Wall clock time and date at job start Tue Mar 31 2020 16:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.50031 * 2 1 4 4 N 1.46505 * 109.46775 * 60.00133 * 3 2 1 5 5 C 1.34773 * 119.99927 * 179.97438 * 4 3 2 6 6 O 1.21724 * 120.00055 * 0.02562 * 5 4 3 7 7 C 1.46488 * 119.99994 * 180.02562 * 5 4 3 8 8 C 1.37788 * 125.86034 * 179.69326 * 7 5 4 9 9 C 1.39927 * 107.68785 * 179.89892 * 8 7 5 10 10 O 1.35125 * 145.13777 * 179.97438 * 9 8 7 11 11 C 1.34379 * 109.62055 * 180.36885 * 10 9 8 12 12 C 1.34458 * 109.45279 * 0.02562 * 11 10 9 13 13 C 1.39137 * 107.40559 * 0.36109 * 9 8 7 14 14 N 1.37109 * 108.10981 * 359.77628 * 13 9 8 15 15 H 0.96994 * 125.74223 * 180.02562 * 14 13 9 16 16 C 1.53048 * 109.49696 * 239.93548 * 2 1 3 17 17 C 1.53103 * 109.50285 * 301.38179 * 16 2 1 18 18 C 1.53188 * 109.33323 * 298.65181 * 17 16 2 19 19 N 1.46930 * 108.77109 * 54.63759 * 18 17 16 20 20 C 1.36943 * 120.62857 * 126.41370 * 19 18 17 21 21 H 1.08003 * 120.00125 * 331.81816 * 20 19 18 22 22 C 1.38809 * 119.99613 * 151.82268 * 20 19 18 23 23 N 1.31617 * 120.00550 * 343.07021 * 22 20 19 24 24 Si 1.86801 * 119.99891 * 163.07444 * 22 20 19 25 25 H 1.48500 * 109.47304 * 89.99389 * 24 22 20 26 26 H 1.48501 * 109.47419 * 209.99633 * 24 22 20 27 27 H 1.48503 * 109.46978 * 330.00021 * 24 22 20 28 28 C 1.46922 * 118.74125 * 306.39016 * 19 18 17 29 29 H 1.08996 * 109.46967 * 59.99911 * 1 2 3 30 30 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46609 * 299.99353 * 1 2 3 32 32 H 1.08995 * 109.47440 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47053 * 300.00436 * 3 2 1 34 34 H 0.96996 * 120.00154 * 359.97438 * 4 3 2 35 35 H 1.08000 * 126.14934 * 0.02562 * 8 7 5 36 36 H 1.08003 * 125.26917 * 179.97438 * 11 10 9 37 37 H 1.07994 * 126.42153 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.45543 * 61.43568 * 16 2 1 39 39 H 1.08997 * 109.45889 * 181.39038 * 16 2 1 40 40 H 1.09006 * 109.48742 * 178.69759 * 17 16 2 41 41 H 1.08999 * 109.48759 * 58.61427 * 17 16 2 42 42 H 1.08997 * 109.58717 * 294.85433 * 18 17 16 43 43 H 1.09002 * 109.70392 * 174.49118 * 18 17 16 44 44 H 0.96999 * 120.00757 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.58590 * 293.82257 * 28 19 18 46 46 H 1.09000 * 109.70689 * 173.46536 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 7 1.5527 2.1330 1.1962 5 6 1.8794 3.4230 1.4098 6 8 2.5794 4.0143 0.6086 7 6 1.3919 4.1136 2.6062 8 6 1.6552 5.4226 2.9463 9 6 1.0030 5.6872 4.1556 10 8 0.7562 6.6203 5.1012 11 6 -0.0199 6.0934 6.0634 12 6 -0.2933 4.8110 5.7660 13 6 0.3521 4.5195 4.5416 14 7 0.5941 3.5623 3.5903 15 1 0.2609 2.6515 3.6054 16 6 2.0408 -0.7228 -1.2486 17 6 1.5030 -2.1561 -1.2655 18 6 2.0140 -2.9041 -0.0302 19 7 1.6516 -2.1379 1.1700 20 6 0.9639 -2.7310 2.1951 21 1 0.3020 -3.5601 1.9928 22 6 1.1176 -2.2664 3.4941 23 7 2.1437 -1.5020 3.8027 24 14 -0.1319 -2.7261 4.8044 25 1 0.2888 -3.9855 5.4694 26 1 -0.2157 -1.6384 5.8119 27 1 -1.4621 -2.9201 4.1734 28 6 2.0414 -0.7236 1.2497 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5137 0.8900 32 1 3.1307 1.4417 0.0005 33 1 1.6776 1.9562 -0.8899 34 1 0.9945 1.6620 1.8345 35 1 2.2552 6.1196 2.3800 36 1 -0.3692 6.6186 6.9402 37 1 -0.8932 4.1307 6.3522 38 1 1.6988 -0.1952 -2.1389 39 1 3.1305 -0.7440 -1.2356 40 1 1.8480 -2.6634 -2.1665 41 1 0.4132 -2.1358 -1.2536 42 1 3.0979 -3.0044 -0.0861 43 1 1.5574 -3.8928 0.0158 44 1 2.2513 -1.1776 4.7104 45 1 3.1275 -0.6461 1.2981 46 1 1.6028 -0.2710 2.1391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324937393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:59 Heat of formation + Delta-G solvation = 23.314070 kcal Electronic energy + Delta-G solvation = -29073.929328 eV Core-core repulsion = 25158.942619 eV Total energy + Delta-G solvation = -3914.986709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.93173 -41.39479 -40.26710 -39.34707 -36.40987 -34.96075 -33.37828 -33.06378 -31.74959 -31.54550 -29.61486 -27.99139 -27.35556 -26.91334 -24.47715 -23.76337 -22.68293 -22.08987 -21.72277 -21.19390 -19.78494 -19.23877 -18.52632 -18.12677 -17.31560 -17.27209 -16.79633 -16.49939 -16.37893 -15.83179 -15.44693 -15.37972 -15.21783 -14.83114 -14.73264 -14.51315 -14.49441 -14.26536 -13.80947 -13.74305 -13.69606 -13.13785 -13.04399 -12.80431 -12.74683 -12.58840 -12.31498 -12.16194 -11.87323 -11.74542 -11.49210 -11.41451 -11.10205 -11.09841 -10.98512 -10.53477 -10.21275 -9.68986 -8.91326 -8.62663 -7.85527 -5.30238 -0.08038 1.18145 1.43426 1.46233 1.47963 1.55560 1.66039 1.79074 2.19173 2.27468 2.50732 3.26862 3.55942 3.57842 3.73025 3.93027 3.93949 4.01680 4.03440 4.27885 4.36437 4.44984 4.50888 4.53917 4.66593 4.73199 4.73570 4.75330 4.80042 4.98816 5.01091 5.02666 5.10545 5.17605 5.21150 5.30082 5.37970 5.41122 5.43759 5.47733 5.54709 5.61475 5.70666 5.76975 6.09926 6.22582 6.38262 6.39996 6.96017 7.16918 7.88053 8.40793 9.19386 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.004080 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.646145 B = 6861.257534 C = 8902.938702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.092 4.092 3 C 0.141 3.859 4 N -0.709 5.709 5 C 0.590 3.410 6 O -0.561 6.561 7 C -0.009 4.009 8 C -0.086 4.086 9 C -0.071 4.071 10 O -0.181 6.181 11 C 0.034 3.966 12 C -0.223 4.223 13 C 0.007 3.993 14 N -0.526 5.526 15 H 0.427 0.573 16 C -0.095 4.095 17 C -0.123 4.123 18 C 0.135 3.865 19 N -0.604 5.604 20 C -0.254 4.254 21 H 0.063 0.937 22 C -0.042 4.042 23 N -0.931 5.931 24 Si 0.955 3.045 25 H -0.293 1.293 26 H -0.290 1.290 27 H -0.271 1.271 28 C 0.197 3.803 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.402 0.598 35 H 0.165 0.835 36 H 0.263 0.737 37 H 0.176 0.824 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.006 0.994 43 H 0.051 0.949 44 H 0.248 0.752 45 H -0.019 1.019 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 11.359 -1.193 13.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.094 4.094 3 C 0.017 3.983 4 N -0.360 5.360 5 C 0.378 3.622 6 O -0.440 6.440 7 C -0.122 4.122 8 C -0.114 4.114 9 C -0.122 4.122 10 O -0.079 6.079 11 C -0.033 4.033 12 C -0.244 4.244 13 C -0.107 4.107 14 N -0.130 5.130 15 H 0.267 0.733 16 C -0.133 4.133 17 C -0.162 4.162 18 C 0.010 3.990 19 N -0.326 5.326 20 C -0.385 4.385 21 H 0.081 0.919 22 C -0.238 4.238 23 N -0.577 5.577 24 Si 0.783 3.217 25 H -0.220 1.220 26 H -0.216 1.216 27 H -0.196 1.196 28 C 0.071 3.929 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.239 0.761 35 H 0.183 0.817 36 H 0.279 0.721 37 H 0.193 0.807 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.024 0.976 43 H 0.069 0.931 44 H 0.057 0.943 45 H -0.001 1.001 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.077 11.907 -1.696 13.475 hybrid contribution -0.550 -1.383 1.469 2.091 sum -6.627 10.523 -0.227 12.438 Atomic orbital electron populations 1.21653 0.93484 1.01979 1.00560 1.21365 0.97076 0.92604 0.98319 1.21415 0.98502 0.91580 0.86773 1.45922 1.52817 1.10979 1.26236 1.16923 0.79867 0.81608 0.83826 1.90815 1.39501 1.67036 1.46660 1.20135 1.04532 0.93936 0.93557 1.20003 1.03523 0.94261 0.93617 1.19367 1.08385 0.88224 0.96221 1.84022 1.58427 1.36960 1.28511 1.25081 0.92281 0.92830 0.93064 1.21017 1.08984 0.98711 0.95661 1.19607 1.05342 0.89899 0.95899 1.41217 1.41902 1.12654 1.17182 0.73341 1.21390 0.99826 0.95842 0.96241 1.21926 1.00991 0.95614 0.97642 1.21113 0.95959 0.94631 0.87312 1.44222 1.65289 1.06438 1.16687 1.19439 1.17381 1.15080 0.86583 0.91915 1.25616 0.98431 1.01195 0.98524 1.70193 1.28844 1.40074 1.18582 0.85481 0.79851 0.76989 0.79348 1.22000 1.21644 1.19560 1.20544 0.93857 0.83744 0.94722 0.91670 0.92446 0.94305 0.92622 0.90018 0.76140 0.81704 0.72131 0.80706 0.90077 0.92930 0.90218 0.91678 0.97553 0.93072 0.94296 1.00076 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 7.81 71.98 0.56 -3.08 16 2 C -0.09 -2.99 0.53 -52.10 -0.03 -3.02 16 3 C 0.14 4.39 4.57 86.38 0.39 4.79 16 4 N -0.71 -22.41 4.99 -467.26 -2.33 -24.74 16 5 C 0.59 19.78 7.78 86.39 0.67 20.45 16 6 O -0.56 -21.49 16.87 -4.43 -0.07 -21.56 16 7 C -0.01 -0.28 7.03 40.19 0.28 0.00 16 8 C -0.09 -2.58 10.58 22.57 0.24 -2.34 16 9 C -0.07 -2.03 8.20 22.90 0.19 -1.84 16 10 O -0.18 -4.36 10.68 -11.50 -0.12 -4.49 16 11 C 0.03 0.55 12.02 66.95 0.80 1.35 16 12 C -0.22 -4.45 10.89 22.20 0.24 -4.21 16 13 C 0.01 0.19 8.11 39.32 0.32 0.51 16 14 N -0.53 -14.68 6.08 -176.18 -1.07 -15.75 16 15 H 0.43 10.86 8.16 -92.71 -0.76 10.10 16 16 C -0.09 -2.75 4.72 30.65 0.14 -2.60 16 17 C -0.12 -3.67 5.74 30.69 0.18 -3.49 16 18 C 0.14 5.28 6.52 86.36 0.56 5.84 16 19 N -0.60 -27.97 2.43 -699.09 -1.70 -29.67 16 20 C -0.25 -13.04 9.58 84.03 0.81 -12.24 16 21 H 0.06 3.18 7.89 -2.91 -0.02 3.16 16 22 C -0.04 -2.19 4.92 84.86 0.42 -1.77 16 23 N -0.93 -51.39 11.19 21.65 0.24 -51.15 16 24 Si 0.95 41.93 29.59 68.60 2.03 43.96 16 25 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 28 C 0.20 8.59 3.72 86.36 0.32 8.92 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.96 5.97 -2.39 -0.01 1.94 16 31 H 0.04 1.18 6.86 -2.39 -0.02 1.17 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 33 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.40 12.53 5.31 -92.71 -0.49 12.04 16 35 H 0.17 4.52 8.06 -2.91 -0.02 4.49 16 36 H 0.26 1.10 8.06 -2.91 -0.02 1.07 16 37 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.06 1.94 6.33 -2.39 -0.02 1.93 16 42 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 44 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 45 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 46 H 0.06 3.04 4.97 -2.39 -0.01 3.03 16 Total: -1.00 -67.42 366.88 2.85 -64.57 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: -0.22 Total: 31.56 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 6.10 Total: 7.27 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -4.86 Total: -121.30 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.20 Total: -26.05 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -67.42 2.85 -64.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324937393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.880 kcal (2) G-P(sol) polarization free energy of solvation -67.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds