Wall clock time and date at job start Tue Mar 31 2020 17:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38672 * 120.79252 * 2 1 4 4 C 1.38187 * 119.16370 * 180.02562 * 3 2 1 5 5 N 1.31883 * 120.76495 * 0.02562 * 4 3 2 6 6 C 1.31862 * 121.72483 * 359.68405 * 5 4 3 7 7 C 1.38219 * 120.76246 * 0.58350 * 6 5 4 8 8 C 1.50696 * 120.41875 * 179.73043 * 7 6 5 9 9 C 1.53010 * 109.47151 * 264.72043 * 8 7 6 10 10 N 1.46496 * 109.46871 * 180.02562 * 9 8 7 11 11 C 1.34782 * 119.99553 * 180.02562 * 10 9 8 12 12 O 1.21346 * 120.00156 * 359.97438 * 11 10 9 13 13 C 1.49444 * 120.00009 * 179.97438 * 11 10 9 14 14 O 1.21356 * 119.99965 * 354.48392 * 13 11 10 15 15 N 1.34773 * 120.00443 * 174.48297 * 13 11 10 16 16 C 1.46500 * 120.00250 * 185.59013 * 15 13 11 17 17 C 1.53008 * 109.46729 * 185.19701 * 16 15 13 18 18 C 1.50701 * 115.55174 * 57.84350 * 17 16 15 19 19 H 1.08006 * 119.99524 * 264.65397 * 18 17 16 20 20 C 1.37866 * 120.00101 * 84.64768 * 18 17 16 21 21 N 1.31518 * 120.00270 * 1.97084 * 20 18 17 22 22 Si 1.86800 * 120.00008 * 181.96847 * 20 18 17 23 23 H 1.48504 * 109.47180 * 90.00076 * 22 20 18 24 24 H 1.48503 * 109.47549 * 210.00015 * 22 20 18 25 25 H 1.48504 * 109.47270 * 330.00509 * 22 20 18 26 26 C 1.52999 * 117.49989 * 272.16471 * 17 16 15 27 27 C 1.53000 * 117.49451 * 203.50690 * 17 16 15 28 28 H 1.09000 * 109.46985 * 269.98357 * 1 2 3 29 29 H 1.09006 * 109.46583 * 29.97818 * 1 2 3 30 30 H 1.08997 * 109.47073 * 149.97886 * 1 2 3 31 31 H 1.07994 * 120.41666 * 359.97438 * 3 2 1 32 32 H 1.07994 * 119.61665 * 180.02562 * 4 3 2 33 33 H 1.07994 * 119.61272 * 180.28686 * 6 5 4 34 34 H 1.09004 * 109.47743 * 144.71933 * 8 7 6 35 35 H 1.08998 * 109.47231 * 24.72130 * 8 7 6 36 36 H 1.08994 * 109.46529 * 59.99766 * 9 8 7 37 37 H 1.09002 * 109.46852 * 299.99717 * 9 8 7 38 38 H 0.96997 * 120.00702 * 359.97438 * 10 9 8 39 39 H 0.97006 * 119.99739 * 5.59781 * 15 13 11 40 40 H 1.08996 * 109.47417 * 305.19563 * 16 15 13 41 41 H 1.08999 * 109.46835 * 65.20350 * 16 15 13 42 42 H 0.97006 * 119.99794 * 185.01299 * 21 20 18 43 43 H 1.09003 * 117.49668 * 0.02562 * 26 17 16 44 44 H 1.08998 * 117.49752 * 145.02293 * 26 17 16 45 45 H 1.09002 * 117.49810 * 214.98119 * 27 17 16 46 46 H 1.09003 * 117.50236 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 -0.0005 5 7 4.2403 0.0000 -0.0016 6 6 3.5983 -1.1517 0.0041 7 6 2.2167 -1.1909 -0.0008 8 6 1.4908 -2.5116 -0.0004 9 6 1.1340 -2.8979 -1.4372 10 7 0.4278 -4.1814 -1.4367 11 6 0.0136 -4.7231 -2.5994 12 8 0.2252 -4.1474 -3.6464 13 6 -0.7062 -6.0327 -2.5990 14 8 -0.8300 -6.6568 -1.5656 15 7 -1.2179 -6.5208 -3.7463 16 6 -2.0281 -7.7413 -3.7263 17 6 -2.3735 -8.1476 -5.1604 18 6 -1.1958 -8.3853 -6.0702 19 1 -0.8412 -7.5927 -6.7126 20 6 -0.5712 -9.6143 -6.0825 21 7 -1.0268 -10.5911 -5.3289 22 14 0.9224 -9.8920 -7.1695 23 1 2.1546 -9.5509 -6.4142 24 1 0.9747 -11.3170 -7.5843 25 1 0.8254 -9.0290 -8.3740 26 6 -3.6354 -7.5448 -5.7810 27 6 -3.6140 -9.0187 -5.3684 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8903 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6968 2.1377 -0.0004 32 1 4.1584 2.0753 -0.0001 33 1 4.1585 -2.0750 0.0077 34 1 0.5785 -2.4247 0.5897 35 1 2.1323 -3.2786 0.4334 36 1 2.0463 -2.9848 -2.0272 37 1 0.4924 -2.1308 -1.8710 38 1 0.2590 -4.6419 -0.5999 39 1 -1.0498 -6.0640 -4.5854 40 1 -1.4659 -8.5427 -3.2470 41 1 -2.9469 -7.5583 -3.1692 42 1 -0.5457 -11.4321 -5.2818 43 1 -4.2192 -6.8584 -5.1677 44 1 -3.6139 -7.3204 -6.8474 45 1 -3.5784 -9.7634 -6.1636 46 1 -4.1838 -9.3027 -4.4836 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350844315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:41 Heat of formation + Delta-G solvation = -23.909885 kcal Electronic energy + Delta-G solvation = -27062.678178 eV Core-core repulsion = 23145.643685 eV Total energy + Delta-G solvation = -3917.034493 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80949 -40.20779 -38.26364 -36.73330 -36.19523 -34.40645 -33.40715 -32.65591 -31.98970 -29.47080 -28.19964 -27.04446 -25.52771 -24.70365 -23.06056 -22.47289 -21.59770 -21.18451 -19.91908 -19.51987 -18.06679 -17.21463 -16.83924 -16.64893 -16.10798 -15.80919 -15.63964 -15.14725 -14.82643 -14.70382 -14.61966 -14.39004 -13.87298 -13.69260 -13.63015 -13.27701 -13.06874 -13.00803 -12.87242 -12.74236 -12.44102 -11.97840 -11.86543 -11.63394 -11.62530 -11.33020 -10.99830 -10.93428 -10.53974 -10.27528 -9.81828 -9.79523 -9.65172 -9.38588 -9.29919 -9.21584 -9.09058 -8.54384 -8.44111 -8.14208 -6.10579 -4.19624 0.71106 0.86965 1.76489 2.63008 3.27061 3.34374 3.37020 3.40409 3.58250 3.94243 4.12894 4.28683 4.33037 4.35770 4.45899 4.52716 4.63791 4.86104 4.91673 4.99353 5.08846 5.12832 5.18530 5.23621 5.31239 5.38101 5.41431 5.56668 5.69033 5.74623 5.94544 5.96093 6.16077 6.25017 6.34239 6.37998 6.43238 6.65220 6.73503 6.98147 7.06063 7.17732 7.32292 7.46788 7.62659 7.79703 7.82445 8.12972 8.29332 8.52626 8.82499 9.48464 10.97435 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018321 B = 0.002171 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.906922 B =12893.521997 C =13647.057682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.034 4.034 3 C -0.174 4.174 4 C 0.098 3.902 5 N -0.488 5.488 6 C 0.110 3.890 7 C -0.135 4.135 8 C -0.090 4.090 9 C 0.123 3.877 10 N -0.709 5.709 11 C 0.509 3.491 12 O -0.518 6.518 13 C 0.495 3.505 14 O -0.540 6.540 15 N -0.663 5.663 16 C 0.159 3.841 17 C 0.021 3.979 18 C -0.499 4.499 19 H 0.062 0.938 20 C 0.074 3.926 21 N -0.875 5.875 22 Si 0.890 3.110 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.211 4.211 27 C -0.141 4.141 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.135 0.865 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.413 0.587 39 H 0.414 0.586 40 H 0.078 0.922 41 H 0.043 0.957 42 H 0.262 0.738 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.202 20.426 12.897 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.042 4.042 3 C -0.193 4.193 4 C -0.059 4.059 5 N -0.197 5.197 6 C -0.047 4.047 7 C -0.137 4.137 8 C -0.128 4.128 9 C -0.001 4.001 10 N -0.364 5.364 11 C 0.290 3.710 12 O -0.392 6.392 13 C 0.275 3.725 14 O -0.419 6.419 15 N -0.313 5.313 16 C 0.036 3.964 17 C 0.021 3.979 18 C -0.537 4.537 19 H 0.080 0.920 20 C -0.130 4.130 21 N -0.511 5.511 22 Si 0.717 3.283 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.248 4.248 27 C -0.179 4.179 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.152 0.848 32 H 0.172 0.828 33 H 0.174 0.826 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.249 0.751 39 H 0.250 0.750 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.142 20.171 12.826 24.260 hybrid contribution 0.014 -0.221 -0.515 0.560 sum 4.156 19.951 12.312 23.809 Atomic orbital electron populations 1.20945 0.90123 1.03910 1.03116 1.20259 0.96859 0.92464 0.94662 1.22054 0.95643 0.98641 1.03007 1.22772 0.91807 0.96321 0.94957 1.67714 1.41188 0.98489 1.12282 1.22748 0.90969 0.96454 0.94557 1.20541 0.95092 0.94976 1.03109 1.20721 1.01233 0.94080 0.96768 1.21390 0.97506 0.84869 0.96308 1.45715 1.58162 1.22728 1.09769 1.20518 0.79868 0.86572 0.84035 1.90760 1.54940 1.62410 1.31140 1.19880 0.81262 0.86135 0.85260 1.90716 1.59085 1.60000 1.32118 1.45829 1.49161 1.27278 1.09000 1.21174 0.92311 0.84489 0.98389 1.19036 0.88595 0.99073 0.91238 1.20365 1.13439 0.97343 1.22531 0.92035 1.24976 0.97010 0.95594 0.95444 1.69989 1.37855 1.04242 1.39031 0.86629 0.83209 0.77416 0.81045 1.20572 1.21195 1.19735 1.23064 1.04867 0.96687 1.00178 1.22477 1.02090 0.91944 1.01435 0.90260 0.90788 0.90431 0.84754 0.82788 0.82615 0.89561 0.89422 0.90748 0.90896 0.75111 0.74994 0.90338 0.93896 0.92858 0.91597 0.90210 0.89473 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.31 36.01 0.34 -0.35 16 2 C -0.03 -0.25 5.92 -104.31 -0.62 -0.87 16 3 C -0.17 -1.20 9.82 -39.44 -0.39 -1.58 16 4 C 0.10 0.77 11.18 -17.55 -0.20 0.58 16 5 N -0.49 -4.88 10.36 -13.26 -0.14 -5.02 16 6 C 0.11 0.96 10.84 -17.55 -0.19 0.77 16 7 C -0.13 -1.05 5.15 -104.48 -0.54 -1.59 16 8 C -0.09 -0.60 4.79 -27.88 -0.13 -0.74 16 9 C 0.12 1.16 5.49 -4.04 -0.02 1.14 16 10 N -0.71 -8.27 5.55 -60.73 -0.34 -8.61 16 11 C 0.51 8.10 7.89 -11.59 -0.09 8.01 16 12 O -0.52 -9.38 16.49 5.50 0.09 -9.29 16 13 C 0.50 9.17 7.88 -11.59 -0.09 9.08 16 14 O -0.54 -10.81 16.46 5.49 0.09 -10.72 16 15 N -0.66 -13.19 5.37 -60.73 -0.33 -13.51 16 16 C 0.16 3.48 5.57 -4.04 -0.02 3.45 16 17 C 0.02 0.49 1.51 -155.66 -0.23 0.26 16 18 C -0.50 -12.88 8.38 -34.44 -0.29 -13.16 16 19 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 20 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 21 N -0.88 -24.05 12.72 55.43 0.71 -23.34 16 22 Si 0.89 20.82 29.54 -169.99 -5.02 15.79 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.21 -4.32 9.94 -26.69 -0.27 -4.59 16 27 C -0.14 -3.16 9.26 -26.69 -0.25 -3.40 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 30 H 0.08 0.46 5.64 -51.93 -0.29 0.17 16 31 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 32 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.09 0.49 7.10 -51.93 -0.37 0.12 16 35 H 0.09 0.51 8.06 -51.93 -0.42 0.09 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.71 6.97 -51.93 -0.36 0.35 16 38 H 0.41 4.21 7.96 -40.82 -0.32 3.89 16 39 H 0.41 8.16 7.73 -40.82 -0.32 7.85 16 40 H 0.08 1.95 8.09 -51.93 -0.42 1.53 16 41 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 42 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 45 H 0.09 2.10 8.14 -51.93 -0.42 1.67 16 46 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 393.08 15.07 5.92 5.92 Total: -1.00 -31.19 393.08 -8.79 -39.98 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.69 Total: 9.92 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -3.09 Total: -1.13 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.09 Total: -50.49 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.18 Total: -20.01 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.19 -8.79 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350844315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.071 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds