Wall clock time and date at job start Tue Mar 31 2020 16:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38230 * 120.41581 * 2 1 4 4 N 1.31859 * 120.76153 * 179.97438 * 3 2 1 5 5 C 1.31890 * 121.72733 * 0.02562 * 4 3 2 6 6 C 1.38179 * 120.76263 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.41772 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47042 * 270.02776 * 7 6 5 9 9 C 1.34774 * 119.99781 * 180.02562 * 8 7 6 10 10 O 1.21348 * 120.00220 * 359.97438 * 9 8 7 11 11 C 1.49455 * 119.99737 * 179.97438 * 9 8 7 12 12 O 1.21339 * 120.00113 * 353.06609 * 11 9 8 13 13 N 1.34782 * 119.99705 * 173.06595 * 11 9 8 14 14 C 1.46923 * 120.63020 * 1.67613 * 13 11 9 15 15 C 1.52762 * 109.00834 * 233.58210 * 14 13 11 16 16 C 1.53038 * 109.38013 * 305.58796 * 15 14 13 17 17 C 1.50701 * 109.44735 * 181.25225 * 16 15 14 18 18 H 1.08000 * 120.00524 * 239.94259 * 17 16 15 19 19 C 1.37882 * 119.99835 * 59.93753 * 17 16 15 20 20 N 1.31512 * 119.99872 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99991 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46962 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.47102 * 120.00278 * 21 19 17 24 24 H 1.48499 * 109.47340 * 240.00637 * 21 19 17 25 25 C 1.53038 * 109.53836 * 61.24283 * 16 15 14 26 26 C 1.46920 * 120.63083 * 181.95344 * 13 11 9 27 27 C 1.38626 * 120.42376 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47118 * 90.00180 * 1 2 3 29 29 H 1.08998 * 109.46806 * 209.99953 * 1 2 3 30 30 H 1.09002 * 109.46901 * 329.99860 * 1 2 3 31 31 H 1.07999 * 119.62377 * 359.95598 * 3 2 1 32 32 H 1.07999 * 119.61438 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.46770 * 30.02348 * 7 6 5 34 34 H 1.08997 * 109.46845 * 150.02276 * 7 6 5 35 35 H 0.96998 * 119.99785 * 359.97438 * 8 7 6 36 36 H 1.08996 * 109.58913 * 353.41948 * 14 13 11 37 37 H 1.09003 * 109.58657 * 113.83932 * 14 13 11 38 38 H 1.09000 * 109.56271 * 185.55294 * 15 14 13 39 39 H 1.08996 * 109.38471 * 65.51871 * 15 14 13 40 40 H 1.08997 * 109.46373 * 301.21734 * 16 15 14 41 41 H 0.97005 * 119.99460 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.49842 * 178.67847 * 25 16 15 43 43 H 1.08997 * 109.52809 * 58.59764 * 25 16 15 44 44 H 1.08997 * 109.59072 * 246.16279 * 26 13 11 45 45 H 1.09001 * 109.58861 * 6.44044 * 26 13 11 46 46 H 1.08006 * 120.78593 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5254 1.2000 0.0005 5 6 4.2257 0.0824 0.0005 6 6 3.5949 -1.1470 0.0005 7 6 4.4028 -2.4191 0.0000 8 7 4.6646 -2.8307 -1.3814 9 6 5.3745 -3.9495 -1.6281 10 8 5.7972 -4.6156 -0.7061 11 6 5.6411 -4.3697 -3.0374 12 8 5.1152 -3.7777 -3.9568 13 7 6.4657 -5.4062 -3.2870 14 6 7.0810 -6.1558 -2.1833 15 6 8.5943 -6.1914 -2.3888 16 6 8.9050 -6.7506 -3.7791 17 6 10.3983 -6.8151 -3.9718 18 1 10.8637 -6.2622 -4.7743 19 6 11.1704 -7.5801 -3.1233 20 7 10.6037 -8.2537 -2.1463 21 14 13.0213 -7.6607 -3.3625 22 1 13.4074 -6.8195 -4.5239 23 1 13.7006 -7.1591 -2.1411 24 1 13.4274 -9.0670 -3.6127 25 6 8.2923 -5.8401 -4.8457 26 6 6.7712 -5.8040 -4.6679 27 6 2.2090 -1.1954 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6675 2.1277 -0.0007 32 1 5.3047 0.1287 0.0014 33 1 5.3488 -2.2489 0.5138 34 1 3.8463 -3.2031 0.5135 35 1 4.3264 -2.2985 -2.1184 36 1 6.8536 -5.6653 -1.2369 37 1 6.6925 -7.1742 -2.1720 38 1 9.0508 -6.8275 -1.6305 39 1 8.9947 -5.1811 -2.3052 40 1 8.4835 -7.7516 -3.8705 41 1 11.1469 -8.7921 -1.5496 42 1 8.5338 -6.2260 -5.8360 43 1 8.6949 -4.8327 -4.7397 44 1 6.3569 -6.7931 -4.8634 45 1 6.3372 -5.0828 -5.3605 46 1 1.6888 -2.1419 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323525695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:38 Heat of formation + Delta-G solvation = -26.021921 kcal Electronic energy + Delta-G solvation = -27714.149968 eV Core-core repulsion = 23797.023890 eV Total energy + Delta-G solvation = -3917.126078 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.96454 -40.48988 -38.53250 -37.04562 -35.66679 -34.03265 -33.50114 -32.36732 -31.21976 -30.06765 -27.83208 -27.54828 -26.34964 -24.33637 -23.48930 -22.45049 -22.12474 -21.47164 -20.36023 -18.95516 -17.51328 -17.27452 -17.12193 -16.86930 -16.34563 -15.79625 -15.64947 -15.12305 -14.68850 -14.52909 -14.28985 -14.26532 -13.86294 -13.53228 -13.48128 -13.19780 -13.09653 -13.03684 -12.90310 -12.84464 -12.65935 -12.30586 -11.89448 -11.75370 -11.42422 -10.96543 -10.84668 -10.55957 -10.35988 -10.20100 -10.06191 -9.87257 -9.71343 -9.43709 -9.36246 -9.19734 -9.17054 -8.51405 -8.31883 -8.09390 -6.00395 -4.06756 0.55725 0.82101 1.57588 2.50133 3.28668 3.34075 3.37085 3.39257 3.41003 3.80582 3.94648 4.22340 4.29231 4.42619 4.50184 4.51742 4.55150 4.70305 4.93860 5.11067 5.22101 5.29151 5.29629 5.38730 5.53902 5.62880 5.75027 5.78636 5.80608 5.87033 6.02672 6.09471 6.24584 6.25415 6.46434 6.61456 6.71576 6.80064 6.96466 7.07001 7.16573 7.30514 7.54988 7.67032 7.78494 7.87274 7.95969 8.08074 8.23139 8.42650 8.96735 9.58105 11.05048 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023271 B = 0.002220 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.929709 B =12609.393821 C =13006.124577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.140 4.140 3 C 0.105 3.895 4 N -0.481 5.481 5 C 0.114 3.886 6 C -0.156 4.156 7 C 0.164 3.836 8 N -0.702 5.702 9 C 0.513 3.487 10 O -0.500 6.500 11 C 0.499 3.501 12 O -0.546 6.546 13 N -0.558 5.558 14 C 0.044 3.956 15 C -0.121 4.121 16 C 0.045 3.955 17 C -0.512 4.512 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.285 1.285 25 C -0.122 4.122 26 C 0.106 3.894 27 C -0.056 4.056 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.413 0.587 36 H 0.142 0.858 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.035 0.965 40 H 0.027 0.973 41 H 0.260 0.740 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.697 14.315 5.831 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.142 4.142 3 C -0.053 4.053 4 N -0.188 5.188 5 C -0.043 4.043 6 C -0.159 4.159 7 C 0.040 3.960 8 N -0.356 5.356 9 C 0.295 3.705 10 O -0.375 6.375 11 C 0.281 3.719 12 O -0.426 6.426 13 N -0.289 5.289 14 C -0.076 4.076 15 C -0.159 4.159 16 C 0.026 3.974 17 C -0.550 4.550 18 H 0.073 0.927 19 C -0.140 4.140 20 N -0.529 5.529 21 Si 0.718 3.282 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.161 4.161 26 C -0.016 4.016 27 C -0.083 4.083 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.173 0.827 32 H 0.176 0.824 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.249 0.751 36 H 0.158 0.842 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.145 14.794 6.165 24.968 hybrid contribution 0.558 -0.769 -0.447 1.050 sum -18.587 14.025 5.717 23.977 Atomic orbital electron populations 1.20741 0.89916 1.03296 1.02873 1.20978 0.97833 0.94014 1.01401 1.22786 0.90001 0.97619 0.94871 1.67765 1.08321 1.31023 1.11738 1.22797 1.00634 0.86921 0.93956 1.20868 0.94638 0.96261 1.04107 1.20199 0.99738 0.92761 0.83265 1.45846 1.54633 1.26106 1.09022 1.20460 0.78526 0.81126 0.90373 1.90394 1.48641 1.52075 1.46438 1.19786 0.81490 0.81997 0.88633 1.90698 1.51288 1.55066 1.45536 1.48264 1.42099 1.28973 1.09535 1.23447 0.96391 0.96377 0.91366 1.21904 0.90544 1.00589 1.02889 1.18693 0.95219 0.93631 0.89813 1.21230 0.91871 1.28105 1.13817 0.92684 1.24972 0.98451 0.95379 0.95244 1.69857 1.35132 1.30428 1.17457 0.86564 0.85848 0.77713 0.78031 1.19867 1.21058 1.21077 1.22012 0.91644 1.01286 1.01108 1.21898 0.98279 1.00007 0.81370 1.21493 0.93217 0.98613 0.94936 0.90658 0.91151 0.91030 0.82674 0.82366 0.89423 0.89723 0.75114 0.84215 0.92222 0.87666 0.94582 0.95457 0.93024 0.91862 0.92883 0.91507 0.90133 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 10.04 36.01 0.36 -0.10 16 2 C -0.14 -0.94 5.90 -104.48 -0.62 -1.56 16 3 C 0.10 0.81 10.86 -17.54 -0.19 0.62 16 4 N -0.48 -4.73 10.36 -13.25 -0.14 -4.87 16 5 C 0.11 1.02 10.86 -17.55 -0.19 0.83 16 6 C -0.16 -1.27 5.27 -104.48 -0.55 -1.82 16 7 C 0.16 1.46 5.82 -5.19 -0.03 1.43 16 8 N -0.70 -7.89 5.54 -61.91 -0.34 -8.23 16 9 C 0.51 7.66 7.80 -11.58 -0.09 7.57 16 10 O -0.50 -8.33 13.02 5.50 0.07 -8.26 16 11 C 0.50 8.64 7.76 -11.58 -0.09 8.55 16 12 O -0.55 -9.97 15.91 5.51 0.09 -9.88 16 13 N -0.56 -10.36 2.98 -173.55 -0.52 -10.88 16 14 C 0.04 0.87 6.20 -3.93 -0.02 0.84 16 15 C -0.12 -2.80 5.14 -26.83 -0.14 -2.94 16 16 C 0.04 1.09 2.07 -91.73 -0.19 0.90 16 17 C -0.51 -13.82 8.56 -34.44 -0.29 -14.11 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 20 N -0.89 -24.88 11.31 55.43 0.63 -24.26 16 21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 26 C 0.11 1.93 6.43 -3.71 -0.02 1.90 16 27 C -0.06 -0.41 9.54 -39.28 -0.37 -0.78 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 30 H 0.07 0.22 8.09 -51.93 -0.42 -0.20 16 31 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.41 4.41 7.95 -40.82 -0.32 4.08 16 36 H 0.14 2.71 3.79 -56.98 -0.22 2.50 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.11 2.72 6.03 -51.93 -0.31 2.41 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.08 1.40 7.01 -51.93 -0.36 1.03 16 46 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 377.21 15.07 5.68 5.68 Total: -1.00 -31.05 377.21 -8.89 -39.95 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.67 Total: 4.42 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.68 Total: 0.23 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.37 Total: -48.24 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.16 Total: -18.13 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.05 -8.89 -39.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323525695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.924 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds