0.387 5.387 4 C -0.366 4.366 5 H 0.110 0.890 6 C -0.189 4.189 7 N -0.581 5.581 8 Si 0.708 3.292 9 H -0.212 1.212 10 H -0.204 1.204 11 H -0.219 1.219 12 C -0.174 4.174 13 C -0.021 4.021 14 N -0.326 5.326 15 C 0.344 3.656 16 O -0.422 6.422 17 C -0.134 4.134 18 C -0.078 4.078 19 C -0.150 4.150 20 C -0.086 4.086 21 C -0.155 4.155 22 C 0.352 3.648 23 N -0.416 5.416 24 O -0.413 6.413 25 C -0.025 4.025 26 C -0.007 4.007 27 C -0.172 4.172 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.194 0.806 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.147 0.853 40 H 0.230 0.770 41 H 0.236 0.764 42 H 0.162 0.838 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.673 -16.555 4.372 19.194 hybrid contribution 0.855 0.760 -0.349 1.196 sum 9.528 -15.795 4.023 18.880 Atomic orbital electron populations 1.22187 0.96900 0.99317 1.02507 1.19492 0.92498 0.85008 0.91721 1.42905 1.61544 1.07686 1.26526 1.18964 1.26361 0.91404 0.99861 0.88994 1.24625 1.00569 0.96309 0.97424 1.69690 1.49752 1.06418 1.32268 0.86675 0.81087 0.78321 0.83144 1.21212 1.20375 1.21873 1.22282 0.94315 0.99427 1.01343 1.22251 0.95742 0.99899 0.84213 1.48024 1.41823 1.34175 1.08531 1.18220 0.79386 0.79578 0.88374 1.90766 1.61889 1.56781 1.32813 1.19924 1.03954 0.94252 0.95293 1.21929 0.93204 1.00718 0.91924 1.21113 1.00249 0.95672 0.98013 1.21433 0.96295 0.93270 0.97554 1.19755 1.06432 0.93077 0.96263 1.18223 0.76439 0.88062 0.82045 1.43735 1.67196 1.13433 1.17268 1.90845 1.52574 1.55696 1.42232 1.21285 0.90975 0.94505 0.95772 1.21584 0.94423 0.98855 0.85800 1.22144 0.94674 1.01015 0.99340 0.93142 0.94319 0.91981 0.80595 0.93106 0.89950 0.92962 0.89989 0.89132 0.83672 0.84333 0.85281 0.76962 0.76371 0.83752 0.89410 0.91171 0.91299 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.44 37.16 0.31 -2.20 16 2 C 0.20 3.47 0.74 -131.78 -0.10 3.37 16 3 N -0.74 -15.40 3.94 -47.20 -0.19 -15.59 16 4 C -0.24 -5.89 9.16 -15.06 -0.14 -6.02 16 5 H 0.09 2.47 6.93 -52.48 -0.36 2.11 16 6 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 7 N -0.93 -27.52 13.97 55.49 0.78 -26.75 16 8 Si 0.88 20.84 27.74 -169.99 -4.71 16.13 16 9 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 C -0.13 -2.10 4.70 -26.63 -0.13 -2.23 16 13 C 0.10 1.49 4.52 -3.73 -0.02 1.47 16 14 N -0.59 -9.11 2.97 -173.89 -0.52 -9.63 16 15 C 0.56 8.89 7.38 -12.32 -0.09 8.79 16 16 O -0.54 -10.27 16.24 5.32 0.09 -10.19 16 17 C -0.13 -1.75 5.28 -105.02 -0.55 -2.30 16 18 C -0.06 -0.65 7.35 -39.10 -0.29 -0.93 16 19 C -0.13 -1.11 10.02 -39.70 -0.40 -1.50 16 20 C -0.07 -0.51 9.54 -39.10 -0.37 -0.88 16 21 C -0.15 -1.61 5.87 -105.02 -0.62 -2.22 16 22 C 0.57 6.09 8.05 -12.33 -0.10 6.00 16 23 N -0.85 -5.00 8.82 30.53 0.27 -4.73 16 24 O -0.54 -8.10 17.18 5.32 0.09 -8.01 16 25 C -0.01 -0.07 9.15 -38.78 -0.35 -0.43 16 26 C 0.12 1.79 6.17 -3.71 -0.02 1.77 16 27 C -0.13 -2.00 4.96 -26.61 -0.13 -2.13 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.15 7.27 -51.93 -0.38 0.77 16 31 H 0.36 7.58 4.33 -40.82 -0.18 7.40 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 33 H 0.08 1.41 7.31 -51.93 -0.38 1.03 16 34 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 35 H 0.08 1.04 4.45 -51.93 -0.23 0.81 16 36 H 0.09 1.53 7.65 -51.93 -0.40 1.13 16 37 H 0.15 1.58 6.05 -52.49 -0.32 1.26 16 38 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.13 0.48 6.39 -52.48 -0.34 0.15 16 40 H 0.40 1.12 6.85 -40.82 -0.28 0.84 16 41 H 0.41 1.87 8.93 -40.82 -0.36 1.50 16 42 H 0.14 2.11 7.59 -52.48 -0.40 1.72 16 43 H 0.09 1.36 7.00 -51.92 -0.36 0.99 16 44 H 0.07 1.13 6.94 -51.93 -0.36 0.77 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -33.81 363.19 -7.86 -41.67 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.05 Total: 10.99 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -3.09 Total: 0.63 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.34 Total: -56.69 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.18 Total: -18.20 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.71 Total: 16.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.81 -7.86 -41.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281499491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.569 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds