Wall clock time and date at job start Tue Mar 31 2020 17:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38677 * 120.78531 * 2 1 4 4 C 1.38187 * 119.15813 * 180.02562 * 3 2 1 5 5 N 1.31880 * 120.76806 * 359.97438 * 4 3 2 6 6 C 1.31851 * 121.72445 * 359.77008 * 5 4 3 7 7 C 1.38229 * 120.76413 * 0.49320 * 6 5 4 8 8 C 1.50702 * 120.41950 * 179.77792 * 7 6 5 9 9 H 1.09000 * 109.47345 * 144.72049 * 8 7 6 10 10 C 1.53002 * 109.46965 * 264.72188 * 8 7 6 11 11 N 1.46501 * 109.47344 * 24.71580 * 8 7 6 12 12 C 1.34778 * 120.00189 * 154.99885 * 11 8 7 13 13 O 1.21345 * 119.99684 * 0.02562 * 12 11 8 14 14 C 1.49449 * 120.00001 * 180.02562 * 12 11 8 15 15 O 1.21347 * 120.00228 * 5.09493 * 14 12 11 16 16 N 1.34774 * 120.00048 * 185.09256 * 14 12 11 17 17 C 1.46502 * 120.00331 * 185.04195 * 16 14 12 18 18 C 1.52996 * 109.47063 * 184.77839 * 17 16 14 19 19 C 1.50698 * 115.55121 * 294.81386 * 18 17 16 20 20 H 1.08003 * 119.99766 * 95.20398 * 19 18 17 21 21 C 1.37874 * 119.99926 * 274.92660 * 19 18 17 22 22 N 1.31507 * 120.00401 * 355.41780 * 21 19 18 23 23 Si 1.86807 * 119.99884 * 175.41717 * 21 19 18 24 24 H 1.48500 * 109.47157 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47138 * 120.00273 * 23 21 19 26 26 H 1.48505 * 109.47155 * 240.00161 * 23 21 19 27 27 C 1.53002 * 117.49906 * 80.48488 * 18 17 16 28 28 C 1.53002 * 117.49925 * 149.14404 * 18 17 16 29 29 H 1.09004 * 109.47189 * 269.97394 * 1 2 3 30 30 H 1.08994 * 109.47720 * 29.97050 * 1 2 3 31 31 H 1.08996 * 109.47249 * 149.98052 * 1 2 3 32 32 H 1.07996 * 120.41879 * 0.02562 * 3 2 1 33 33 H 1.08003 * 119.61379 * 180.02562 * 4 3 2 34 34 H 1.08004 * 119.62305 * 180.24544 * 6 5 4 35 35 H 1.09007 * 109.46986 * 299.99833 * 10 8 7 36 36 H 1.08993 * 109.47410 * 59.99463 * 10 8 7 37 37 H 1.09005 * 109.47135 * 180.02562 * 10 8 7 38 38 H 0.97003 * 120.00317 * 335.00683 * 11 8 7 39 39 H 0.97000 * 119.99834 * 5.03638 * 16 14 12 40 40 H 1.08991 * 109.46950 * 64.77719 * 17 16 14 41 41 H 1.09002 * 109.46795 * 304.77265 * 17 16 14 42 42 H 0.97005 * 120.00851 * 184.99676 * 22 21 19 43 43 H 1.09007 * 117.49900 * 214.99948 * 27 18 17 44 44 H 1.08994 * 117.50021 * 0.02562 * 27 18 17 45 45 H 1.09005 * 117.49794 * 359.97438 * 28 18 17 46 46 H 1.09000 * 117.49885 * 144.96827 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0005 6 6 3.5983 -1.1514 0.0045 7 6 2.2166 -1.1908 -0.0003 8 6 1.4909 -2.5115 0.0005 9 1 0.5786 -2.4245 0.5906 10 6 1.1340 -2.8981 -1.4363 11 7 2.3532 -3.5423 0.5836 12 6 1.8071 -4.6362 1.1507 13 8 0.6011 -4.7675 1.1779 14 6 2.6868 -5.6875 1.7460 15 8 3.8866 -5.5143 1.8021 16 7 2.1477 -6.8278 2.2207 17 6 2.9941 -7.8096 2.9034 18 6 2.1671 -9.0537 3.2339 19 6 1.0506 -8.8477 4.2248 20 1 0.0472 -8.6542 3.8752 21 6 1.3090 -8.9120 5.5776 22 7 2.5089 -9.2417 6.0030 23 14 -0.0455 -8.5307 6.8063 24 1 -1.2936 -8.1899 6.0773 25 1 -0.2832 -9.7184 7.6654 26 1 0.3634 -7.3812 7.6530 27 6 1.9374 -10.0679 2.1116 28 6 2.8947 -10.3994 3.2591 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5133 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6965 2.1378 0.0004 33 1 4.1582 2.0755 -0.0001 34 1 4.1585 -2.0748 0.0083 35 1 0.4924 -2.1312 -1.8702 36 1 2.0462 -2.9851 -2.0264 37 1 0.6087 -3.8532 -1.4357 38 1 3.3173 -3.4376 0.5616 39 1 1.1992 -6.9985 2.1104 40 1 3.3824 -7.3761 3.8249 41 1 3.8245 -8.0873 2.2542 42 1 2.6722 -9.3577 6.9521 43 1 0.9787 -10.5862 2.0900 44 1 2.3758 -9.8491 1.1380 45 1 3.9625 -10.3984 3.0399 46 1 2.5661 -11.1355 3.9928 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330210525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:17 Heat of formation + Delta-G solvation = -34.254657 kcal Electronic energy + Delta-G solvation = -27791.620417 eV Core-core repulsion = 23874.137341 eV Total energy + Delta-G solvation = -3917.483076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.02235 -41.24583 -39.74791 -38.47622 -37.26140 -35.26042 -34.79781 -33.96760 -32.59674 -30.69530 -28.86858 -28.71489 -27.43444 -25.77620 -24.81881 -23.27777 -22.89935 -22.03661 -21.42801 -21.15996 -19.67950 -18.31817 -18.03143 -17.57889 -17.22112 -17.03429 -16.63812 -16.58125 -16.29601 -15.80250 -15.76665 -15.46860 -15.08890 -14.95425 -14.55591 -14.44428 -14.03019 -13.81494 -13.70081 -13.61238 -13.49769 -13.40623 -13.29704 -12.95068 -12.87207 -12.79115 -12.58422 -12.35588 -12.14601 -12.01524 -11.42588 -10.97556 -10.80198 -10.61831 -10.46531 -10.43588 -10.34539 -10.13513 -10.00137 -9.96099 -8.11251 -6.24957 0.05210 0.23410 0.33772 1.30468 1.39335 1.44099 1.53234 2.12933 2.41185 2.61591 2.76284 3.16373 3.25470 3.39833 3.57831 3.60945 3.76226 3.84811 3.94972 4.15146 4.19523 4.28720 4.45206 4.51206 4.57087 4.62245 4.65715 4.68564 4.74098 4.76304 4.81928 4.91202 4.92303 5.02260 5.10007 5.18322 5.25936 5.28448 5.33272 5.36780 5.52439 5.67971 5.70857 5.76989 5.92396 6.35122 6.39942 6.71125 6.82549 6.96114 6.97983 7.44978 8.95484 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.002576 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.656861 B =10868.073081 C =11311.675419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.032 4.032 3 C -0.165 4.165 4 C 0.090 3.910 5 N -0.512 5.512 6 C 0.091 3.909 7 C -0.154 4.154 8 C 0.188 3.812 9 H 0.101 0.899 10 C -0.155 4.155 11 N -0.690 5.690 12 C 0.520 3.480 13 O -0.532 6.532 14 C 0.495 3.505 15 O -0.556 6.556 16 N -0.667 5.667 17 C 0.174 3.826 18 C -0.003 4.003 19 C -0.507 4.507 20 H 0.059 0.941 21 C 0.028 3.972 22 N -0.904 5.904 23 Si 0.945 3.055 24 H -0.266 1.266 25 H -0.281 1.281 26 H -0.287 1.287 27 C -0.180 4.180 28 C -0.146 4.146 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.169 0.831 33 H 0.181 0.819 34 H 0.152 0.848 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.414 0.586 39 H 0.416 0.584 40 H 0.039 0.961 41 H 0.056 0.944 42 H 0.260 0.740 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.286 20.190 -15.483 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.041 4.041 3 C -0.184 4.184 4 C -0.066 4.066 5 N -0.222 5.222 6 C -0.065 4.065 7 C -0.156 4.156 8 C 0.084 3.916 9 H 0.119 0.881 10 C -0.213 4.213 11 N -0.346 5.346 12 C 0.301 3.699 13 O -0.408 6.408 14 C 0.275 3.725 15 O -0.436 6.436 16 N -0.317 5.317 17 C 0.051 3.949 18 C -0.004 4.004 19 C -0.545 4.545 20 H 0.077 0.923 21 C -0.174 4.174 22 N -0.541 5.541 23 Si 0.772 3.228 24 H -0.190 1.190 25 H -0.207 1.207 26 H -0.214 1.214 27 C -0.217 4.217 28 C -0.185 4.185 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.186 0.814 33 H 0.198 0.802 34 H 0.169 0.831 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.254 0.746 39 H 0.252 0.748 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.093 0.907 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.275 20.239 -15.237 25.436 hybrid contribution -1.021 -0.311 1.201 1.606 sum -3.296 19.929 -14.036 24.597 Atomic orbital electron populations 1.21037 0.88332 1.04971 1.03917 1.20447 0.98131 0.91755 0.93754 1.22390 0.95229 0.99548 1.01249 1.23324 0.92867 0.96433 0.94018 1.67702 1.42057 0.99157 1.13236 1.22567 0.91449 0.96625 0.95887 1.20720 0.95111 0.95200 1.04612 1.19908 0.92905 0.82504 0.96278 0.88128 1.22168 1.02805 1.02862 0.93499 1.45946 1.11972 1.19496 1.57153 1.19943 0.87775 0.83379 0.78850 1.90750 1.14738 1.78008 1.57305 1.20337 0.88039 0.83782 0.80323 1.90708 1.15506 1.79305 1.58092 1.45786 1.14208 1.17614 1.54107 1.20836 0.91629 0.88497 0.93937 1.19070 0.97643 0.86943 0.96714 1.20693 0.93908 1.49535 0.90320 0.92298 1.25640 0.97081 0.94580 1.00050 1.70090 1.21814 1.47255 1.14959 0.85698 0.80192 0.77611 0.79319 1.18971 1.20694 1.21352 1.23023 1.00408 1.05348 0.92910 1.22399 0.95717 1.00517 0.99823 0.89868 0.88459 0.90318 0.81357 0.80224 0.83138 0.88936 0.91535 0.92152 0.74624 0.74759 0.94226 0.92616 0.93091 0.89856 0.89160 0.90697 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 9.31 71.24 0.66 -0.51 16 2 C -0.03 -0.46 5.92 -19.67 -0.12 -0.57 16 3 C -0.16 -1.96 9.82 22.36 0.22 -1.74 16 4 C 0.09 1.36 11.18 84.67 0.95 2.31 16 5 N -0.51 -10.96 10.36 -195.84 -2.03 -12.99 16 6 C 0.09 1.88 10.41 84.69 0.88 2.76 16 7 C -0.15 -2.77 5.07 -19.77 -0.10 -2.87 16 8 C 0.19 3.64 2.11 44.25 0.09 3.73 16 9 H 0.10 2.08 6.53 -2.39 -0.02 2.06 16 10 C -0.16 -2.50 9.30 71.98 0.67 -1.83 16 11 N -0.69 -16.78 4.99 -447.43 -2.23 -19.02 16 12 C 0.52 16.25 7.85 87.27 0.69 16.93 16 13 O -0.53 -18.19 16.16 -3.23 -0.05 -18.24 16 14 C 0.49 18.22 7.88 87.27 0.69 18.91 16 15 O -0.56 -22.35 16.47 -3.24 -0.05 -22.40 16 16 N -0.67 -26.30 5.46 -464.43 -2.54 -28.84 16 17 C 0.17 7.74 5.53 86.38 0.48 8.22 16 18 C 0.00 -0.14 1.47 -52.93 -0.08 -0.22 16 19 C -0.51 -26.19 8.59 25.60 0.22 -25.97 16 20 H 0.06 3.02 7.82 -2.91 -0.02 2.99 16 21 C 0.03 1.46 5.43 84.65 0.46 1.92 16 22 N -0.90 -50.43 12.65 21.45 0.27 -50.15 16 23 Si 0.95 42.74 29.54 68.60 2.03 44.76 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 27 C -0.18 -7.15 9.96 30.62 0.30 -6.85 16 28 C -0.15 -6.56 9.14 30.62 0.28 -6.28 16 29 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.10 0.48 8.10 -2.39 -0.02 0.46 16 31 H 0.08 0.73 5.64 -2.39 -0.01 0.72 16 32 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 33 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.15 2.94 6.08 -2.91 -0.02 2.92 16 35 H 0.09 1.08 6.97 -2.38 -0.02 1.06 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.41 9.55 5.71 -92.71 -0.53 9.02 16 39 H 0.42 16.06 7.84 -92.71 -0.73 15.34 16 40 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.06 2.36 8.05 -2.39 -0.02 2.34 16 42 H 0.26 13.95 8.32 -92.70 -0.77 13.18 16 43 H 0.08 3.26 8.14 -2.38 -0.02 3.24 16 44 H 0.09 3.15 8.14 -2.39 -0.02 3.14 16 45 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 46 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -65.29 388.24 1.45 -63.83 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.23 Total: 35.10 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 6.29 Total: 7.95 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -6.53 Total: -111.00 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -0.11 Total: -40.65 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -65.29 1.45 -63.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330210525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.577 kcal (2) G-P(sol) polarization free energy of solvation -65.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds