Wall clock time and date at job start Tue Mar 31 2020 16:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38223 * 120.41771 * 2 1 4 4 N 1.31864 * 120.76374 * 179.74977 * 3 2 1 5 5 C 1.31879 * 121.72493 * 0.56712 * 4 3 2 6 6 C 1.50700 * 119.61861 * 179.70885 * 5 4 3 7 7 N 1.46500 * 109.47005 * 269.72926 * 6 5 4 8 8 C 1.34774 * 119.99630 * 180.02562 * 7 6 5 9 9 O 1.21349 * 120.00173 * 359.97438 * 8 7 6 10 10 C 1.49453 * 119.99846 * 180.02562 * 8 7 6 11 11 O 1.21353 * 120.00125 * 5.08748 * 10 8 7 12 12 N 1.34774 * 120.00102 * 185.09319 * 10 8 7 13 13 C 1.46494 * 120.00151 * 184.55658 * 12 10 8 14 14 C 1.53003 * 109.47491 * 184.70074 * 13 12 10 15 15 C 1.50708 * 115.54705 * 294.79992 * 14 13 12 16 16 H 1.07999 * 119.99435 * 121.52691 * 15 14 13 17 17 C 1.37869 * 119.99831 * 301.24568 * 15 14 13 18 18 N 1.31521 * 120.00014 * 173.16061 * 17 15 14 19 19 Si 1.86803 * 120.00258 * 353.16421 * 17 15 14 20 20 H 1.48495 * 109.47128 * 94.23742 * 19 17 15 21 21 H 1.48507 * 109.47100 * 214.23862 * 19 17 15 22 22 H 1.48500 * 109.46890 * 334.23636 * 19 17 15 23 23 C 1.53001 * 117.49727 * 80.46616 * 14 13 12 24 24 C 1.52994 * 117.50267 * 149.12521 * 14 13 12 25 25 C 1.38190 * 120.76463 * 359.43455 * 5 4 3 26 26 C 1.50701 * 120.41914 * 180.29318 * 25 5 4 27 27 C 1.38628 * 120.42077 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46413 * 269.97366 * 1 2 3 29 29 H 1.08992 * 109.47279 * 29.97342 * 1 2 3 30 30 H 1.08997 * 109.46940 * 149.97377 * 1 2 3 31 31 H 1.08001 * 119.62131 * 0.05458 * 3 2 1 32 32 H 1.09003 * 109.46751 * 149.73089 * 6 5 4 33 33 H 1.08994 * 109.47175 * 29.72981 * 6 5 4 34 34 H 0.96995 * 120.00213 * 0.02562 * 7 6 5 35 35 H 0.97001 * 120.00152 * 4.55797 * 12 10 8 36 36 H 1.08998 * 109.47592 * 64.70314 * 13 12 10 37 37 H 1.08995 * 109.47447 * 304.69904 * 13 12 10 38 38 H 0.97002 * 120.00052 * 180.02562 * 18 17 15 39 39 H 1.09004 * 117.49881 * 215.00573 * 23 14 13 40 40 H 1.08997 * 117.49907 * 0.02562 * 23 14 13 41 41 H 1.09000 * 117.50159 * 359.97438 * 24 14 13 42 42 H 1.08998 * 117.50086 * 144.97404 * 24 14 13 43 43 H 1.08997 * 109.46596 * 90.00205 * 26 25 5 44 44 H 1.08996 * 109.46894 * 210.00488 * 26 25 5 45 45 H 1.09004 * 109.47058 * 330.00256 * 26 25 5 46 46 H 1.07995 * 120.79338 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5255 1.1999 0.0049 5 6 4.2257 0.0824 -0.0010 6 6 5.7313 0.1470 -0.0016 7 7 6.2187 0.1683 -1.3830 8 6 7.5424 0.2245 -1.6298 9 8 8.3306 0.2581 -0.7077 10 6 8.0396 0.2468 -3.0390 11 8 7.2513 0.3075 -3.9596 12 7 9.3634 0.1994 -3.2874 13 6 9.8556 0.3218 -4.6617 14 6 11.3721 0.1193 -4.6803 15 6 12.1768 1.1681 -3.9566 16 1 12.8288 0.8830 -3.1442 17 6 12.0848 2.4905 -4.3354 18 7 12.6796 3.4218 -3.6221 19 14 11.1154 2.9598 -5.8616 20 1 9.7292 3.3257 -5.4745 21 1 11.7663 4.1182 -6.5248 22 1 11.0800 1.8085 -6.7989 23 6 11.8932 -1.3188 -4.6469 24 6 11.9868 -0.5003 -5.9369 25 6 3.5949 -1.1471 -0.0011 26 6 4.4028 -2.4192 -0.0013 27 6 2.2090 -1.1954 -0.0005 28 1 -0.3632 -0.0005 1.0278 29 1 -0.3633 0.8901 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 1.6675 2.1277 0.0009 32 1 6.1326 -0.7268 0.5118 33 1 6.0564 1.0515 0.5123 34 1 5.5886 0.1418 -2.1201 35 1 9.9903 0.0842 -2.5562 36 1 9.6168 1.3133 -5.0464 37 1 9.3805 -0.4345 -5.2866 38 1 12.6146 4.3522 -3.8884 39 1 12.8181 -1.5064 -4.1014 40 1 11.1558 -2.1207 -4.6120 41 1 11.3108 -0.7642 -6.7503 42 1 12.9730 -0.1491 -6.2405 43 1 4.5976 -2.7260 1.0263 44 1 3.8463 -3.2029 -0.5153 45 1 5.3488 -2.2487 -0.5152 46 1 1.6889 -2.1419 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334950409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:34 Heat of formation + Delta-G solvation = -15.553890 kcal Electronic energy + Delta-G solvation = -27536.210764 eV Core-core repulsion = 23619.538614 eV Total energy + Delta-G solvation = -3916.672150 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.99444 -40.16824 -38.33089 -37.01736 -35.71895 -34.00294 -33.83919 -33.15449 -32.19977 -29.26442 -27.84904 -27.44902 -25.98025 -25.24508 -23.42269 -22.64290 -21.59373 -21.16059 -20.06051 -19.45916 -18.28900 -17.37688 -16.84506 -16.49235 -16.22968 -15.70514 -15.42094 -15.07217 -14.85849 -14.75533 -14.53680 -14.10958 -13.81261 -13.66057 -13.49446 -13.32711 -13.13931 -13.00887 -12.92752 -12.80312 -12.72538 -12.54153 -12.28957 -12.15543 -11.65422 -11.38634 -11.06364 -10.71316 -10.59703 -10.29694 -9.96163 -9.79150 -9.65415 -9.38611 -9.27315 -9.23316 -9.03472 -8.88456 -8.50359 -8.44771 -6.17564 -4.19496 0.58488 0.88526 1.73620 2.60319 3.26277 3.36544 3.38537 3.41197 3.54070 3.85020 4.04017 4.21157 4.33481 4.36724 4.45374 4.55940 4.72230 4.75612 4.98043 4.99567 5.09157 5.17103 5.20113 5.20916 5.23230 5.41026 5.44647 5.53914 5.60532 5.70681 5.83396 5.85006 5.89290 6.08706 6.11283 6.15052 6.31518 6.36490 6.44817 6.65377 6.79611 6.89870 7.07753 7.17676 7.62638 7.64789 7.76498 8.07141 8.39818 8.44320 8.85437 9.45059 10.93478 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.002462 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.851657 B =11370.260116 C =11752.912171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.128 4.128 3 C 0.093 3.907 4 N -0.459 5.459 5 C 0.098 3.902 6 C 0.170 3.830 7 N -0.701 5.701 8 C 0.511 3.489 9 O -0.510 6.510 10 C 0.499 3.501 11 O -0.541 6.541 12 N -0.664 5.664 13 C 0.149 3.851 14 C -0.019 4.019 15 C -0.491 4.491 16 H 0.080 0.920 17 C 0.083 3.917 18 N -0.888 5.888 19 Si 0.867 3.133 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.251 1.251 23 C -0.179 4.179 24 C -0.186 4.186 25 C -0.109 4.109 26 C -0.119 4.119 27 C -0.082 4.082 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.157 0.843 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.412 0.588 35 H 0.420 0.580 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.266 0.734 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.119 -10.962 7.389 26.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.130 4.130 3 C -0.065 4.065 4 N -0.166 5.166 5 C -0.040 4.040 6 C 0.047 3.953 7 N -0.356 5.356 8 C 0.292 3.708 9 O -0.384 6.384 10 C 0.278 3.722 11 O -0.420 6.420 12 N -0.314 5.314 13 C 0.026 3.974 14 C -0.020 4.020 15 C -0.528 4.528 16 H 0.098 0.902 17 C -0.121 4.121 18 N -0.523 5.523 19 Si 0.695 3.305 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.175 1.175 23 C -0.217 4.217 24 C -0.224 4.224 25 C -0.112 4.112 26 C -0.176 4.176 27 C -0.107 4.107 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.174 0.826 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.248 0.752 35 H 0.258 0.742 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.544 -9.857 7.443 25.706 hybrid contribution -1.061 -0.267 -0.804 1.358 sum -23.606 -10.125 6.638 26.529 Atomic orbital electron populations 1.20745 0.90000 1.03358 1.02730 1.21013 0.97734 0.94155 1.00073 1.22683 0.89477 0.97674 0.96706 1.67491 1.08386 1.30658 1.10113 1.20975 0.95751 0.88282 0.98946 1.20154 0.87042 1.04410 0.83725 1.45639 1.06997 1.74221 1.08702 1.20350 0.82770 0.77522 0.90188 1.90790 1.54987 1.46993 1.45655 1.19927 0.84087 0.79434 0.88734 1.90714 1.55423 1.50288 1.45544 1.45726 1.05742 1.68119 1.11827 1.21299 0.94793 1.00512 0.80793 1.19582 0.90071 0.93628 0.98704 1.20256 1.25512 0.89406 1.17608 0.90160 1.24934 0.94765 0.96283 0.96149 1.69895 1.43513 1.00907 1.38022 0.87053 0.79970 0.78865 0.84642 1.20421 1.21765 1.17492 1.22797 1.02434 0.94333 1.02094 1.23070 1.02387 1.05895 0.91097 1.20794 0.94602 0.96426 0.99371 1.20875 1.00060 0.93595 1.03096 1.21399 0.93139 0.98390 0.97817 0.90713 0.90938 0.91202 0.82558 0.89120 0.89096 0.75212 0.74222 0.92032 0.92363 0.92382 0.89453 0.90811 0.91088 0.89136 0.90334 0.90924 0.90466 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.04 36.01 0.36 -0.13 16 2 C -0.13 -0.94 5.90 -104.48 -0.62 -1.56 16 3 C 0.09 0.84 10.86 -17.54 -0.19 0.65 16 4 N -0.46 -5.39 10.27 -9.47 -0.10 -5.49 16 5 C 0.10 1.07 6.15 -82.59 -0.51 0.56 16 6 C 0.17 2.00 5.16 -5.19 -0.03 1.97 16 7 N -0.70 -9.52 5.50 -61.91 -0.34 -9.86 16 8 C 0.51 8.62 7.89 -11.59 -0.09 8.53 16 9 O -0.51 -9.62 16.50 5.50 0.09 -9.53 16 10 C 0.50 9.51 7.88 -11.58 -0.09 9.42 16 11 O -0.54 -11.03 16.47 5.49 0.09 -10.94 16 12 N -0.66 -13.40 5.46 -60.73 -0.33 -13.73 16 13 C 0.15 3.19 5.08 -4.04 -0.02 3.17 16 14 C -0.02 -0.41 0.85 -155.66 -0.13 -0.54 16 15 C -0.49 -13.04 9.19 -34.44 -0.32 -13.36 16 16 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 17 C 0.08 2.31 5.46 -17.82 -0.10 2.21 16 18 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 19 Si 0.87 21.36 24.69 -169.99 -4.20 17.16 16 20 H -0.28 -6.97 6.96 56.52 0.39 -6.58 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.25 -5.78 6.11 56.52 0.35 -5.43 16 23 C -0.18 -3.42 9.96 -26.70 -0.27 -3.69 16 24 C -0.19 -3.73 8.69 -26.70 -0.23 -3.97 16 25 C -0.11 -0.96 5.90 -104.48 -0.62 -1.57 16 26 C -0.12 -0.82 9.21 36.01 0.33 -0.49 16 27 C -0.08 -0.61 9.55 -39.28 -0.37 -0.98 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 30 H 0.07 0.26 8.10 -51.93 -0.42 -0.17 16 31 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.09 0.94 6.69 -51.93 -0.35 0.59 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.41 5.40 7.95 -40.82 -0.32 5.07 16 35 H 0.42 8.51 7.83 -40.82 -0.32 8.19 16 36 H 0.06 1.45 4.27 -51.93 -0.22 1.23 16 37 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 45 H 0.08 0.61 6.68 -51.93 -0.35 0.27 16 46 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -32.38 386.02 -7.75 -40.12 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -6.67 Total: 11.94 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.89 Total: 0.21 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.00 Total: -54.79 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.18 Total: -20.47 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.20 Total: 17.16 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.38 -7.75 -40.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334950409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.571 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds