Wall clock time and date at job start Tue Mar 31 2020 16:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38232 * 120.41807 * 2 1 4 4 N 1.31852 * 120.75898 * 180.02562 * 3 2 1 5 5 C 1.31879 * 121.73033 * 359.97438 * 4 3 2 6 6 C 1.38183 * 120.76571 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.42036 * 179.97438 * 6 5 4 8 8 N 1.46502 * 109.47256 * 90.00334 * 7 6 5 9 9 C 1.34782 * 120.00166 * 180.02562 * 8 7 6 10 10 O 1.21350 * 119.99528 * 359.97438 * 9 8 7 11 11 C 1.49446 * 120.00084 * 179.97438 * 9 8 7 12 12 O 1.21356 * 119.99837 * 353.38299 * 11 9 8 13 13 N 1.34776 * 120.00037 * 173.38758 * 11 9 8 14 14 C 1.46926 * 120.62820 * 353.06527 * 13 11 9 15 15 C 1.53196 * 108.76922 * 126.41895 * 14 13 11 16 16 C 1.53036 * 109.34112 * 54.62209 * 15 14 13 17 17 C 1.53043 * 109.53413 * 298.67856 * 16 15 14 18 18 H 1.09001 * 109.50042 * 301.34757 * 17 16 15 19 19 C 1.50704 * 109.49240 * 181.28640 * 17 16 15 20 20 H 1.07995 * 120.00346 * 0.06542 * 19 17 16 21 21 C 1.37886 * 119.99595 * 180.34521 * 19 17 16 22 22 N 1.31514 * 119.99864 * 179.72759 * 21 19 17 23 23 Si 1.86795 * 120.00150 * 359.71814 * 21 19 17 24 24 H 1.48501 * 109.46845 * 90.00540 * 23 21 19 25 25 H 1.48496 * 109.47474 * 210.00464 * 23 21 19 26 26 H 1.48504 * 109.47401 * 330.00581 * 23 21 19 27 27 C 1.46931 * 120.62929 * 173.09459 * 13 11 9 28 28 C 1.38625 * 120.41968 * 180.25704 * 2 1 3 29 29 H 1.08998 * 109.47162 * 89.99887 * 1 2 3 30 30 H 1.08991 * 109.47090 * 210.00118 * 1 2 3 31 31 H 1.09004 * 109.46755 * 329.99711 * 1 2 3 32 32 H 1.08001 * 119.61852 * 0.04403 * 3 2 1 33 33 H 1.07998 * 119.62020 * 180.02562 * 5 4 3 34 34 H 1.09007 * 109.47437 * 330.00121 * 7 6 5 35 35 H 1.09010 * 109.47462 * 210.00144 * 7 6 5 36 36 H 0.96996 * 120.00059 * 359.97438 * 8 7 6 37 37 H 1.09002 * 109.58673 * 246.20018 * 14 13 11 38 38 H 1.08995 * 109.58988 * 6.48860 * 14 13 11 39 39 H 1.09005 * 109.49633 * 174.58725 * 15 14 13 40 40 H 1.09002 * 109.49831 * 294.68233 * 15 14 13 41 41 H 1.09003 * 109.48723 * 178.64696 * 16 15 14 42 42 H 1.08994 * 109.43652 * 58.68064 * 16 15 14 43 43 H 0.97002 * 120.00070 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.58264 * 113.79778 * 27 13 11 45 45 H 1.08999 * 109.70240 * 353.44052 * 27 13 11 46 46 H 1.08002 * 120.78652 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0824 -0.0005 6 6 3.5948 -1.1471 0.0005 7 6 4.4027 -2.4192 -0.0001 8 7 4.6660 -2.8311 1.3809 9 6 5.3771 -3.9494 1.6267 10 8 5.7987 -4.6153 0.7039 11 6 5.6462 -4.3694 3.0355 12 8 5.3302 -3.6440 3.9557 13 7 6.2399 -5.5535 3.2840 14 6 6.4910 -6.5080 2.1955 15 6 7.9743 -6.8909 2.2081 16 6 8.3523 -7.4086 3.5978 17 6 8.1291 -6.3042 4.6335 18 1 8.7315 -5.4340 4.3730 19 6 8.5314 -6.8047 5.9969 20 1 8.9097 -7.8095 6.1133 21 6 8.4112 -5.9815 7.0965 22 7 8.7573 -6.4200 8.2871 23 14 7.7570 -4.2435 6.8951 24 1 6.2800 -4.2497 7.0487 25 1 8.3586 -3.3650 7.9302 26 1 8.1123 -3.7340 5.5462 27 6 6.6477 -5.9147 4.6486 28 6 2.2090 -1.1954 -0.0054 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6675 2.1277 0.0007 33 1 5.3047 0.1286 -0.0005 34 1 5.3482 -2.2490 -0.5151 35 1 3.8456 -3.2032 -0.5131 36 1 4.3293 -2.2987 2.1184 37 1 5.8821 -7.3998 2.3439 38 1 6.2383 -6.0478 1.2404 39 1 8.1551 -7.6704 1.4679 40 1 8.5781 -6.0152 1.9699 41 1 9.4014 -7.7043 3.6026 42 1 7.7314 -8.2695 3.8454 43 1 8.6730 -5.8408 9.0607 44 1 6.0515 -6.7582 4.9968 45 1 6.5003 -5.0637 5.3135 46 1 1.6888 -2.1419 -0.0092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328056428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:18 Heat of formation + Delta-G solvation = -42.963869 kcal Electronic energy + Delta-G solvation = -28121.388483 eV Core-core repulsion = 24203.527748 eV Total energy + Delta-G solvation = -3917.860736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.14813 -41.32529 -39.93820 -38.72118 -36.70558 -35.23360 -34.56706 -33.68523 -33.15808 -32.26882 -28.64246 -28.21589 -27.20792 -26.79492 -24.43621 -23.84544 -23.60303 -22.20407 -21.70219 -20.59445 -19.12150 -18.68151 -18.25365 -17.95987 -17.77998 -17.18580 -16.92926 -16.41599 -16.28247 -15.76402 -15.52725 -15.26519 -15.16722 -14.96025 -14.81568 -14.62725 -14.27473 -14.15800 -14.03181 -13.84509 -13.66623 -13.59322 -13.31535 -13.25029 -13.04580 -12.55027 -12.44604 -12.35028 -12.13283 -11.75597 -11.62792 -11.35114 -11.09707 -10.82848 -10.80959 -10.57884 -10.37777 -10.12436 -9.85132 -9.74727 -8.40232 -6.42793 -0.07847 0.21603 0.23403 1.22106 1.25169 1.30731 1.36219 2.01644 2.19247 2.41255 2.79588 2.96001 3.20632 3.33034 3.62859 3.75485 3.94676 3.96437 3.98319 4.13631 4.17143 4.19642 4.37970 4.38601 4.47873 4.54793 4.58502 4.71012 4.72348 4.77428 4.82306 4.85192 4.91367 5.06551 5.14331 5.17702 5.20524 5.26522 5.27852 5.36673 5.49371 5.57562 5.63601 5.69434 5.87676 6.22575 6.25047 6.58848 6.66819 6.81797 6.93536 7.22458 8.75812 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017259 B = 0.002795 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.973593 B =10017.072729 C =10974.494054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.139 4.139 3 C 0.094 3.906 4 N -0.511 5.511 5 C 0.099 3.901 6 C -0.159 4.159 7 C 0.167 3.833 8 N -0.684 5.684 9 C 0.526 3.474 10 O -0.510 6.510 11 C 0.487 3.513 12 O -0.564 6.564 13 N -0.574 5.574 14 C 0.050 3.950 15 C -0.122 4.122 16 C -0.100 4.100 17 C 0.005 3.995 18 H 0.016 0.984 19 C -0.512 4.512 20 H 0.051 0.949 21 C 0.027 3.973 22 N -0.936 5.936 23 Si 0.935 3.065 24 H -0.274 1.274 25 H -0.291 1.291 26 H -0.267 1.267 27 C 0.104 3.896 28 C -0.060 4.060 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.174 0.826 33 H 0.163 0.837 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.415 0.585 37 H 0.077 0.923 38 H 0.162 0.838 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.268 0.732 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.224 10.850 -23.445 31.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.141 4.141 3 C -0.063 4.063 4 N -0.219 5.219 5 C -0.058 4.058 6 C -0.161 4.161 7 C 0.045 3.955 8 N -0.336 5.336 9 C 0.307 3.693 10 O -0.388 6.388 11 C 0.270 3.730 12 O -0.444 6.444 13 N -0.305 5.305 14 C -0.070 4.070 15 C -0.160 4.160 16 C -0.137 4.137 17 C -0.015 4.015 18 H 0.034 0.966 19 C -0.550 4.550 20 H 0.069 0.931 21 C -0.171 4.171 22 N -0.576 5.576 23 Si 0.764 3.236 24 H -0.201 1.201 25 H -0.218 1.218 26 H -0.192 1.192 27 C -0.018 4.018 28 C -0.086 4.086 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.192 0.808 33 H 0.180 0.820 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.252 0.748 37 H 0.095 0.905 38 H 0.178 0.822 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.629 11.595 -23.460 31.005 hybrid contribution -0.403 0.197 1.382 1.453 sum -17.032 11.792 -22.078 30.275 Atomic orbital electron populations 1.20800 0.87962 1.04208 1.03693 1.21274 0.99238 0.93479 1.00100 1.23202 0.89613 0.99061 0.94449 1.67742 1.09529 1.31740 1.12880 1.22947 1.01063 0.87269 0.94514 1.20767 0.95030 0.95529 1.04805 1.20377 1.00416 0.93416 0.81262 1.45892 1.52433 1.24612 1.10687 1.19697 0.79272 0.82160 0.88128 1.90306 1.51126 1.51956 1.45432 1.20596 0.79731 0.82452 0.90249 1.90732 1.52885 1.53809 1.46965 1.48400 1.55191 1.16360 1.10564 1.23431 0.97305 0.93244 0.92987 1.21862 0.95421 1.01615 0.97095 1.21425 1.01101 0.97404 0.93818 1.19425 0.90718 0.96189 0.95154 0.96633 1.21273 1.42029 1.00425 0.91308 0.93069 1.25660 0.95246 1.01108 0.95122 1.69985 1.49756 1.38174 0.99676 0.86096 0.78518 0.81465 0.77568 1.20068 1.21840 1.19229 1.22347 0.98307 0.99585 0.81525 1.21784 0.92973 0.99645 0.94218 0.89579 0.90532 0.90077 0.80847 0.81991 0.88778 0.88104 0.74807 0.90455 0.82198 0.87895 0.92756 0.92425 0.92151 0.92270 0.90908 0.92766 0.82638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.04 71.24 0.72 0.08 16 2 C -0.14 -1.58 5.90 -19.77 -0.12 -1.70 16 3 C 0.09 1.33 10.86 84.69 0.92 2.25 16 4 N -0.51 -9.69 10.36 -195.84 -2.03 -11.72 16 5 C 0.10 1.65 10.86 84.67 0.92 2.57 16 6 C -0.16 -2.20 5.27 -19.78 -0.10 -2.31 16 7 C 0.17 2.34 5.83 85.63 0.50 2.84 16 8 N -0.68 -13.77 5.54 -468.12 -2.59 -16.37 16 9 C 0.53 14.08 7.78 87.27 0.68 14.76 16 10 O -0.51 -13.62 13.10 -3.25 -0.04 -13.66 16 11 C 0.49 17.36 7.74 87.27 0.68 18.03 16 12 O -0.56 -23.49 15.95 -3.26 -0.05 -23.54 16 13 N -0.57 -21.22 2.97 -820.48 -2.44 -23.66 16 14 C 0.05 1.45 6.27 86.36 0.54 1.99 16 15 C -0.12 -3.59 6.08 30.67 0.19 -3.41 16 16 C -0.10 -3.74 5.11 30.62 0.16 -3.59 16 17 C 0.00 0.22 1.84 -11.46 -0.02 0.20 16 18 H 0.02 0.78 7.21 -2.39 -0.02 0.76 16 19 C -0.51 -29.02 9.15 25.60 0.23 -28.79 16 20 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 21 C 0.03 1.63 5.45 84.66 0.46 2.09 16 22 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 23 Si 0.93 48.76 24.32 68.60 1.67 50.43 16 24 H -0.27 -14.28 6.91 99.48 0.69 -13.59 16 25 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 26 H -0.27 -13.82 6.54 99.48 0.65 -13.17 16 27 C 0.10 4.66 5.09 86.36 0.44 5.10 16 28 C -0.06 -0.71 9.54 22.47 0.21 -0.49 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.08 0.38 8.10 -2.39 -0.02 0.37 16 31 H 0.08 0.34 8.09 -2.38 -0.02 0.32 16 32 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.09 1.26 8.09 -2.38 -0.02 1.24 16 35 H 0.10 1.18 8.09 -2.38 -0.02 1.16 16 36 H 0.42 8.57 7.95 -92.71 -0.74 7.83 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.16 4.32 3.78 -78.74 -0.30 4.02 16 39 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 44 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.05 2.70 2.36 -2.39 -0.01 2.70 16 46 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -73.81 370.69 1.12 -72.69 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -0.09 Total: 14.47 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 6.40 Total: 9.65 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -6.76 Total: -110.03 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.09 Total: -37.20 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 1.67 Total: 50.43 kcal Total: -73.81 1.12 -72.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328056428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.721 kcal (2) G-P(sol) polarization free energy of solvation -73.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds