Wall clock time and date at job start Tue Mar 31 2020 17:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.45939 * 2 1 4 4 C 1.36933 * 120.00178 * 60.00434 * 3 2 1 5 5 H 1.08005 * 119.99689 * 359.97438 * 4 3 2 6 6 C 1.38806 * 120.00363 * 180.02562 * 4 3 2 7 7 N 1.31626 * 120.00118 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00033 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47617 * 270.00403 * 8 6 4 10 10 H 1.48502 * 109.46817 * 30.00520 * 8 6 4 11 11 H 1.48501 * 109.47315 * 150.00132 * 8 6 4 12 12 C 1.53037 * 109.46476 * 119.97642 * 2 1 3 13 13 C 1.53164 * 109.33055 * 181.38259 * 12 2 1 14 14 N 1.46924 * 108.77042 * 305.35822 * 13 12 2 15 15 C 1.34776 * 120.63107 * 233.63155 * 14 13 12 16 16 O 1.21552 * 120.00046 * 174.37002 * 15 14 13 17 17 C 1.47860 * 119.99895 * 354.37193 * 15 14 13 18 18 C 1.39702 * 120.06958 * 324.42443 * 17 15 14 19 19 C 1.38059 * 120.14161 * 179.72020 * 18 17 15 20 20 C 1.38104 * 120.29672 * 0.55639 * 19 18 17 21 21 C 1.39665 * 120.14328 * 359.72610 * 20 19 18 22 22 C 1.47853 * 120.07437 * 180.02562 * 21 20 19 23 23 N 1.34777 * 120.00005 * 359.97362 * 22 21 20 24 24 O 1.21554 * 120.00479 * 179.97438 * 22 21 20 25 25 C 1.39289 * 120.07446 * 144.69990 * 17 15 14 26 26 C 1.46927 * 118.73716 * 53.60093 * 14 13 12 27 27 C 1.53043 * 109.45661 * 240.02927 * 2 1 3 28 28 H 1.08997 * 109.47786 * 59.99885 * 1 2 3 29 29 H 1.09004 * 109.46817 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47047 * 299.99393 * 1 2 3 31 31 H 0.97009 * 120.00077 * 240.00513 * 3 2 1 32 32 H 0.97003 * 119.99901 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.49622 * 301.32310 * 12 2 1 34 34 H 1.09008 * 109.49519 * 61.41700 * 12 2 1 35 35 H 1.09000 * 109.59218 * 185.56875 * 13 12 2 36 36 H 1.09005 * 109.70710 * 65.20779 * 13 12 2 37 37 H 1.07998 * 119.93207 * 359.97419 * 18 17 15 38 38 H 1.08005 * 119.85678 * 180.25455 * 19 18 17 39 39 H 1.08003 * 119.92659 * 179.69711 * 20 19 18 40 40 H 0.97004 * 120.00171 * 0.02562 * 23 22 21 41 41 H 0.97008 * 120.00226 * 180.02562 * 23 22 21 42 42 H 1.08005 * 120.14835 * 0.02760 * 25 17 15 43 43 H 1.09010 * 109.58485 * 186.60578 * 26 14 13 44 44 H 1.09000 * 109.70330 * 66.25455 * 26 14 13 45 45 H 1.08998 * 109.50119 * 298.58193 * 27 2 1 46 46 H 1.09009 * 109.49800 * 58.64374 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6872 2.2244 1.0270 5 1 1.0660 1.8711 1.8369 6 6 2.1491 3.5333 1.0268 7 7 1.8314 4.3435 2.0143 8 14 3.2228 4.1446 -0.3742 9 1 4.6507 3.9031 -0.0454 10 1 2.8720 3.4171 -1.6204 11 1 2.9993 5.5994 -0.5708 12 6 2.0400 -0.7209 1.2499 13 6 3.5712 -0.6890 1.2643 14 7 4.0677 -1.2493 0.0001 15 6 4.9610 -2.2584 0.0001 16 8 5.2868 -2.7818 -1.0475 17 6 5.5448 -2.7290 1.2745 18 6 5.8168 -1.8183 2.2984 19 6 6.3564 -2.2568 3.4910 20 6 6.6416 -3.5953 3.6763 21 6 6.3801 -4.5155 2.6587 22 6 6.6855 -5.9483 2.8589 23 7 7.2174 -6.3675 4.0241 24 8 6.4569 -6.7481 1.9726 25 6 5.8300 -4.0804 1.4547 26 6 3.5713 -0.6889 -1.2642 27 6 2.0398 -0.7209 -1.2501 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 2.5756 1.6987 -0.7276 32 1 2.1546 5.2582 2.0143 33 1 1.6576 -0.2209 2.1397 34 1 1.6977 -1.7558 1.2381 35 1 3.9414 -1.2850 2.0985 36 1 3.9164 0.3397 1.3686 37 1 5.6006 -0.7695 2.1581 38 1 6.5611 -1.5493 4.2810 39 1 7.0683 -3.9311 4.6099 40 1 7.3995 -5.7293 4.7316 41 1 7.4181 -7.3075 4.1554 42 1 5.6262 -4.7879 0.6645 43 1 3.9416 -1.2850 -2.0984 44 1 3.9144 0.3403 -1.3698 45 1 1.6975 -1.7557 -1.2384 46 1 1.6568 -0.2211 -2.1399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281499491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:19 Heat of formation + Delta-G solvation = -45.043428 kcal Electronic energy + Delta-G solvation = -28947.469489 eV Core-core repulsion = 25029.518577 eV Total energy + Delta-G solvation = -3917.950912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.89841 -40.88026 -39.56392 -38.75060 -36.20806 -34.98551 -34.25856 -32.88890 -32.17839 -31.60492 -31.44808 -29.19875 -25.85400 -25.52009 -25.08160 -24.22133 -23.36928 -22.02145 -21.03254 -19.85482 -19.73095 -19.01466 -17.98151 -17.84651 -17.17008 -16.96736 -16.61029 -16.35285 -15.94602 -15.79206 -15.54704 -15.46654 -15.15905 -14.98287 -14.80867 -14.62366 -14.38083 -14.35148 -13.76529 -13.66804 -13.32378 -12.96905 -12.89186 -12.73662 -12.68446 -12.57583 -12.48280 -12.16450 -11.98726 -11.79343 -11.62899 -11.32141 -11.15720 -11.03632 -10.84922 -10.76598 -10.14055 -10.01573 -9.70920 -9.18426 -7.91512 -5.22599 -0.40416 -0.01854 1.41357 1.42667 1.47189 1.49399 1.79760 1.97749 2.46873 2.54813 2.75760 3.32544 3.40412 3.55865 3.71753 3.80711 3.88291 3.89998 4.00577 4.08902 4.10923 4.22342 4.31410 4.38711 4.50105 4.60321 4.63513 4.75710 4.82827 4.85932 4.96711 5.00914 5.04541 5.10494 5.14878 5.17273 5.23706 5.27248 5.31052 5.54620 5.60628 5.68729 5.84506 5.92225 6.31910 6.33511 6.38080 6.99163 7.18679 7.24816 7.95151 8.13730 9.29895 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016721 B = 0.003268 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.177198 B = 8565.044051 C = 9092.858202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.195 3.805 3 N -0.742 5.742 4 C -0.197 4.197 5 H 0.068 0.932 6 C -0.059 4.059 7 N -0.984 5.984 8 Si 0.934 3.066 9 H -0.282 1.282 10 H -0.257 1.257 11 H -0.307 1.307 12 C -0.130 4.130 13 C 0.108 3.892 14 N -0.592 5.592 15 C 0.554 3.446 16 O -0.582 6.582 17 C -0.150 4.150 18 C -0.065 4.065 19 C -0.121 4.121 20 C -0.042 4.042 21 C -0.157 4.157 22 C 0.563 3.437 23 N -0.823 5.823 24 O -0.591 6.591 25 C -0.025 4.025 26 C 0.113 3.887 27 C -0.124 4.124 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.037 0.963 31 H 0.361 0.639 32 H 0.253 0.747 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.144 0.856 38 H 0.175 0.825 39 H 0.180 0.820 40 H 0.420 0.580 41 H 0.415 0.585 42 H 0.115 0.885 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.116 -17.385 6.951 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.106 3.894 3 N -0.386 5.386 4 C -0.328 4.328 5 H 0.086 0.914 6 C -0.250 4.250 7 N -0.636 5.636 8 Si 0.764 3.236 9 H -0.209 1.209 10 H -0.182 1.182 11 H -0.235 1.235 12 C -0.170 4.170 13 C -0.013 4.013 14 N -0.323 5.323 15 C 0.344 3.656 16 O -0.463 6.463 17 C -0.153 4.153 18 C -0.084 4.084 19 C -0.138 4.138 20 C -0.061 4.061 21 C -0.160 4.160 22 C 0.349 3.651 23 N -0.388 5.388 24 O -0.473 6.473 25 C -0.045 4.045 26 C -0.009 4.009 27 C -0.162 4.162 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.195 0.805 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.089 0.911 37 H 0.162 0.838 38 H 0.192 0.808 39 H 0.197 0.803 40 H 0.253 0.747 41 H 0.247 0.753 42 H 0.133 0.867 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.976 -17.945 5.942 21.375 hybrid contribution 0.449 1.044 -0.718 1.344 sum 10.426 -16.902 5.224 20.534 Atomic orbital electron populations 1.22119 0.96348 1.00785 1.01143 1.19780 0.92824 0.83303 0.93541 1.42931 1.61471 1.08809 1.25379 1.18881 1.23281 0.91293 0.99366 0.91381 1.25220 1.03049 0.96956 0.99798 1.69846 1.52432 1.06586 1.34752 0.85725 0.79581 0.76907 0.81413 1.20900 1.18234 1.23481 1.22212 0.94919 1.00041 0.99784 1.22188 0.95014 0.99230 0.84910 1.48044 1.41669 1.34004 1.08566 1.18690 0.78879 0.79031 0.89021 1.90733 1.63140 1.57999 1.34472 1.19708 1.05909 0.94742 0.94927 1.22003 0.93768 1.00174 0.92437 1.21536 0.98217 0.96629 0.97460 1.21923 0.93763 0.92280 0.98102 1.19835 1.06365 0.93705 0.96135 1.18342 0.76352 0.87783 0.82607 1.43507 1.64816 1.14519 1.15989 1.90826 1.55204 1.56882 1.44352 1.21129 0.92786 0.94044 0.96548 1.21579 0.94806 0.98427 0.86105 1.22070 0.94118 1.01540 0.98472 0.93457 0.91494 0.94334 0.80490 0.93842 0.91477 0.91106 0.87574 0.91147 0.83819 0.80767 0.80324 0.74725 0.75279 0.86703 0.89509 0.91868 0.89897 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 8.44 71.98 0.61 -4.05 16 2 C 0.19 6.38 0.74 3.63 0.00 6.39 16 3 N -0.74 -30.16 3.94 -303.23 -1.20 -31.36 16 4 C -0.20 -9.87 9.16 84.03 0.77 -9.10 16 5 H 0.07 3.73 6.93 -2.91 -0.02 3.71 16 6 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 7 N -0.98 -59.52 13.97 21.65 0.30 -59.22 16 8 Si 0.93 43.26 27.74 68.60 1.90 45.16 16 9 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 10 H -0.26 -10.88 6.52 99.48 0.65 -10.23 16 11 H -0.31 -14.93 7.11 99.48 0.71 -14.23 16 12 C -0.13 -3.92 4.70 30.66 0.14 -3.78 16 13 C 0.11 3.09 4.52 86.35 0.39 3.48 16 14 N -0.59 -17.82 2.97 -822.34 -2.44 -20.27 16 15 C 0.55 17.82 7.38 86.79 0.64 18.46 16 16 O -0.58 -22.67 16.24 -3.88 -0.06 -22.73 16 17 C -0.15 -3.92 5.28 -20.12 -0.11 -4.03 16 18 C -0.07 -1.29 7.35 22.58 0.17 -1.12 16 19 C -0.12 -1.49 10.02 22.20 0.22 -1.27 16 20 C -0.04 -0.45 9.54 22.58 0.22 -0.23 16 21 C -0.16 -3.01 5.87 -20.12 -0.12 -3.13 16 22 C 0.56 11.23 8.05 86.79 0.70 11.92 16 23 N -0.82 -6.89 8.82 -175.60 -1.55 -8.44 16 24 O -0.59 -18.08 17.18 -3.89 -0.07 -18.15 16 25 C -0.02 -0.66 9.15 22.79 0.21 -0.45 16 26 C 0.11 3.41 6.17 86.36 0.53 3.95 16 27 C -0.12 -3.49 4.96 30.67 0.15 -3.33 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 30 H 0.04 1.40 7.27 -2.39 -0.02 1.39 16 31 H 0.36 14.69 4.33 -92.70 -0.40 14.29 16 32 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.07 2.26 7.31 -2.39 -0.02 2.24 16 34 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.11 2.53 4.45 -2.39 -0.01 2.52 16 36 H 0.07 2.33 7.65 -2.38 -0.02 2.31 16 37 H 0.14 2.87 6.05 -2.91 -0.02 2.85 16 38 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.18 0.09 6.39 -2.91 -0.02 0.08 16 40 H 0.42 0.24 6.85 -92.71 -0.64 -0.40 16 41 H 0.41 2.59 8.93 -92.70 -0.83 1.76 16 42 H 0.11 3.65 7.59 -2.91 -0.02 3.62 16 43 H 0.09 2.66 7.00 -2.38 -0.02 2.64 16 44 H 0.06 1.99 6.94 -2.39 -0.02 1.97 16 45 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -78.10 363.19 1.01 -77.09 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -0.87 Total: 26.97 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 4.99 Total: 10.95 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -4.89 Total: -119.29 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -0.13 Total: -40.88 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.90 Total: 45.16 kcal Total: -78.10 1.01 -77.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281499491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.047 kcal (2) G-P(sol) polarization free energy of solvation -78.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds