Wall clock time and date at job start Tue Mar 31 2020 17:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38357 * 119.40229 * 2 1 4 4 C 1.38338 * 119.45248 * 179.76356 * 3 2 1 5 5 C 1.50700 * 120.82484 * 180.25469 * 4 3 2 6 6 C 1.39985 * 118.35316 * 0.50098 * 4 3 2 7 7 C 1.47524 * 120.59878 * 179.77604 * 6 4 3 8 8 O 1.21589 * 120.00189 * 269.71933 * 7 6 4 9 9 N 1.34779 * 119.99654 * 89.72398 * 7 6 4 10 10 C 1.47883 * 134.34006 * 179.97438 * 9 7 6 11 11 C 1.52375 * 85.59008 * 156.49220 * 10 9 7 12 12 C 1.47886 * 134.34631 * 359.96976 * 9 7 6 13 13 C 1.53656 * 116.38714 * 264.16952 * 11 10 9 14 14 C 1.54595 * 102.73046 * 264.51339 * 13 11 10 15 15 N 1.47129 * 107.37039 * 339.24518 * 14 13 11 16 16 C 1.36937 * 125.58910 * 179.03997 * 15 14 13 17 17 H 1.07999 * 120.00205 * 174.83148 * 16 15 14 18 18 C 1.38816 * 120.00254 * 354.82785 * 16 15 14 19 19 N 1.31624 * 119.99723 * 7.06062 * 18 16 15 20 20 Si 1.86793 * 120.00175 * 187.06509 * 18 16 15 21 21 H 1.48506 * 109.47215 * 94.98955 * 20 18 16 22 22 H 1.48501 * 109.47078 * 214.98491 * 20 18 16 23 23 H 1.48496 * 109.47178 * 334.98830 * 20 18 16 24 24 C 1.47727 * 108.82608 * 359.07747 * 15 14 13 25 25 C 1.40282 * 118.80342 * 359.50616 * 6 4 3 26 26 O 1.35424 * 119.80289 * 180.27169 * 25 6 4 27 27 N 1.31872 * 119.40958 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46781 * 269.97727 * 1 2 3 29 29 H 1.08999 * 109.47482 * 29.97548 * 1 2 3 30 30 H 1.08996 * 109.47319 * 149.97853 * 1 2 3 31 31 H 1.07993 * 120.27527 * 0.04969 * 3 2 1 32 32 H 1.09001 * 109.47392 * 270.25347 * 5 4 3 33 33 H 1.09007 * 109.47071 * 30.25165 * 5 4 3 34 34 H 1.09001 * 109.47207 * 150.25296 * 5 4 3 35 35 H 1.09002 * 113.85460 * 42.32552 * 10 9 7 36 36 H 1.08997 * 113.97520 * 270.67359 * 10 9 7 37 37 H 1.08996 * 113.85752 * 89.33563 * 12 9 7 38 38 H 1.09005 * 113.84775 * 317.67289 * 12 9 7 39 39 H 1.09003 * 110.75358 * 146.20681 * 13 11 10 40 40 H 1.09001 * 110.75955 * 22.82752 * 13 11 10 41 41 H 1.09001 * 109.86640 * 219.79879 * 14 13 11 42 42 H 1.08999 * 109.86584 * 98.69772 * 14 13 11 43 43 H 0.96993 * 119.99962 * 179.97438 * 19 18 16 44 44 H 1.08994 * 110.40526 * 141.25207 * 24 15 14 45 45 H 1.09003 * 110.39649 * 263.54442 * 24 15 14 46 46 H 0.96712 * 113.99594 * 89.99449 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2054 0.0000 4 6 3.5697 1.2066 0.0050 5 6 4.3407 2.5014 0.0109 6 6 4.2356 -0.0247 -0.0009 7 6 5.7097 -0.0812 -0.0010 8 8 6.3172 -0.1045 -1.0540 9 7 6.3831 -0.1071 1.1663 10 6 7.8148 -0.1624 1.5326 11 6 7.3800 0.4611 2.8532 12 6 5.9843 -0.0913 2.5903 13 6 7.5015 1.9891 2.9597 14 6 8.8735 2.1746 3.6476 15 7 9.1986 0.9108 4.3271 16 6 10.3417 0.6592 5.0380 17 1 10.4517 -0.2734 5.5714 18 6 11.3591 1.6029 5.0731 19 7 11.1719 2.7925 4.5416 20 14 12.9938 1.1847 5.8743 21 1 13.9473 0.7144 4.8374 22 1 13.5426 2.3936 6.5396 23 1 12.7911 0.1136 6.8827 24 6 8.0902 -0.0428 4.1160 25 6 3.4758 -1.2040 -0.0010 26 8 4.0992 -2.4063 -0.0010 27 7 2.1546 -1.1488 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5141 31 1 1.6411 2.1376 0.0008 32 1 4.5264 2.8184 -1.0153 33 1 3.7620 3.2665 0.5284 34 1 5.2914 2.3558 0.5238 35 1 8.4499 0.4847 0.9276 36 1 8.2079 -1.1742 1.6311 37 1 5.8157 -1.0822 3.0119 38 1 5.1823 0.6117 2.8156 39 1 6.7015 2.3982 3.5768 40 1 7.5003 2.4467 1.9704 41 1 8.8162 2.9830 4.3766 42 1 9.6348 2.4002 2.9009 43 1 11.8826 3.4520 4.5664 44 1 8.4792 -1.0486 3.9576 45 1 7.4100 -0.0292 4.9677 46 1 4.2803 -2.7554 0.8825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001313441447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:41 Heat of formation + Delta-G solvation = 25.617960 kcal Electronic energy + Delta-G solvation = -28870.466410 eV Core-core repulsion = 24955.579606 eV Total energy + Delta-G solvation = -3914.886804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.26195 -40.27515 -38.15796 -37.61268 -35.65260 -34.45832 -32.28479 -32.03725 -29.84950 -28.97800 -28.28481 -27.75173 -26.24664 -25.67955 -23.88616 -23.30632 -21.81979 -20.37072 -19.74910 -18.70437 -18.42898 -17.53178 -17.27627 -16.76297 -16.32701 -15.74538 -15.29579 -14.97387 -14.72258 -14.50511 -14.24655 -13.84239 -13.65067 -13.58018 -13.32388 -13.26042 -12.94923 -12.72213 -12.47538 -12.42258 -12.25507 -12.09913 -11.97663 -11.89771 -11.85404 -11.14677 -10.96302 -10.78112 -10.56867 -10.34653 -10.14928 -10.02449 -9.96058 -9.79885 -9.73120 -9.50926 -9.06646 -8.64031 -8.61835 -6.88856 -5.77246 -3.09843 0.51183 0.81110 2.50535 2.76477 3.10185 3.33336 3.37769 3.43276 3.45118 4.09572 4.22648 4.32308 4.42275 4.59547 4.68837 4.87135 4.90348 4.96720 5.08216 5.16111 5.20966 5.26975 5.32039 5.39335 5.43497 5.46699 5.52327 5.58991 5.63029 5.74809 5.77031 5.78041 5.88154 5.94499 6.11669 6.13110 6.17499 6.39770 6.42402 6.58332 6.62401 7.15441 7.49221 7.56245 7.56651 7.69023 7.77398 8.09937 8.19844 9.16387 9.76738 10.42004 11.34784 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024615 B = 0.002742 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.261198 B =10209.839566 C =10465.262058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.165 3.835 3 C -0.186 4.186 4 C 0.012 3.988 5 C -0.126 4.126 6 C -0.191 4.191 7 C 0.593 3.407 8 O -0.530 6.530 9 N -0.634 5.634 10 C 0.133 3.867 11 C -0.103 4.103 12 C 0.113 3.887 13 C -0.119 4.119 14 C 0.178 3.822 15 N -0.604 5.604 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.151 3.849 25 C 0.353 3.647 26 O -0.473 6.473 27 N -0.506 5.506 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.042 0.958 42 H 0.049 0.951 43 H 0.253 0.747 44 H 0.043 0.957 45 H 0.025 0.975 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.924 -2.743 -6.015 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.027 3.973 3 C -0.206 4.206 4 C 0.004 3.996 5 C -0.182 4.182 6 C -0.197 4.197 7 C 0.381 3.619 8 O -0.406 6.406 9 N -0.369 5.369 10 C 0.012 3.988 11 C -0.105 4.105 12 C -0.010 4.010 13 C -0.157 4.157 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.358 4.358 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.025 3.975 25 C 0.173 3.827 26 O -0.280 6.280 27 N -0.227 5.227 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.043 0.957 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -20.916 -3.388 -7.317 22.416 hybrid contribution 1.387 0.350 0.875 1.677 sum -19.529 -3.039 -6.442 20.787 Atomic orbital electron populations 1.20792 0.88124 1.03886 1.03524 1.21164 0.96960 0.87057 0.92108 1.21783 0.93589 0.99634 1.05573 1.20299 0.93661 0.94276 0.91334 1.20967 1.00439 0.92956 1.03836 1.20824 0.94873 0.94107 1.09906 1.17392 0.85591 0.76205 0.82745 1.90821 1.69165 1.50124 1.30486 1.50277 1.09807 1.72048 1.04783 1.22996 0.81742 1.01152 0.92932 1.22455 0.93660 0.98192 0.96154 1.23108 0.98322 1.01026 0.78529 1.22535 1.00936 0.91745 1.00493 1.21223 0.89649 0.88679 0.95085 1.44523 1.17623 1.09711 1.61212 1.19035 0.91451 1.01873 1.23486 0.90375 1.24818 0.98394 0.96105 1.00919 1.69966 1.32292 1.04288 1.50082 0.86132 0.84075 0.77176 0.78575 1.21592 1.21798 1.20634 1.21218 0.90257 0.93899 0.92168 1.18952 0.86334 0.84377 0.93025 1.84757 1.76693 1.32710 1.33862 1.67032 1.09025 1.30454 1.16143 0.89859 0.90214 0.90155 0.83770 0.89593 0.90013 0.90344 0.89650 0.89392 0.89566 0.90217 0.91871 0.92049 0.93957 0.93319 0.93710 0.93904 0.95738 0.73913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.16 36.01 0.37 -0.28 16 2 C 0.16 1.61 6.78 -82.53 -0.56 1.05 16 3 C -0.19 -1.67 9.41 -39.50 -0.37 -2.04 16 4 C 0.01 0.14 5.95 -103.93 -0.62 -0.48 16 5 C -0.13 -1.23 9.69 36.01 0.35 -0.88 16 6 C -0.19 -2.57 5.39 -104.69 -0.56 -3.13 16 7 C 0.59 9.35 5.65 -12.47 -0.07 9.28 16 8 O -0.53 -10.57 17.83 5.29 0.09 -10.47 16 9 N -0.63 -8.92 3.62 -188.17 -0.68 -9.60 16 10 C 0.13 2.05 8.14 -3.60 -0.03 2.02 16 11 C -0.10 -1.56 0.99 -154.84 -0.15 -1.71 16 12 C 0.11 1.33 7.97 -3.60 -0.03 1.30 16 13 C -0.12 -1.99 6.33 -25.55 -0.16 -2.15 16 14 C 0.18 4.04 5.40 -2.86 -0.02 4.03 16 15 N -0.60 -14.35 3.41 -170.51 -0.58 -14.94 16 16 C -0.23 -6.12 10.27 -15.06 -0.15 -6.28 16 17 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 18 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 19 N -0.92 -26.22 10.35 55.49 0.57 -25.64 16 20 Si 0.91 21.56 29.56 -169.99 -5.02 16.54 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.15 2.75 6.66 -3.16 -0.02 2.73 16 25 C 0.35 4.67 7.77 -16.61 -0.13 4.54 16 26 O -0.47 -5.96 13.01 -17.96 -0.23 -6.19 16 27 N -0.51 -6.29 10.28 -9.21 -0.09 -6.38 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.59 8.10 -51.93 -0.42 0.16 16 34 H 0.08 0.90 7.19 -51.93 -0.37 0.53 16 35 H 0.09 1.46 8.12 -51.93 -0.42 1.04 16 36 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 41 H 0.04 1.07 7.60 -51.93 -0.39 0.68 16 42 H 0.05 1.25 7.30 -51.93 -0.38 0.87 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 45 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.40 3.10 9.06 45.56 0.41 3.51 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -34.66 382.14 -8.62 -43.28 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.18 Total: -0.10 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -2.26 Total: 7.74 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.78 Total: -56.56 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.14 Total: -16.66 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.66 -8.62 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001313441447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.901 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds