Wall clock time and date at job start Tue Mar 31 2020 16:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.50031 * 2 1 4 4 N 1.46505 * 109.46775 * 60.00133 * 3 2 1 5 5 C 1.34773 * 119.99927 * 179.97438 * 4 3 2 6 6 O 1.21724 * 120.00055 * 0.02562 * 5 4 3 7 7 C 1.46488 * 119.99994 * 180.02562 * 5 4 3 8 8 C 1.37788 * 125.86034 * 179.69326 * 7 5 4 9 9 C 1.39927 * 107.68785 * 179.89892 * 8 7 5 10 10 O 1.35125 * 145.13777 * 179.97438 * 9 8 7 11 11 C 1.34379 * 109.62055 * 180.36885 * 10 9 8 12 12 C 1.34458 * 109.45279 * 0.02562 * 11 10 9 13 13 C 1.39137 * 107.40559 * 0.36109 * 9 8 7 14 14 N 1.37109 * 108.10981 * 359.77628 * 13 9 8 15 15 H 0.96994 * 125.74223 * 180.02562 * 14 13 9 16 16 C 1.53048 * 109.49696 * 239.93548 * 2 1 3 17 17 C 1.53103 * 109.50285 * 301.38179 * 16 2 1 18 18 C 1.53188 * 109.33323 * 298.65181 * 17 16 2 19 19 N 1.46930 * 108.77109 * 54.63759 * 18 17 16 20 20 C 1.36943 * 120.62857 * 126.41370 * 19 18 17 21 21 H 1.08003 * 120.00125 * 331.81816 * 20 19 18 22 22 C 1.38809 * 119.99613 * 151.82268 * 20 19 18 23 23 N 1.31617 * 120.00550 * 343.07021 * 22 20 19 24 24 Si 1.86801 * 119.99891 * 163.07444 * 22 20 19 25 25 H 1.48500 * 109.47304 * 89.99389 * 24 22 20 26 26 H 1.48501 * 109.47419 * 209.99633 * 24 22 20 27 27 H 1.48503 * 109.46978 * 330.00021 * 24 22 20 28 28 C 1.46922 * 118.74125 * 306.39016 * 19 18 17 29 29 H 1.08996 * 109.46967 * 59.99911 * 1 2 3 30 30 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46609 * 299.99353 * 1 2 3 32 32 H 1.08995 * 109.47440 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47053 * 300.00436 * 3 2 1 34 34 H 0.96996 * 120.00154 * 359.97438 * 4 3 2 35 35 H 1.08000 * 126.14934 * 0.02562 * 8 7 5 36 36 H 1.08003 * 125.26917 * 179.97438 * 11 10 9 37 37 H 1.07994 * 126.42153 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.45543 * 61.43568 * 16 2 1 39 39 H 1.08997 * 109.45889 * 181.39038 * 16 2 1 40 40 H 1.09006 * 109.48742 * 178.69759 * 17 16 2 41 41 H 1.08999 * 109.48759 * 58.61427 * 17 16 2 42 42 H 1.08997 * 109.58717 * 294.85433 * 18 17 16 43 43 H 1.09002 * 109.70392 * 174.49118 * 18 17 16 44 44 H 0.96999 * 120.00757 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.58590 * 293.82257 * 28 19 18 46 46 H 1.09000 * 109.70689 * 173.46536 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 7 1.5527 2.1330 1.1962 5 6 1.8794 3.4230 1.4098 6 8 2.5794 4.0143 0.6086 7 6 1.3919 4.1136 2.6062 8 6 1.6552 5.4226 2.9463 9 6 1.0030 5.6872 4.1556 10 8 0.7562 6.6203 5.1012 11 6 -0.0199 6.0934 6.0634 12 6 -0.2933 4.8110 5.7660 13 6 0.3521 4.5195 4.5416 14 7 0.5941 3.5623 3.5903 15 1 0.2609 2.6515 3.6054 16 6 2.0408 -0.7228 -1.2486 17 6 1.5030 -2.1561 -1.2655 18 6 2.0140 -2.9041 -0.0302 19 7 1.6516 -2.1379 1.1700 20 6 0.9639 -2.7310 2.1951 21 1 0.3020 -3.5601 1.9928 22 6 1.1176 -2.2664 3.4941 23 7 2.1437 -1.5020 3.8027 24 14 -0.1319 -2.7261 4.8044 25 1 0.2888 -3.9855 5.4694 26 1 -0.2157 -1.6384 5.8119 27 1 -1.4621 -2.9201 4.1734 28 6 2.0414 -0.7236 1.2497 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 3.1307 1.4417 0.0005 33 1 1.6776 1.9562 -0.8899 34 1 0.9945 1.6620 1.8345 35 1 2.2552 6.1196 2.3800 36 1 -0.3692 6.6186 6.9402 37 1 -0.8932 4.1307 6.3522 38 1 1.6988 -0.1952 -2.1389 39 1 3.1305 -0.7440 -1.2356 40 1 1.8480 -2.6634 -2.1665 41 1 0.4132 -2.1358 -1.2536 42 1 3.0979 -3.0044 -0.0861 43 1 1.5574 -3.8928 0.0158 44 1 2.2513 -1.1776 4.7104 45 1 3.1275 -0.6461 1.2981 46 1 1.6028 -0.2710 2.1391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324937393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:00 Heat of formation + Delta-G solvation = 41.790078 kcal Electronic energy + Delta-G solvation = -29073.128148 eV Core-core repulsion = 25158.942619 eV Total energy + Delta-G solvation = -3914.185529 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.94951 -40.17995 -38.97810 -38.02466 -34.91491 -33.32471 -32.41927 -31.57072 -30.55575 -29.97815 -28.52390 -26.63946 -25.78286 -25.36109 -23.26606 -22.19934 -21.65372 -20.77188 -20.56790 -19.96555 -18.54787 -17.91002 -17.12510 -16.72590 -16.29721 -16.02038 -15.35844 -15.29348 -14.86502 -14.41257 -14.08651 -14.00704 -13.74743 -13.59433 -13.47816 -13.23614 -13.20690 -12.86997 -12.79725 -12.34965 -12.27542 -11.79445 -11.70429 -11.41415 -11.06508 -10.94460 -10.74871 -10.50201 -10.28315 -10.21080 -10.13415 -10.08403 -9.90374 -9.64659 -9.47062 -8.90431 -8.63961 -8.59652 -7.89944 -6.76013 -5.91071 -3.33208 0.98320 2.20210 2.46131 2.64093 2.86937 3.24273 3.33323 3.34988 3.38675 3.43380 4.37132 4.52381 4.71602 4.94389 5.04994 5.19341 5.22246 5.34602 5.42093 5.45687 5.46146 5.50546 5.70497 5.74015 5.89396 5.95261 6.00626 6.03047 6.08517 6.17274 6.26356 6.33297 6.35654 6.45350 6.49105 6.55471 6.65149 6.75430 6.79573 6.88151 6.96572 7.09279 7.17941 7.26299 7.45848 7.62982 7.67561 8.24413 8.31945 9.09099 9.72486 10.30274 11.16633 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.004080 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.646145 B = 6861.257534 C = 8902.938702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.136 3.864 4 N -0.713 5.713 5 C 0.587 3.413 6 O -0.531 6.531 7 C 0.014 3.986 8 C -0.085 4.085 9 C -0.041 4.041 10 O -0.170 6.170 11 C 0.006 3.994 12 C -0.199 4.199 13 C 0.012 3.988 14 N -0.527 5.527 15 H 0.424 0.576 16 C -0.095 4.095 17 C -0.135 4.135 18 C 0.143 3.857 19 N -0.589 5.589 20 C -0.248 4.248 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.896 3.104 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.186 3.814 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.401 0.599 35 H 0.160 0.840 36 H 0.211 0.789 37 H 0.153 0.847 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.017 0.983 43 H 0.053 0.947 44 H 0.253 0.747 45 H 0.019 0.981 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 10.587 -1.205 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.106 4.106 3 C 0.013 3.987 4 N -0.364 5.364 5 C 0.373 3.627 6 O -0.408 6.408 7 C -0.099 4.099 8 C -0.113 4.113 9 C -0.093 4.093 10 O -0.068 6.068 11 C -0.062 4.062 12 C -0.221 4.221 13 C -0.102 4.102 14 N -0.131 5.131 15 H 0.262 0.738 16 C -0.133 4.133 17 C -0.174 4.174 18 C 0.016 3.984 19 N -0.311 5.311 20 C -0.377 4.377 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.547 5.547 24 Si 0.725 3.275 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.205 1.205 28 C 0.060 3.940 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.237 0.763 35 H 0.177 0.823 36 H 0.227 0.773 37 H 0.171 0.829 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.037 0.963 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.229 11.161 -1.676 12.053 hybrid contribution -1.132 -1.138 1.379 2.117 sum -5.361 10.023 -0.297 11.371 Atomic orbital electron populations 1.21726 0.94521 1.02718 0.99355 1.21566 0.96462 0.92636 0.99962 1.21459 0.99188 0.92021 0.86045 1.45952 1.53042 1.11146 1.26236 1.16807 0.80442 0.81674 0.83761 1.90845 1.38066 1.66423 1.45511 1.20363 1.02797 0.93597 0.93170 1.19832 1.03893 0.94253 0.93290 1.19274 1.07193 0.87313 0.95523 1.84008 1.57718 1.36889 1.28185 1.23996 0.95453 0.93212 0.93508 1.20597 1.07858 0.97441 0.96187 1.19024 1.05686 0.90242 0.95262 1.41261 1.42094 1.12431 1.17316 0.73754 1.21354 1.00049 0.95994 0.95920 1.22052 1.00972 0.95675 0.98701 1.20941 0.96460 0.94244 0.86716 1.43978 1.65333 1.05525 1.16224 1.19173 1.17565 1.15294 0.85715 0.91722 1.25011 0.97006 1.00715 0.96862 1.70040 1.27284 1.38710 1.18662 0.86405 0.81511 0.77870 0.81694 1.21293 1.21662 1.20493 1.20769 0.96301 0.83850 0.93095 0.94340 0.90835 0.94020 0.91358 0.91787 0.76321 0.82275 0.77264 0.82902 0.93245 0.92439 0.93117 0.91957 0.96500 0.92894 0.93691 0.96318 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 7.81 37.16 0.29 -1.73 16 2 C -0.10 -1.73 0.53 -154.38 -0.08 -1.82 16 3 C 0.14 2.15 4.57 -4.04 -0.02 2.13 16 4 N -0.71 -11.09 4.99 -61.68 -0.31 -11.39 16 5 C 0.59 9.61 7.78 -12.94 -0.10 9.51 16 6 O -0.53 -9.98 16.87 5.17 0.09 -9.90 16 7 C 0.01 0.21 7.03 -81.86 -0.58 -0.37 16 8 C -0.09 -1.25 10.58 -39.11 -0.41 -1.66 16 9 C -0.04 -0.60 8.20 -38.62 -0.32 -0.92 16 10 O -0.17 -2.19 10.68 3.19 0.03 -2.16 16 11 C 0.01 0.06 12.02 29.40 0.35 0.41 16 12 C -0.20 -2.22 10.89 -39.70 -0.43 -2.65 16 13 C 0.01 0.16 8.11 -83.95 -0.68 -0.52 16 14 N -0.53 -7.28 6.08 -7.04 -0.04 -7.32 16 15 H 0.42 5.26 8.16 -40.82 -0.33 4.93 16 16 C -0.10 -1.47 4.72 -26.65 -0.13 -1.60 16 17 C -0.13 -2.16 5.74 -26.58 -0.15 -2.31 16 18 C 0.14 2.80 6.52 -3.71 -0.02 2.77 16 19 N -0.59 -13.44 2.43 -172.32 -0.42 -13.86 16 20 C -0.25 -6.28 9.58 -15.06 -0.14 -6.42 16 21 H 0.07 1.63 7.89 -52.48 -0.41 1.22 16 22 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 23 N -0.90 -24.23 11.19 55.49 0.62 -23.61 16 24 Si 0.90 20.23 29.59 -169.99 -5.03 15.20 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.19 3.95 3.72 -3.71 -0.01 3.93 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.31 5.97 -51.93 -0.31 1.00 16 31 H 0.04 0.65 6.86 -51.93 -0.36 0.30 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 6.09 5.31 -40.82 -0.22 5.87 16 35 H 0.16 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.21 0.99 8.06 -52.48 -0.42 0.56 16 37 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.01 6.33 -51.93 -0.33 0.68 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 44 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.08 1.94 4.97 -51.93 -0.26 1.69 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -30.35 366.88 -8.46 -38.82 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.41 Total: 9.94 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.52 Total: -1.25 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.15 Total: -56.18 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.12 Total: -12.06 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.35 -8.46 -38.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324937393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.608 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds