Wall clock time and date at job start Tue Mar 31 2020 17:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38677 * 120.78531 * 2 1 4 4 C 1.38187 * 119.15813 * 180.02562 * 3 2 1 5 5 N 1.31880 * 120.76806 * 359.97438 * 4 3 2 6 6 C 1.31851 * 121.72445 * 359.77008 * 5 4 3 7 7 C 1.38229 * 120.76413 * 0.49320 * 6 5 4 8 8 C 1.50702 * 120.41950 * 179.77792 * 7 6 5 9 9 H 1.09000 * 109.47345 * 144.72049 * 8 7 6 10 10 C 1.53002 * 109.46965 * 264.72188 * 8 7 6 11 11 N 1.46501 * 109.47344 * 24.71580 * 8 7 6 12 12 C 1.34778 * 120.00189 * 154.99885 * 11 8 7 13 13 O 1.21345 * 119.99684 * 0.02562 * 12 11 8 14 14 C 1.49449 * 120.00001 * 180.02562 * 12 11 8 15 15 O 1.21347 * 120.00228 * 5.09493 * 14 12 11 16 16 N 1.34774 * 120.00048 * 185.09256 * 14 12 11 17 17 C 1.46502 * 120.00331 * 185.04195 * 16 14 12 18 18 C 1.52996 * 109.47063 * 184.77839 * 17 16 14 19 19 C 1.50698 * 115.55121 * 294.81386 * 18 17 16 20 20 H 1.08003 * 119.99766 * 95.20398 * 19 18 17 21 21 C 1.37874 * 119.99926 * 274.92660 * 19 18 17 22 22 N 1.31507 * 120.00401 * 355.41780 * 21 19 18 23 23 Si 1.86807 * 119.99884 * 175.41717 * 21 19 18 24 24 H 1.48500 * 109.47157 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47138 * 120.00273 * 23 21 19 26 26 H 1.48505 * 109.47155 * 240.00161 * 23 21 19 27 27 C 1.53002 * 117.49906 * 80.48488 * 18 17 16 28 28 C 1.53002 * 117.49925 * 149.14404 * 18 17 16 29 29 H 1.09004 * 109.47189 * 269.97394 * 1 2 3 30 30 H 1.08994 * 109.47720 * 29.97050 * 1 2 3 31 31 H 1.08996 * 109.47249 * 149.98052 * 1 2 3 32 32 H 1.07996 * 120.41879 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.61379 * 180.02562 * 4 3 2 34 34 H 1.08004 * 119.62305 * 180.24544 * 6 5 4 35 35 H 1.09007 * 109.46986 * 299.99833 * 10 8 7 36 36 H 1.08993 * 109.47410 * 59.99463 * 10 8 7 37 37 H 1.09005 * 109.47135 * 180.02562 * 10 8 7 38 38 H 0.97003 * 120.00317 * 335.00683 * 11 8 7 39 39 H 0.97000 * 119.99834 * 5.03638 * 16 14 12 40 40 H 1.08991 * 109.46950 * 64.77719 * 17 16 14 41 41 H 1.09002 * 109.46795 * 304.77265 * 17 16 14 42 42 H 0.97005 * 120.00851 * 184.99676 * 22 21 19 43 43 H 1.09007 * 117.49900 * 214.99948 * 27 18 17 44 44 H 1.08994 * 117.50021 * 0.02562 * 27 18 17 45 45 H 1.09005 * 117.49794 * 359.97438 * 28 18 17 46 46 H 1.09000 * 117.49885 * 144.96827 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0005 6 6 3.5983 -1.1514 0.0045 7 6 2.2166 -1.1908 -0.0003 8 6 1.4909 -2.5115 0.0005 9 1 0.5786 -2.4245 0.5906 10 6 1.1340 -2.8981 -1.4363 11 7 2.3532 -3.5423 0.5836 12 6 1.8071 -4.6362 1.1507 13 8 0.6011 -4.7675 1.1779 14 6 2.6868 -5.6875 1.7460 15 8 3.8866 -5.5143 1.8021 16 7 2.1477 -6.8278 2.2207 17 6 2.9941 -7.8096 2.9034 18 6 2.1671 -9.0537 3.2339 19 6 1.0506 -8.8477 4.2248 20 1 0.0472 -8.6542 3.8752 21 6 1.3090 -8.9120 5.5776 22 7 2.5089 -9.2417 6.0030 23 14 -0.0455 -8.5307 6.8063 24 1 -1.2936 -8.1899 6.0773 25 1 -0.2832 -9.7184 7.6654 26 1 0.3634 -7.3812 7.6530 27 6 1.9374 -10.0679 2.1116 28 6 2.8947 -10.3994 3.2591 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5133 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6965 2.1378 0.0004 33 1 4.1582 2.0755 -0.0001 34 1 4.1585 -2.0748 0.0083 35 1 0.4924 -2.1312 -1.8702 36 1 2.0462 -2.9851 -2.0264 37 1 0.6087 -3.8532 -1.4357 38 1 3.3173 -3.4376 0.5616 39 1 1.1992 -6.9985 2.1104 40 1 3.3824 -7.3761 3.8249 41 1 3.8245 -8.0873 2.2542 42 1 2.6722 -9.3577 6.9521 43 1 0.9787 -10.5862 2.0900 44 1 2.3758 -9.8491 1.1380 45 1 3.9625 -10.3984 3.0399 46 1 2.5661 -11.1355 3.9928 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330210525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:18 Heat of formation + Delta-G solvation = -14.545201 kcal Electronic energy + Delta-G solvation = -27790.765751 eV Core-core repulsion = 23874.137341 eV Total energy + Delta-G solvation = -3916.628410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.08248 -40.12300 -38.34387 -36.73924 -36.27049 -34.32527 -33.42104 -31.98664 -31.71049 -29.94698 -28.26715 -27.11629 -25.53081 -24.79994 -23.76011 -22.45284 -21.28604 -21.05824 -19.98653 -19.56026 -18.24324 -17.32385 -16.75241 -16.31323 -16.09233 -15.73908 -15.61691 -15.02751 -14.84927 -14.71430 -14.68098 -14.15999 -13.88907 -13.66731 -13.46808 -13.23723 -13.09509 -13.00174 -12.79078 -12.69492 -12.62163 -11.94729 -11.86905 -11.63829 -11.49486 -11.34537 -11.00752 -10.97152 -10.52470 -10.26381 -9.82802 -9.74753 -9.64493 -9.52417 -9.28992 -9.22197 -9.09496 -8.55353 -8.41384 -8.19994 -6.10181 -4.19947 0.72233 0.88128 1.71736 2.55975 3.24859 3.34227 3.37801 3.42063 3.53801 3.89476 4.00727 4.26904 4.32968 4.34733 4.44995 4.65509 4.82569 4.92938 4.96099 5.04693 5.09747 5.16467 5.17516 5.32177 5.33269 5.40432 5.49484 5.60638 5.70204 5.86056 5.94362 5.95217 6.19232 6.27099 6.32473 6.38525 6.45990 6.65062 6.73251 6.94707 7.07347 7.13255 7.31180 7.48363 7.64376 7.77023 7.80287 8.09265 8.30084 8.48155 8.82616 9.47980 10.96865 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.002576 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.656861 B =10868.073081 C =11311.675419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.029 4.029 3 C -0.172 4.172 4 C 0.099 3.901 5 N -0.482 5.482 6 C 0.110 3.890 7 C -0.146 4.146 8 C 0.187 3.813 9 H 0.105 0.895 10 C -0.161 4.161 11 N -0.706 5.706 12 C 0.512 3.488 13 O -0.515 6.515 14 C 0.495 3.505 15 O -0.539 6.539 16 N -0.665 5.665 17 C 0.159 3.841 18 C 0.021 3.979 19 C -0.501 4.501 20 H 0.062 0.938 21 C 0.073 3.927 22 N -0.875 5.875 23 Si 0.890 3.110 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.283 1.283 27 C -0.210 4.210 28 C -0.139 4.139 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.410 0.590 39 H 0.414 0.586 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.261 0.739 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 18.252 -14.101 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.037 4.037 3 C -0.191 4.191 4 C -0.057 4.057 5 N -0.190 5.190 6 C -0.048 4.048 7 C -0.148 4.148 8 C 0.082 3.918 9 H 0.123 0.877 10 C -0.219 4.219 11 N -0.362 5.362 12 C 0.294 3.706 13 O -0.389 6.389 14 C 0.274 3.726 15 O -0.418 6.418 16 N -0.315 5.315 17 C 0.037 3.963 18 C 0.020 3.980 19 C -0.538 4.538 20 H 0.081 0.919 21 C -0.131 4.131 22 N -0.511 5.511 23 Si 0.718 3.282 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.247 4.247 28 C -0.177 4.177 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.174 0.826 34 H 0.171 0.829 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.249 0.751 39 H 0.250 0.750 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.982 18.278 -13.825 22.938 hybrid contribution -1.454 0.188 0.820 1.680 sum -2.437 18.466 -13.006 22.717 Atomic orbital electron populations 1.20970 0.89966 1.03808 1.03542 1.20121 0.96903 0.92055 0.94648 1.22042 0.95636 0.98518 1.02934 1.22815 0.91815 0.96342 0.94754 1.67720 1.40996 0.98323 1.11977 1.22532 0.90914 0.96503 0.94808 1.20789 0.95429 0.95084 1.03537 1.19759 0.93563 0.82823 0.95675 0.87703 1.22202 1.02371 1.02817 0.94479 1.45929 1.11353 1.20267 1.58694 1.20523 0.88541 0.83148 0.78409 1.90753 1.14469 1.77550 1.56161 1.19875 0.87934 0.83746 0.81040 1.90722 1.14544 1.78996 1.57558 1.45891 1.14396 1.17313 1.53854 1.21226 0.91370 0.88660 0.95093 1.19035 0.97504 0.86167 0.95314 1.20424 0.93364 1.50406 0.89613 0.91939 1.24989 0.95333 0.94371 0.98391 1.69991 1.20347 1.45904 1.14884 0.86566 0.82263 0.78085 0.81318 1.19558 1.21008 1.20928 1.23035 1.00835 1.08044 0.92785 1.22478 0.94770 1.01434 0.99064 0.89967 0.90661 0.90361 0.84543 0.82600 0.82853 0.91161 0.91868 0.90905 0.75128 0.74986 0.90762 0.93335 0.92884 0.90212 0.91639 0.91723 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.77 9.31 36.00 0.34 -0.43 16 2 C -0.03 -0.24 5.92 -104.32 -0.62 -0.85 16 3 C -0.17 -1.26 9.82 -39.44 -0.39 -1.65 16 4 C 0.10 0.85 11.18 -17.55 -0.20 0.65 16 5 N -0.48 -5.33 10.36 -13.25 -0.14 -5.47 16 6 C 0.11 1.15 10.41 -17.55 -0.18 0.97 16 7 C -0.15 -1.40 5.07 -104.48 -0.53 -1.93 16 8 C 0.19 1.91 2.11 -69.08 -0.15 1.77 16 9 H 0.11 1.15 6.53 -51.93 -0.34 0.81 16 10 C -0.16 -1.41 9.30 37.16 0.35 -1.07 16 11 N -0.71 -8.76 4.99 -55.36 -0.28 -9.04 16 12 C 0.51 8.10 7.85 -11.59 -0.09 8.01 16 13 O -0.51 -8.96 16.16 5.50 0.09 -8.87 16 14 C 0.49 9.11 7.88 -11.59 -0.09 9.02 16 15 O -0.54 -10.78 16.47 5.50 0.09 -10.69 16 16 N -0.66 -13.09 5.46 -60.73 -0.33 -13.42 16 17 C 0.16 3.49 5.53 -4.04 -0.02 3.47 16 18 C 0.02 0.48 1.47 -155.66 -0.23 0.25 16 19 C -0.50 -12.88 8.59 -34.44 -0.30 -13.18 16 20 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 21 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 22 N -0.88 -23.97 12.65 55.43 0.70 -23.27 16 23 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.21 -4.32 9.96 -26.69 -0.27 -4.59 16 28 C -0.14 -3.13 9.14 -26.69 -0.24 -3.37 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 31 H 0.08 0.46 5.64 -51.93 -0.29 0.17 16 32 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 33 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 34 H 0.15 1.47 6.08 -52.48 -0.32 1.15 16 35 H 0.07 0.49 6.97 -51.93 -0.36 0.13 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.41 4.76 5.71 -40.82 -0.23 4.53 16 39 H 0.41 8.03 7.84 -40.82 -0.32 7.71 16 40 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 41 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 42 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 43 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 46 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 LS Contribution 388.24 15.07 5.85 5.85 Total: -1.00 -30.36 388.24 -8.23 -38.59 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.48 Total: 11.76 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.71 Total: -1.10 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.04 Total: -51.20 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.18 Total: -19.56 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.36 -8.23 -38.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330210525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.040 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds