Wall clock time and date at job start Tue Mar 31 2020 16:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38232 * 120.41807 * 2 1 4 4 N 1.31852 * 120.75898 * 180.02562 * 3 2 1 5 5 C 1.31879 * 121.73033 * 359.97438 * 4 3 2 6 6 C 1.38183 * 120.76571 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.42036 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.47256 * 90.00334 * 7 6 5 9 9 C 1.34782 * 120.00166 * 180.02562 * 8 7 6 10 10 O 1.21350 * 119.99528 * 359.97438 * 9 8 7 11 11 C 1.49446 * 120.00084 * 179.97438 * 9 8 7 12 12 O 1.21356 * 119.99837 * 353.38299 * 11 9 8 13 13 N 1.34776 * 120.00037 * 173.38758 * 11 9 8 14 14 C 1.46926 * 120.62820 * 353.06527 * 13 11 9 15 15 C 1.53196 * 108.76922 * 126.41895 * 14 13 11 16 16 C 1.53036 * 109.34112 * 54.62209 * 15 14 13 17 17 C 1.53043 * 109.53413 * 298.67856 * 16 15 14 18 18 H 1.09001 * 109.50042 * 301.34757 * 17 16 15 19 19 C 1.50704 * 109.49240 * 181.28640 * 17 16 15 20 20 H 1.07995 * 120.00346 * 0.06542 * 19 17 16 21 21 C 1.37886 * 119.99595 * 180.34521 * 19 17 16 22 22 N 1.31514 * 119.99864 * 179.72759 * 21 19 17 23 23 Si 1.86795 * 120.00150 * 359.71814 * 21 19 17 24 24 H 1.48501 * 109.46845 * 90.00540 * 23 21 19 25 25 H 1.48496 * 109.47474 * 210.00464 * 23 21 19 26 26 H 1.48504 * 109.47401 * 330.00581 * 23 21 19 27 27 C 1.46931 * 120.62929 * 173.09459 * 13 11 9 28 28 C 1.38625 * 120.41968 * 180.25704 * 2 1 3 29 29 H 1.08998 * 109.47162 * 89.99887 * 1 2 3 30 30 H 1.08991 * 109.47090 * 210.00118 * 1 2 3 31 31 H 1.09004 * 109.46755 * 329.99711 * 1 2 3 32 32 H 1.08001 * 119.61852 * 0.04403 * 3 2 1 33 33 H 1.07998 * 119.62020 * 180.02562 * 5 4 3 34 34 H 1.09007 * 109.47437 * 330.00121 * 7 6 5 35 35 H 1.09010 * 109.47462 * 210.00144 * 7 6 5 36 36 H 0.96996 * 120.00059 * 359.97438 * 8 7 6 37 37 H 1.09002 * 109.58673 * 246.20018 * 14 13 11 38 38 H 1.08995 * 109.58988 * 6.48860 * 14 13 11 39 39 H 1.09005 * 109.49633 * 174.58725 * 15 14 13 40 40 H 1.09002 * 109.49831 * 294.68233 * 15 14 13 41 41 H 1.09003 * 109.48723 * 178.64696 * 16 15 14 42 42 H 1.08994 * 109.43652 * 58.68064 * 16 15 14 43 43 H 0.97002 * 120.00070 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.58264 * 113.79778 * 27 13 11 45 45 H 1.08999 * 109.70240 * 353.44052 * 27 13 11 46 46 H 1.08002 * 120.78652 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0824 -0.0005 6 6 3.5948 -1.1471 0.0005 7 6 4.4027 -2.4192 -0.0001 8 7 4.6660 -2.8311 1.3809 9 6 5.3771 -3.9494 1.6267 10 8 5.7987 -4.6153 0.7039 11 6 5.6462 -4.3694 3.0355 12 8 5.3302 -3.6440 3.9557 13 7 6.2399 -5.5535 3.2840 14 6 6.4910 -6.5080 2.1955 15 6 7.9743 -6.8909 2.2081 16 6 8.3523 -7.4086 3.5978 17 6 8.1291 -6.3042 4.6335 18 1 8.7315 -5.4340 4.3730 19 6 8.5314 -6.8047 5.9969 20 1 8.9097 -7.8095 6.1133 21 6 8.4112 -5.9815 7.0965 22 7 8.7573 -6.4200 8.2871 23 14 7.7570 -4.2435 6.8951 24 1 6.2800 -4.2497 7.0487 25 1 8.3586 -3.3650 7.9302 26 1 8.1123 -3.7340 5.5462 27 6 6.6477 -5.9147 4.6486 28 6 2.2090 -1.1954 -0.0054 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6675 2.1277 0.0007 33 1 5.3047 0.1286 -0.0005 34 1 5.3482 -2.2490 -0.5151 35 1 3.8456 -3.2032 -0.5131 36 1 4.3293 -2.2987 2.1184 37 1 5.8821 -7.3998 2.3439 38 1 6.2383 -6.0478 1.2404 39 1 8.1551 -7.6704 1.4679 40 1 8.5781 -6.0152 1.9699 41 1 9.4014 -7.7043 3.6026 42 1 7.7314 -8.2695 3.8454 43 1 8.6730 -5.8408 9.0607 44 1 6.0515 -6.7582 4.9968 45 1 6.5003 -5.0637 5.3135 46 1 1.6888 -2.1419 -0.0092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328056428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:19 Heat of formation + Delta-G solvation = -19.047734 kcal Electronic energy + Delta-G solvation = -28120.351402 eV Core-core repulsion = 24203.527748 eV Total energy + Delta-G solvation = -3916.823654 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02826 -40.55428 -38.63848 -37.19604 -35.75740 -34.06377 -33.35867 -32.44045 -31.92428 -30.52038 -27.86812 -27.58868 -25.69217 -25.16891 -23.66595 -22.75164 -21.99581 -21.53784 -20.38571 -19.04089 -17.67399 -17.38370 -17.16585 -16.93132 -16.70247 -15.99499 -15.67791 -15.27367 -14.72155 -14.51794 -14.34716 -14.20585 -14.09403 -13.65375 -13.56999 -13.50499 -13.24017 -13.16925 -13.05625 -12.88577 -12.76148 -12.48278 -12.15621 -11.93755 -11.71745 -11.09467 -10.92793 -10.52104 -10.37328 -10.22645 -10.12019 -9.91168 -9.78510 -9.54751 -9.48975 -9.34760 -9.16145 -8.73146 -8.63365 -8.18636 -6.13428 -4.14639 0.51869 0.78630 1.49258 2.45524 3.30314 3.31875 3.34562 3.41359 3.49572 3.73479 3.90163 4.17965 4.25518 4.38186 4.41920 4.47805 4.50835 4.66799 4.88739 5.08278 5.16094 5.18443 5.24102 5.32996 5.41250 5.50327 5.51254 5.63250 5.71275 5.76097 5.80210 6.02218 6.10992 6.14363 6.21778 6.37836 6.44239 6.51207 6.58076 6.75127 6.79647 6.95404 7.12682 7.40401 7.51700 7.60920 7.68107 7.79611 8.17996 8.46500 8.90434 9.47844 10.98668 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017259 B = 0.002795 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.973593 B =10017.072729 C =10974.494054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.140 4.140 3 C 0.106 3.894 4 N -0.481 5.481 5 C 0.115 3.885 6 C -0.158 4.158 7 C 0.164 3.836 8 N -0.701 5.701 9 C 0.515 3.485 10 O -0.508 6.508 11 C 0.495 3.505 12 O -0.532 6.532 13 N -0.567 5.567 14 C 0.051 3.949 15 C -0.130 4.130 16 C -0.103 4.103 17 C 0.005 3.995 18 H 0.031 0.969 19 C -0.515 4.515 20 H 0.079 0.921 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.878 3.122 24 H -0.272 1.272 25 H -0.294 1.294 26 H -0.266 1.266 27 C 0.098 3.902 28 C -0.056 4.056 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.414 0.586 37 H 0.061 0.939 38 H 0.147 0.853 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.265 0.735 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.424 10.414 -20.589 27.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.142 4.142 3 C -0.052 4.052 4 N -0.188 5.188 5 C -0.043 4.043 6 C -0.161 4.161 7 C 0.041 3.959 8 N -0.354 5.354 9 C 0.298 3.702 10 O -0.385 6.385 11 C 0.276 3.724 12 O -0.410 6.410 13 N -0.299 5.299 14 C -0.070 4.070 15 C -0.169 4.169 16 C -0.141 4.141 17 C -0.014 4.014 18 H 0.049 0.951 19 C -0.553 4.553 20 H 0.097 0.903 21 C -0.130 4.130 22 N -0.532 5.532 23 Si 0.708 3.292 24 H -0.198 1.198 25 H -0.221 1.221 26 H -0.191 1.191 27 C -0.022 4.022 28 C -0.082 4.082 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.174 0.826 33 H 0.176 0.824 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.251 0.749 37 H 0.079 0.921 38 H 0.163 0.837 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.815 11.146 -20.555 27.681 hybrid contribution -0.920 0.328 0.538 1.115 sum -15.735 11.474 -20.017 27.927 Atomic orbital electron populations 1.20743 0.89867 1.03473 1.02765 1.20987 0.97873 0.94004 1.01328 1.22799 0.89982 0.97658 0.94729 1.67757 1.08345 1.31003 1.11710 1.22784 1.00612 0.86932 0.93941 1.20855 0.94658 0.96232 1.04337 1.20203 0.99673 0.92830 0.83187 1.45900 1.54213 1.26121 1.09195 1.20568 0.78241 0.81066 0.90320 1.90326 1.50434 1.51439 1.46327 1.19863 0.80746 0.83265 0.88537 1.90757 1.51765 1.53063 1.45399 1.48383 1.54933 1.15231 1.11324 1.23164 0.97208 0.93102 0.93566 1.21900 0.95484 1.00818 0.98655 1.21483 1.00960 0.98748 0.92893 1.19497 0.90180 0.95454 0.96291 0.95110 1.20966 1.43382 1.01759 0.89182 0.90315 1.25054 0.94617 0.98103 0.95242 1.69886 1.47640 1.36793 0.98862 0.87006 0.79365 0.84918 0.77952 1.19802 1.22106 1.19062 1.22835 0.99193 1.00649 0.79542 1.21488 0.93185 0.98634 0.94935 0.90722 0.91082 0.90954 0.82617 0.82414 0.89482 0.89685 0.74911 0.92114 0.83679 0.91621 0.92173 0.92214 0.92544 0.92462 0.90855 0.90338 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 10.04 36.01 0.36 -0.11 16 2 C -0.14 -0.95 5.90 -104.48 -0.62 -1.57 16 3 C 0.11 0.83 10.86 -17.55 -0.19 0.64 16 4 N -0.48 -4.77 10.36 -13.25 -0.14 -4.91 16 5 C 0.11 1.02 10.86 -17.55 -0.19 0.83 16 6 C -0.16 -1.26 5.27 -104.48 -0.55 -1.81 16 7 C 0.16 1.38 5.83 -5.20 -0.03 1.35 16 8 N -0.70 -7.88 5.54 -61.90 -0.34 -8.22 16 9 C 0.52 7.52 7.78 -11.58 -0.09 7.43 16 10 O -0.51 -7.61 13.10 5.50 0.07 -7.54 16 11 C 0.49 9.16 7.74 -11.59 -0.09 9.07 16 12 O -0.53 -11.23 15.95 5.49 0.09 -11.15 16 13 N -0.57 -10.92 2.97 -173.28 -0.51 -11.43 16 14 C 0.05 0.81 6.27 -3.71 -0.02 0.79 16 15 C -0.13 -2.11 6.08 -26.61 -0.16 -2.28 16 16 C -0.10 -2.00 5.11 -26.69 -0.14 -2.14 16 17 C 0.01 0.12 1.84 -91.65 -0.17 -0.04 16 18 H 0.03 0.77 7.21 -51.93 -0.37 0.40 16 19 C -0.51 -14.28 9.15 -34.44 -0.31 -14.59 16 20 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 21 C 0.07 2.10 5.45 -17.82 -0.10 2.01 16 22 N -0.89 -27.29 13.96 55.43 0.77 -26.51 16 23 Si 0.88 22.94 24.32 -169.99 -4.13 18.80 16 24 H -0.27 -7.10 6.91 56.52 0.39 -6.71 16 25 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 26 H -0.27 -6.91 6.54 56.52 0.37 -6.54 16 27 C 0.10 2.21 5.09 -3.71 -0.02 2.19 16 28 C -0.06 -0.40 9.54 -39.28 -0.37 -0.77 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 31 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 32 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.09 0.70 8.09 -51.93 -0.42 0.28 16 35 H 0.08 0.65 8.09 -51.92 -0.42 0.23 16 36 H 0.41 4.66 7.95 -40.82 -0.32 4.33 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.15 2.23 3.78 -56.75 -0.21 2.01 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 45 H 0.08 1.96 2.36 -51.93 -0.12 1.83 16 46 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 370.69 15.07 5.59 5.59 Total: -1.00 -33.57 370.69 -7.84 -41.42 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.54 Total: 2.96 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.69 Total: 0.99 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.22 Total: -51.07 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.16 Total: -18.69 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.13 Total: 18.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.57 -7.84 -41.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328056428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.370 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds