Wall clock time and date at job start Tue Mar 31 2020 16:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38223 * 120.41771 * 2 1 4 4 N 1.31864 * 120.76374 * 179.74977 * 3 2 1 5 5 C 1.31879 * 121.72493 * 0.56712 * 4 3 2 6 6 C 1.50700 * 119.61861 * 179.70885 * 5 4 3 7 7 N 1.46500 * 109.47005 * 269.72926 * 6 5 4 8 8 C 1.34774 * 119.99630 * 180.02562 * 7 6 5 9 9 O 1.21349 * 120.00173 * 359.97438 * 8 7 6 10 10 C 1.49453 * 119.99846 * 180.02562 * 8 7 6 11 11 O 1.21353 * 120.00125 * 5.08748 * 10 8 7 12 12 N 1.34774 * 120.00102 * 185.09319 * 10 8 7 13 13 C 1.46494 * 120.00151 * 184.55658 * 12 10 8 14 14 C 1.53003 * 109.47491 * 184.70074 * 13 12 10 15 15 C 1.50708 * 115.54705 * 294.79992 * 14 13 12 16 16 H 1.07999 * 119.99435 * 121.52691 * 15 14 13 17 17 C 1.37869 * 119.99831 * 301.24568 * 15 14 13 18 18 N 1.31521 * 120.00014 * 173.16061 * 17 15 14 19 19 Si 1.86803 * 120.00258 * 353.16421 * 17 15 14 20 20 H 1.48495 * 109.47128 * 94.23742 * 19 17 15 21 21 H 1.48507 * 109.47100 * 214.23862 * 19 17 15 22 22 H 1.48500 * 109.46890 * 334.23636 * 19 17 15 23 23 C 1.53001 * 117.49727 * 80.46616 * 14 13 12 24 24 C 1.52994 * 117.50267 * 149.12521 * 14 13 12 25 25 C 1.38190 * 120.76463 * 359.43455 * 5 4 3 26 26 C 1.50701 * 120.41914 * 180.29318 * 25 5 4 27 27 C 1.38628 * 120.42077 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46413 * 269.97366 * 1 2 3 29 29 H 1.08992 * 109.47279 * 29.97342 * 1 2 3 30 30 H 1.08997 * 109.46940 * 149.97377 * 1 2 3 31 31 H 1.08001 * 119.62131 * 0.05458 * 3 2 1 32 32 H 1.09003 * 109.46751 * 149.73089 * 6 5 4 33 33 H 1.08994 * 109.47175 * 29.72981 * 6 5 4 34 34 H 0.96995 * 120.00213 * 0.02562 * 7 6 5 35 35 H 0.97001 * 120.00152 * 4.55797 * 12 10 8 36 36 H 1.08998 * 109.47592 * 64.70314 * 13 12 10 37 37 H 1.08995 * 109.47447 * 304.69904 * 13 12 10 38 38 H 0.97002 * 120.00052 * 180.02562 * 18 17 15 39 39 H 1.09004 * 117.49881 * 215.00573 * 23 14 13 40 40 H 1.08997 * 117.49907 * 0.02562 * 23 14 13 41 41 H 1.09000 * 117.50159 * 359.97438 * 24 14 13 42 42 H 1.08998 * 117.50086 * 144.97404 * 24 14 13 43 43 H 1.08997 * 109.46596 * 90.00205 * 26 25 5 44 44 H 1.08996 * 109.46894 * 210.00488 * 26 25 5 45 45 H 1.09004 * 109.47058 * 330.00256 * 26 25 5 46 46 H 1.07995 * 120.79338 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5255 1.1999 0.0049 5 6 4.2257 0.0824 -0.0010 6 6 5.7313 0.1470 -0.0016 7 7 6.2187 0.1683 -1.3830 8 6 7.5424 0.2245 -1.6298 9 8 8.3306 0.2581 -0.7077 10 6 8.0396 0.2468 -3.0390 11 8 7.2513 0.3075 -3.9596 12 7 9.3634 0.1994 -3.2874 13 6 9.8556 0.3218 -4.6617 14 6 11.3721 0.1193 -4.6803 15 6 12.1768 1.1681 -3.9566 16 1 12.8288 0.8830 -3.1442 17 6 12.0848 2.4905 -4.3354 18 7 12.6796 3.4218 -3.6221 19 14 11.1154 2.9598 -5.8616 20 1 9.7292 3.3257 -5.4745 21 1 11.7663 4.1182 -6.5248 22 1 11.0800 1.8085 -6.7989 23 6 11.8932 -1.3188 -4.6469 24 6 11.9868 -0.5003 -5.9369 25 6 3.5949 -1.1471 -0.0011 26 6 4.4028 -2.4192 -0.0013 27 6 2.2090 -1.1954 -0.0005 28 1 -0.3632 -0.0005 1.0278 29 1 -0.3633 0.8901 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 1.6675 2.1277 0.0009 32 1 6.1326 -0.7268 0.5118 33 1 6.0564 1.0515 0.5123 34 1 5.5886 0.1418 -2.1201 35 1 9.9903 0.0842 -2.5562 36 1 9.6168 1.3133 -5.0464 37 1 9.3805 -0.4345 -5.2866 38 1 12.6146 4.3522 -3.8884 39 1 12.8181 -1.5064 -4.1014 40 1 11.1558 -2.1207 -4.6120 41 1 11.3108 -0.7642 -6.7503 42 1 12.9730 -0.1491 -6.2405 43 1 4.5976 -2.7260 1.0263 44 1 3.8463 -3.2029 -0.5153 45 1 5.3488 -2.2487 -0.5152 46 1 1.6889 -2.1419 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334950409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:33 Heat of formation + Delta-G solvation = -39.289814 kcal Electronic energy + Delta-G solvation = -27537.240031 eV Core-core repulsion = 23619.538614 eV Total energy + Delta-G solvation = -3917.701417 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.92382 -41.36466 -39.80089 -38.67440 -36.75338 -35.15996 -34.64161 -34.30203 -34.19938 -30.14907 -29.00654 -28.37947 -27.53790 -26.48366 -24.52276 -23.58015 -23.14374 -21.83075 -21.49030 -21.15032 -19.81568 -18.43063 -18.08179 -17.97703 -17.29619 -17.26465 -16.76868 -16.65235 -16.10236 -15.59575 -15.44607 -15.38561 -15.11951 -14.89720 -14.78378 -14.29175 -14.11117 -14.09633 -14.01175 -13.86500 -13.66017 -13.32908 -13.26795 -13.16845 -13.03209 -12.84906 -12.65539 -12.23555 -12.16803 -12.08808 -11.50711 -11.09507 -10.88496 -10.75515 -10.54847 -10.50195 -10.42002 -10.37399 -10.10769 -9.73557 -8.32521 -6.35892 -0.09498 0.25873 0.28978 1.28420 1.32611 1.36064 1.46250 2.08379 2.32025 2.48712 2.81534 2.99081 3.11550 3.33289 3.47083 3.59496 3.79798 3.83454 3.95139 4.00983 4.21321 4.24028 4.38862 4.42855 4.47049 4.47340 4.54846 4.65382 4.70394 4.73772 4.83172 4.89861 4.93480 4.97824 5.02329 5.11004 5.19705 5.21598 5.24772 5.28506 5.29359 5.53858 5.66332 5.72380 5.87582 6.27676 6.33187 6.65189 6.71670 6.89395 6.94036 7.31107 8.82316 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.002462 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.851657 B =11370.260116 C =11752.912171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.120 4.120 3 C 0.074 3.926 4 N -0.494 5.494 5 C 0.074 3.926 6 C 0.173 3.827 7 N -0.681 5.681 8 C 0.515 3.485 9 O -0.535 6.535 10 C 0.500 3.500 11 O -0.553 6.553 12 N -0.670 5.670 13 C 0.154 3.846 14 C -0.049 4.049 15 C -0.479 4.479 16 H 0.041 0.959 17 C 0.028 3.972 18 N -0.940 5.940 19 Si 0.921 3.079 20 H -0.287 1.287 21 H -0.296 1.296 22 H -0.220 1.220 23 C -0.156 4.156 24 C -0.176 4.176 25 C -0.108 4.108 26 C -0.118 4.118 27 C -0.085 4.085 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.172 0.828 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.416 0.584 35 H 0.418 0.582 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.265 0.735 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.016 -13.536 6.343 30.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.122 4.122 3 C -0.084 4.084 4 N -0.203 5.203 5 C -0.063 4.063 6 C 0.050 3.950 7 N -0.335 5.335 8 C 0.296 3.704 9 O -0.412 6.412 10 C 0.280 3.720 11 O -0.432 6.432 12 N -0.320 5.320 13 C 0.031 3.969 14 C -0.051 4.051 15 C -0.516 4.516 16 H 0.060 0.940 17 C -0.171 4.171 18 N -0.579 5.579 19 Si 0.747 3.253 20 H -0.214 1.214 21 H -0.223 1.223 22 H -0.142 1.142 23 C -0.193 4.193 24 C -0.214 4.214 25 C -0.111 4.111 26 C -0.175 4.175 27 C -0.110 4.110 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.189 0.811 32 H 0.123 0.877 33 H 0.092 0.908 34 H 0.252 0.748 35 H 0.255 0.745 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -25.473 -12.470 6.384 29.071 hybrid contribution -0.245 0.471 -0.380 0.653 sum -25.718 -11.999 6.003 29.007 Atomic orbital electron populations 1.20821 0.87646 1.04407 1.03750 1.21364 0.99366 0.93491 0.97946 1.23050 0.88878 0.99289 0.97170 1.67390 1.09896 1.31641 1.11323 1.20821 0.94876 0.89192 1.01433 1.20226 0.88417 1.04184 0.82200 1.45612 1.05774 1.72144 1.09927 1.19986 0.83645 0.77876 0.88917 1.90784 1.55778 1.48782 1.45847 1.20241 0.83600 0.78585 0.89569 1.90697 1.55578 1.50750 1.46210 1.45759 1.06212 1.68525 1.11499 1.21184 0.94109 1.00003 0.81615 1.19447 0.90130 0.94512 1.00967 1.20404 1.24422 0.90522 1.16298 0.94047 1.25669 0.96031 0.96491 0.98864 1.70034 1.46367 1.01226 1.40271 0.86190 0.77757 0.79304 0.82037 1.21448 1.22278 1.14198 1.22857 1.02591 0.93050 1.00815 1.23116 1.02220 1.04615 0.91420 1.20990 0.95527 0.96130 0.98431 1.20912 0.99406 0.93233 1.03927 1.21785 0.92647 0.99687 0.96899 0.89532 0.90219 0.89873 0.81128 0.87701 0.90774 0.74761 0.74522 0.94242 0.89964 0.92643 0.89808 0.87818 0.88264 0.89852 0.89156 0.89110 0.91770 0.81700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.04 71.24 0.72 0.08 16 2 C -0.12 -1.50 5.90 -19.77 -0.12 -1.62 16 3 C 0.07 1.28 10.86 84.68 0.92 2.20 16 4 N -0.49 -11.59 10.27 -183.88 -1.89 -13.48 16 5 C 0.07 1.57 6.15 42.54 0.26 1.84 16 6 C 0.17 4.08 5.16 85.63 0.44 4.52 16 7 N -0.68 -18.45 5.50 -468.14 -2.57 -21.02 16 8 C 0.52 17.45 7.89 87.27 0.69 18.14 16 9 O -0.54 -20.53 16.50 -3.24 -0.05 -20.59 16 10 C 0.50 18.82 7.88 87.27 0.69 19.51 16 11 O -0.55 -21.96 16.47 -3.26 -0.05 -22.02 16 12 N -0.67 -26.74 5.46 -464.42 -2.54 -29.28 16 13 C 0.15 6.33 5.08 86.38 0.44 6.76 16 14 C -0.05 -2.12 0.85 -52.93 -0.04 -2.16 16 15 C -0.48 -25.90 9.19 25.60 0.24 -25.67 16 16 H 0.04 2.50 8.06 -2.91 -0.02 2.47 16 17 C 0.03 1.61 5.46 84.65 0.46 2.07 16 18 N -0.94 -58.33 13.96 21.45 0.30 -58.03 16 19 Si 0.92 44.40 24.69 68.60 1.69 46.09 16 20 H -0.29 -14.20 6.96 99.48 0.69 -13.51 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.22 -9.35 6.11 99.48 0.61 -8.74 16 23 C -0.16 -5.52 9.96 30.62 0.30 -5.22 16 24 C -0.18 -6.48 8.69 30.62 0.27 -6.21 16 25 C -0.11 -1.71 5.90 -19.77 -0.12 -1.83 16 26 C -0.12 -1.38 9.21 71.24 0.66 -0.72 16 27 C -0.08 -1.03 9.55 22.47 0.21 -0.81 16 28 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 29 H 0.08 0.37 8.09 -2.39 -0.02 0.35 16 30 H 0.08 0.30 8.10 -2.39 -0.02 0.28 16 31 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 32 H 0.11 2.15 6.69 -2.39 -0.02 2.14 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.42 10.73 7.95 -92.71 -0.74 10.00 16 35 H 0.42 17.08 7.83 -92.71 -0.73 16.36 16 36 H 0.04 1.80 4.27 -2.39 -0.01 1.79 16 37 H 0.08 2.98 8.06 -2.39 -0.02 2.96 16 38 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.10 3.14 8.14 -2.39 -0.02 3.13 16 42 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 0.73 8.10 -2.39 -0.02 0.71 16 45 H 0.06 0.93 6.68 -2.38 -0.02 0.91 16 46 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -72.16 386.02 0.35 -71.82 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -0.55 Total: 35.62 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 6.01 Total: 10.88 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -6.70 Total: -121.81 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.11 Total: -42.60 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.69 Total: 46.09 kcal Total: -72.16 0.35 -71.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334950409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.528 kcal (2) G-P(sol) polarization free energy of solvation -72.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds