Wall clock time and date at job start Tue Mar 31 2020 17:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38672 * 120.79252 * 2 1 4 4 C 1.38187 * 119.16370 * 180.02562 * 3 2 1 5 5 N 1.31883 * 120.76495 * 0.02562 * 4 3 2 6 6 C 1.31862 * 121.72483 * 359.68405 * 5 4 3 7 7 C 1.38219 * 120.76246 * 0.58350 * 6 5 4 8 8 C 1.50696 * 120.41875 * 179.73043 * 7 6 5 9 9 C 1.53010 * 109.47151 * 264.72043 * 8 7 6 10 10 N 1.46496 * 109.46871 * 180.02562 * 9 8 7 11 11 C 1.34782 * 119.99553 * 180.02562 * 10 9 8 12 12 O 1.21346 * 120.00156 * 359.97438 * 11 10 9 13 13 C 1.49444 * 120.00009 * 179.97438 * 11 10 9 14 14 O 1.21356 * 119.99965 * 354.48392 * 13 11 10 15 15 N 1.34773 * 120.00443 * 174.48297 * 13 11 10 16 16 C 1.46500 * 120.00250 * 185.59013 * 15 13 11 17 17 C 1.53008 * 109.46729 * 185.19701 * 16 15 13 18 18 C 1.50701 * 115.55174 * 57.84350 * 17 16 15 19 19 H 1.08006 * 119.99524 * 264.65397 * 18 17 16 20 20 C 1.37866 * 120.00101 * 84.64768 * 18 17 16 21 21 N 1.31518 * 120.00270 * 1.97084 * 20 18 17 22 22 Si 1.86800 * 120.00008 * 181.96847 * 20 18 17 23 23 H 1.48504 * 109.47180 * 90.00076 * 22 20 18 24 24 H 1.48503 * 109.47549 * 210.00015 * 22 20 18 25 25 H 1.48504 * 109.47270 * 330.00509 * 22 20 18 26 26 C 1.52999 * 117.49989 * 272.16471 * 17 16 15 27 27 C 1.53000 * 117.49451 * 203.50690 * 17 16 15 28 28 H 1.09000 * 109.46985 * 269.98357 * 1 2 3 29 29 H 1.09006 * 109.46583 * 29.97818 * 1 2 3 30 30 H 1.08997 * 109.47073 * 149.97886 * 1 2 3 31 31 H 1.07994 * 120.41666 * 359.97438 * 3 2 1 32 32 H 1.07994 * 119.61665 * 180.02562 * 4 3 2 33 33 H 1.07994 * 119.61272 * 180.28686 * 6 5 4 34 34 H 1.09004 * 109.47743 * 144.71933 * 8 7 6 35 35 H 1.08998 * 109.47231 * 24.72130 * 8 7 6 36 36 H 1.08994 * 109.46529 * 59.99766 * 9 8 7 37 37 H 1.09002 * 109.46852 * 299.99717 * 9 8 7 38 38 H 0.96997 * 120.00702 * 359.97438 * 10 9 8 39 39 H 0.97006 * 119.99739 * 5.59781 * 15 13 11 40 40 H 1.08996 * 109.47417 * 305.19563 * 16 15 13 41 41 H 1.08999 * 109.46835 * 65.20350 * 16 15 13 42 42 H 0.97006 * 119.99794 * 185.01299 * 21 20 18 43 43 H 1.09003 * 117.49668 * 0.02562 * 26 17 16 44 44 H 1.08998 * 117.49752 * 145.02293 * 26 17 16 45 45 H 1.09002 * 117.49810 * 214.98119 * 27 17 16 46 46 H 1.09003 * 117.50236 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 -0.0005 5 7 4.2403 0.0000 -0.0016 6 6 3.5983 -1.1517 0.0041 7 6 2.2167 -1.1909 -0.0008 8 6 1.4908 -2.5116 -0.0004 9 6 1.1340 -2.8979 -1.4372 10 7 0.4278 -4.1814 -1.4367 11 6 0.0136 -4.7231 -2.5994 12 8 0.2252 -4.1474 -3.6464 13 6 -0.7062 -6.0327 -2.5990 14 8 -0.8300 -6.6568 -1.5656 15 7 -1.2179 -6.5208 -3.7463 16 6 -2.0281 -7.7413 -3.7263 17 6 -2.3735 -8.1476 -5.1604 18 6 -1.1958 -8.3853 -6.0702 19 1 -0.8412 -7.5927 -6.7126 20 6 -0.5712 -9.6143 -6.0825 21 7 -1.0268 -10.5911 -5.3289 22 14 0.9224 -9.8920 -7.1695 23 1 2.1546 -9.5509 -6.4142 24 1 0.9747 -11.3170 -7.5843 25 1 0.8254 -9.0290 -8.3740 26 6 -3.6354 -7.5448 -5.7810 27 6 -3.6140 -9.0187 -5.3684 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8903 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6968 2.1377 -0.0004 32 1 4.1584 2.0753 -0.0001 33 1 4.1585 -2.0750 0.0077 34 1 0.5785 -2.4247 0.5897 35 1 2.1323 -3.2786 0.4334 36 1 2.0463 -2.9848 -2.0272 37 1 0.4924 -2.1308 -1.8710 38 1 0.2590 -4.6419 -0.5999 39 1 -1.0498 -6.0640 -4.5854 40 1 -1.4659 -8.5427 -3.2470 41 1 -2.9469 -7.5583 -3.1692 42 1 -0.5457 -11.4321 -5.2818 43 1 -4.2192 -6.8584 -5.1677 44 1 -3.6139 -7.3204 -6.8474 45 1 -3.5784 -9.7634 -6.1636 46 1 -4.1838 -9.3027 -4.4836 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350844315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:41 Heat of formation + Delta-G solvation = -44.475119 kcal Electronic energy + Delta-G solvation = -27063.569954 eV Core-core repulsion = 23145.643685 eV Total energy + Delta-G solvation = -3917.926268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69039 -41.25392 -39.68929 -38.45263 -37.09263 -35.32775 -34.75534 -33.97560 -33.37396 -30.21911 -28.86939 -28.48840 -27.41073 -25.73860 -23.92788 -23.32304 -22.89272 -22.24453 -21.41927 -21.10590 -19.52442 -18.09258 -17.84876 -17.80485 -17.28413 -17.04197 -16.73347 -16.63114 -16.19232 -15.89129 -15.78085 -15.48229 -15.05705 -14.90242 -14.53554 -14.42824 -14.25175 -13.73865 -13.72124 -13.55936 -13.48750 -13.37545 -13.12835 -12.94126 -12.85635 -12.76795 -12.49317 -12.38257 -12.17724 -12.00797 -11.43559 -10.98691 -10.75990 -10.43291 -10.38373 -10.34408 -10.33505 -10.17230 -9.92355 -9.87440 -8.12267 -6.24649 0.14056 0.31249 0.39135 1.38919 1.39798 1.43006 1.50412 2.18220 2.41032 2.70144 2.84203 3.16668 3.42632 3.56810 3.61654 3.78967 3.81404 3.90236 3.93052 4.03536 4.21922 4.28686 4.41730 4.52029 4.59590 4.64675 4.67079 4.67972 4.77206 4.80474 4.88023 4.94541 4.97501 5.03476 5.13864 5.14428 5.25712 5.29580 5.37509 5.43536 5.55137 5.68291 5.76231 5.81298 6.00105 6.35225 6.47919 6.79072 6.82564 7.02433 7.04879 7.45106 8.95167 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018321 B = 0.002171 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.906922 B =12893.521997 C =13647.057682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.042 4.042 3 C -0.174 4.174 4 C 0.085 3.915 5 N -0.521 5.521 6 C 0.093 3.907 7 C -0.140 4.140 8 C -0.079 4.079 9 C 0.124 3.876 10 N -0.686 5.686 11 C 0.515 3.485 12 O -0.542 6.542 13 C 0.495 3.505 14 O -0.556 6.556 15 N -0.668 5.668 16 C 0.174 3.826 17 C -0.005 4.005 18 C -0.504 4.504 19 H 0.057 0.943 20 C 0.028 3.972 21 N -0.903 5.903 22 Si 0.943 3.057 23 H -0.282 1.282 24 H -0.286 1.286 25 H -0.267 1.267 26 C -0.181 4.181 27 C -0.148 4.148 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.159 0.841 32 H 0.174 0.826 33 H 0.164 0.836 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.422 0.578 39 H 0.414 0.586 40 H 0.042 0.958 41 H 0.058 0.942 42 H 0.259 0.741 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.758 22.369 13.607 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.050 4.050 3 C -0.194 4.194 4 C -0.071 4.071 5 N -0.230 5.230 6 C -0.064 4.064 7 C -0.143 4.143 8 C -0.117 4.117 9 C 0.001 3.999 10 N -0.340 5.340 11 C 0.295 3.705 12 O -0.420 6.420 13 C 0.276 3.724 14 O -0.436 6.436 15 N -0.317 5.317 16 C 0.050 3.950 17 C -0.006 4.006 18 C -0.542 4.542 19 H 0.075 0.925 20 C -0.173 4.173 21 N -0.540 5.540 22 Si 0.769 3.231 23 H -0.208 1.208 24 H -0.212 1.212 25 H -0.192 1.192 26 C -0.218 4.218 27 C -0.186 4.186 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.177 0.823 32 H 0.191 0.809 33 H 0.181 0.819 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.260 0.740 39 H 0.251 0.749 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.707 22.138 13.567 26.228 hybrid contribution 0.152 -0.743 -0.686 1.023 sum 3.859 21.395 12.880 25.270 Atomic orbital electron populations 1.20983 0.88744 1.04214 1.03987 1.20587 0.97942 0.92462 0.94004 1.22347 0.95357 0.99667 1.02012 1.23190 0.92724 0.96504 0.94688 1.67700 1.42326 0.99409 1.13571 1.22978 0.91725 0.96630 0.95034 1.20603 0.94780 0.95587 1.03330 1.20655 1.02122 0.93949 0.94960 1.21526 0.96714 0.83430 0.98216 1.45662 1.56453 1.23059 1.08803 1.19991 0.80082 0.85543 0.84880 1.90758 1.56322 1.62729 1.32160 1.20338 0.80696 0.86924 0.84471 1.90703 1.59574 1.60784 1.32539 1.45766 1.49562 1.26792 1.09626 1.20822 0.92541 0.84281 0.97343 1.19096 0.88677 1.00998 0.91780 1.20636 1.14135 0.96976 1.22451 0.92500 1.25612 0.99324 0.95712 0.96635 1.70086 1.38891 1.04481 1.40563 0.85794 0.80401 0.77186 0.79722 1.20808 1.21175 1.19157 1.23059 1.02513 0.95639 1.00550 1.22400 1.02179 0.92657 1.01380 0.89011 0.89850 0.90777 0.82330 0.80920 0.81897 0.87906 0.88281 0.91702 0.90772 0.73996 0.74898 0.93956 0.92384 0.93158 0.88798 0.90051 0.91836 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.31 71.24 0.66 -0.37 16 2 C -0.04 -0.53 5.92 -19.67 -0.12 -0.65 16 3 C -0.17 -2.06 9.82 22.36 0.22 -1.85 16 4 C 0.08 1.25 11.18 84.67 0.95 2.20 16 5 N -0.52 -10.18 10.36 -195.85 -2.03 -12.20 16 6 C 0.09 1.57 10.84 84.68 0.92 2.49 16 7 C -0.14 -1.97 5.15 -19.78 -0.10 -2.07 16 8 C -0.08 -0.89 4.79 29.85 0.14 -0.74 16 9 C 0.12 2.12 5.49 86.38 0.47 2.60 16 10 N -0.69 -14.79 5.55 -464.41 -2.58 -17.37 16 11 C 0.51 15.81 7.89 87.27 0.69 16.49 16 12 O -0.54 -19.17 16.49 -3.23 -0.05 -19.22 16 13 C 0.50 17.99 7.88 87.27 0.69 18.68 16 14 O -0.56 -21.88 16.46 -3.26 -0.05 -21.93 16 15 N -0.67 -26.28 5.37 -464.41 -2.49 -28.77 16 16 C 0.17 7.56 5.57 86.38 0.48 8.04 16 17 C 0.00 -0.22 1.51 -52.92 -0.08 -0.30 16 18 C -0.50 -26.05 8.38 25.60 0.21 -25.84 16 19 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 20 C 0.03 1.50 5.43 84.65 0.46 1.96 16 21 N -0.90 -50.43 12.72 21.44 0.27 -50.16 16 22 Si 0.94 43.03 29.54 68.60 2.03 45.06 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 C -0.18 -7.07 9.94 30.62 0.30 -6.77 16 27 C -0.15 -6.54 9.26 30.62 0.28 -6.26 16 28 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.56 8.10 -2.38 -0.02 0.54 16 30 H 0.07 0.69 5.64 -2.39 -0.01 0.67 16 31 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 32 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.10 0.85 7.10 -2.38 -0.02 0.83 16 35 H 0.10 0.92 8.06 -2.39 -0.02 0.90 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.31 6.97 -2.39 -0.02 1.30 16 38 H 0.42 7.70 7.96 -92.71 -0.74 6.97 16 39 H 0.41 16.19 7.73 -92.70 -0.72 15.47 16 40 H 0.04 2.14 8.09 -2.39 -0.02 2.12 16 41 H 0.06 2.32 8.11 -2.39 -0.02 2.30 16 42 H 0.26 14.01 8.32 -92.70 -0.77 13.24 16 43 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 46 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -67.02 393.08 0.84 -66.18 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: -0.44 Total: 30.82 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.19 Total: 7.60 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -6.83 Total: -108.50 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.11 Total: -41.16 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -67.02 0.84 -66.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350844315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.700 kcal (2) G-P(sol) polarization free energy of solvation -67.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds