Wall clock time and date at job start Tue Mar 31 2020 17:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38357 * 119.40229 * 2 1 4 4 C 1.38338 * 119.45248 * 179.76356 * 3 2 1 5 5 C 1.50700 * 120.82484 * 180.25469 * 4 3 2 6 6 C 1.39985 * 118.35316 * 0.50098 * 4 3 2 7 7 C 1.47524 * 120.59878 * 179.77604 * 6 4 3 8 8 O 1.21589 * 120.00189 * 269.71933 * 7 6 4 9 9 N 1.34779 * 119.99654 * 89.72398 * 7 6 4 10 10 C 1.47883 * 134.34006 * 179.97438 * 9 7 6 11 11 C 1.52375 * 85.59008 * 156.49220 * 10 9 7 12 12 C 1.47886 * 134.34631 * 359.96976 * 9 7 6 13 13 C 1.53656 * 116.38714 * 264.16952 * 11 10 9 14 14 C 1.54595 * 102.73046 * 264.51339 * 13 11 10 15 15 N 1.47129 * 107.37039 * 339.24518 * 14 13 11 16 16 C 1.36937 * 125.58910 * 179.03997 * 15 14 13 17 17 H 1.07999 * 120.00205 * 174.83148 * 16 15 14 18 18 C 1.38816 * 120.00254 * 354.82785 * 16 15 14 19 19 N 1.31624 * 119.99723 * 7.06062 * 18 16 15 20 20 Si 1.86793 * 120.00175 * 187.06509 * 18 16 15 21 21 H 1.48506 * 109.47215 * 94.98955 * 20 18 16 22 22 H 1.48501 * 109.47078 * 214.98491 * 20 18 16 23 23 H 1.48496 * 109.47178 * 334.98830 * 20 18 16 24 24 C 1.47727 * 108.82608 * 359.07747 * 15 14 13 25 25 C 1.40282 * 118.80342 * 359.50616 * 6 4 3 26 26 O 1.35424 * 119.80289 * 180.27169 * 25 6 4 27 27 N 1.31872 * 119.40958 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46781 * 269.97727 * 1 2 3 29 29 H 1.08999 * 109.47482 * 29.97548 * 1 2 3 30 30 H 1.08996 * 109.47319 * 149.97853 * 1 2 3 31 31 H 1.07993 * 120.27527 * 0.04969 * 3 2 1 32 32 H 1.09001 * 109.47392 * 270.25347 * 5 4 3 33 33 H 1.09007 * 109.47071 * 30.25165 * 5 4 3 34 34 H 1.09001 * 109.47207 * 150.25296 * 5 4 3 35 35 H 1.09002 * 113.85460 * 42.32552 * 10 9 7 36 36 H 1.08997 * 113.97520 * 270.67359 * 10 9 7 37 37 H 1.08996 * 113.85752 * 89.33563 * 12 9 7 38 38 H 1.09005 * 113.84775 * 317.67289 * 12 9 7 39 39 H 1.09003 * 110.75358 * 146.20681 * 13 11 10 40 40 H 1.09001 * 110.75955 * 22.82752 * 13 11 10 41 41 H 1.09001 * 109.86640 * 219.79879 * 14 13 11 42 42 H 1.08999 * 109.86584 * 98.69772 * 14 13 11 43 43 H 0.96993 * 119.99962 * 179.97438 * 19 18 16 44 44 H 1.08994 * 110.40526 * 141.25207 * 24 15 14 45 45 H 1.09003 * 110.39649 * 263.54442 * 24 15 14 46 46 H 0.96712 * 113.99594 * 89.99449 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2054 0.0000 4 6 3.5697 1.2066 0.0050 5 6 4.3407 2.5014 0.0109 6 6 4.2356 -0.0247 -0.0009 7 6 5.7097 -0.0812 -0.0010 8 8 6.3172 -0.1045 -1.0540 9 7 6.3831 -0.1071 1.1663 10 6 7.8148 -0.1624 1.5326 11 6 7.3800 0.4611 2.8532 12 6 5.9843 -0.0913 2.5903 13 6 7.5015 1.9891 2.9597 14 6 8.8735 2.1746 3.6476 15 7 9.1986 0.9108 4.3271 16 6 10.3417 0.6592 5.0380 17 1 10.4517 -0.2734 5.5714 18 6 11.3591 1.6029 5.0731 19 7 11.1719 2.7925 4.5416 20 14 12.9938 1.1847 5.8743 21 1 13.9473 0.7144 4.8374 22 1 13.5426 2.3936 6.5396 23 1 12.7911 0.1136 6.8827 24 6 8.0902 -0.0428 4.1160 25 6 3.4758 -1.2040 -0.0010 26 8 4.0992 -2.4063 -0.0010 27 7 2.1546 -1.1488 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5141 31 1 1.6411 2.1376 0.0008 32 1 4.5264 2.8184 -1.0153 33 1 3.7620 3.2665 0.5284 34 1 5.2914 2.3558 0.5238 35 1 8.4499 0.4847 0.9276 36 1 8.2079 -1.1742 1.6311 37 1 5.8157 -1.0822 3.0119 38 1 5.1823 0.6117 2.8156 39 1 6.7015 2.3982 3.5768 40 1 7.5003 2.4467 1.9704 41 1 8.8162 2.9830 4.3766 42 1 9.6348 2.4002 2.9009 43 1 11.8826 3.4520 4.5664 44 1 8.4792 -1.0486 3.9576 45 1 7.4100 -0.0292 4.9677 46 1 4.2803 -2.7554 0.8825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001313441447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:40 Heat of formation + Delta-G solvation = -0.959951 kcal Electronic energy + Delta-G solvation = -28871.618915 eV Core-core repulsion = 24955.579606 eV Total energy + Delta-G solvation = -3916.039309 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.26029 -41.36708 -39.44617 -38.46827 -37.26205 -35.28160 -34.07963 -32.82960 -31.34731 -30.41514 -29.31092 -28.50141 -27.35263 -27.23264 -25.45364 -24.26437 -22.63152 -22.13776 -20.86116 -19.77225 -19.55345 -18.65254 -18.46760 -18.20486 -17.52387 -16.76235 -16.65014 -16.46199 -16.13532 -15.58541 -15.37822 -15.04868 -14.78529 -14.46438 -14.24765 -14.10568 -13.97181 -13.90646 -13.74800 -13.68057 -13.32383 -13.24395 -13.00412 -12.88957 -12.81428 -12.79584 -12.63194 -12.37550 -12.01008 -11.97048 -11.82177 -11.74284 -11.34623 -11.20438 -10.65721 -10.62802 -10.50564 -9.87409 -9.81933 -8.84747 -7.83576 -5.16471 -0.30116 0.02021 1.34437 1.47352 1.49199 1.57310 1.65617 2.33644 2.51308 2.52637 3.14476 3.27421 3.41993 3.49963 3.54523 3.60118 3.80210 3.98575 4.05263 4.16118 4.18797 4.23312 4.36738 4.47939 4.50111 4.56923 4.60864 4.62871 4.66350 4.73119 4.83721 4.84073 4.91702 4.96676 5.00089 5.04673 5.12487 5.17531 5.19521 5.20796 5.50619 5.52176 5.68837 5.80116 6.22577 6.41991 6.54686 6.79123 6.91546 7.13215 7.81345 8.45152 9.27373 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024615 B = 0.002742 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.261198 B =10209.839566 C =10465.262058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.162 3.838 3 C -0.174 4.174 4 C 0.007 3.993 5 C -0.124 4.124 6 C -0.213 4.213 7 C 0.597 3.403 8 O -0.585 6.585 9 N -0.628 5.628 10 C 0.125 3.875 11 C -0.094 4.094 12 C 0.131 3.869 13 C -0.101 4.101 14 C 0.187 3.813 15 N -0.626 5.626 16 C -0.235 4.235 17 H 0.086 0.914 18 C -0.067 4.067 19 N -0.951 5.951 20 Si 0.972 3.028 21 H -0.292 1.292 22 H -0.298 1.298 23 H -0.265 1.265 24 C 0.149 3.851 25 C 0.342 3.658 26 O -0.491 6.491 27 N -0.527 5.527 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.184 0.816 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.006 0.994 42 H 0.005 0.995 43 H 0.244 0.756 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.300 -3.288 -5.174 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.024 3.976 3 C -0.193 4.193 4 C -0.001 4.001 5 C -0.180 4.180 6 C -0.220 4.220 7 C 0.386 3.614 8 O -0.465 6.465 9 N -0.361 5.361 10 C 0.003 3.997 11 C -0.095 4.095 12 C 0.010 3.990 13 C -0.139 4.139 14 C 0.062 3.938 15 N -0.353 5.353 16 C -0.364 4.364 17 H 0.104 0.896 18 C -0.260 4.260 19 N -0.600 5.600 20 Si 0.801 3.199 21 H -0.219 1.219 22 H -0.225 1.225 23 H -0.190 1.190 24 C 0.024 3.976 25 C 0.163 3.837 26 O -0.301 6.301 27 N -0.248 5.248 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.201 0.799 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.137 0.863 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -24.333 -3.977 -6.426 25.480 hybrid contribution 2.362 0.501 0.626 2.495 sum -21.971 -3.476 -5.800 22.988 Atomic orbital electron populations 1.20931 0.85384 1.04931 1.04855 1.21891 0.98707 0.86659 0.90303 1.22163 0.92602 1.00969 1.03550 1.20546 0.94779 0.93709 0.91095 1.20993 0.99831 0.93341 1.03833 1.20702 0.93079 0.95444 1.12769 1.17750 0.86616 0.74906 0.82084 1.90783 1.70548 1.52750 1.32423 1.50235 1.09119 1.71109 1.05664 1.22996 0.82539 1.01269 0.92874 1.22284 0.96087 0.96652 0.94505 1.23234 0.96275 1.03097 0.76412 1.22327 0.97864 0.93433 1.00313 1.20924 0.91875 0.87728 0.93305 1.44823 1.18393 1.11295 1.60789 1.19448 0.92415 1.01679 1.22833 0.89621 1.25612 1.01647 0.96263 1.02489 1.70188 1.32672 1.05140 1.51999 0.85147 0.80109 0.76868 0.77780 1.21935 1.22506 1.18954 1.21419 0.89093 0.93150 0.93929 1.19042 0.86788 0.84270 0.93579 1.84709 1.76880 1.32888 1.35619 1.67124 1.08526 1.31957 1.17164 0.88181 0.87555 0.90757 0.79905 0.89896 0.86837 0.92479 0.92270 0.88370 0.86293 0.87924 0.89385 0.91676 0.97562 0.97647 0.94621 0.93018 0.93830 0.72001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.16 71.24 0.72 -0.12 16 2 C 0.16 2.62 6.78 42.58 0.29 2.91 16 3 C -0.17 -2.43 9.41 22.32 0.21 -2.21 16 4 C 0.01 0.13 5.95 -19.42 -0.12 0.01 16 5 C -0.12 -2.14 9.69 71.24 0.69 -1.45 16 6 C -0.21 -5.48 5.39 -19.91 -0.11 -5.58 16 7 C 0.60 18.70 5.65 86.69 0.49 19.19 16 8 O -0.58 -24.09 17.83 -4.00 -0.07 -24.16 16 9 N -0.63 -16.94 3.62 -867.50 -3.14 -20.08 16 10 C 0.13 3.83 8.14 85.91 0.70 4.53 16 11 C -0.09 -2.68 0.99 -52.15 -0.05 -2.73 16 12 C 0.13 2.65 7.97 85.91 0.68 3.33 16 13 C -0.10 -3.33 6.33 31.36 0.20 -3.13 16 14 C 0.19 8.78 5.40 86.80 0.47 9.25 16 15 N -0.63 -30.00 3.41 -693.36 -2.36 -32.36 16 16 C -0.23 -12.58 10.27 84.03 0.86 -11.72 16 17 H 0.09 4.35 7.84 -2.91 -0.02 4.33 16 18 C -0.07 -3.75 5.48 84.86 0.46 -3.29 16 19 N -0.95 -56.64 10.35 21.65 0.22 -56.42 16 20 Si 0.97 45.18 29.56 68.60 2.03 47.21 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 24 C 0.15 5.15 6.66 86.28 0.57 5.73 16 25 C 0.34 8.63 7.77 85.13 0.66 9.30 16 26 O -0.49 -12.04 13.01 -87.19 -1.13 -13.18 16 27 N -0.53 -12.02 10.28 -296.06 -3.04 -15.07 16 28 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.11 0.32 8.07 -2.39 -0.02 0.30 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.11 1.19 8.10 -2.38 -0.02 1.17 16 34 H 0.06 1.24 7.19 -2.39 -0.02 1.22 16 35 H 0.06 2.12 8.12 -2.39 -0.02 2.10 16 36 H 0.10 2.80 8.05 -2.39 -0.02 2.78 16 37 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 1.71 8.12 -2.38 -0.02 1.69 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.06 2.10 8.06 -2.39 -0.02 2.08 16 41 H 0.01 0.33 7.60 -2.39 -0.02 0.31 16 42 H 0.01 0.29 7.30 -2.39 -0.02 0.27 16 43 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 44 H 0.05 1.71 8.00 -2.39 -0.02 1.69 16 45 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.42 5.98 9.06 -74.05 -0.67 5.31 16 Total: -1.00 -80.59 382.14 -0.43 -81.02 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.33 Total: 9.04 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: 6.74 Total: 24.00 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -8.32 Total: -123.93 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.21 Total: -37.34 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -80.59 -0.43 -81.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001313441447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.057 kcal (2) G-P(sol) polarization free energy of solvation -80.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds