Wall clock time and date at job start Tue Mar 31 2020 16:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38667 * 120.42071 * 2 1 4 4 C 1.38633 * 118.41994 * 179.75492 * 3 2 1 5 5 C 1.38224 * 119.16251 * 0.50073 * 4 3 2 6 6 C 1.50693 * 119.62000 * 179.75825 * 5 4 3 7 7 N 1.46502 * 109.47256 * 94.73186 * 6 5 4 8 8 C 1.34782 * 120.00166 * 180.02562 * 7 6 5 9 9 O 1.21350 * 119.99528 * 359.97438 * 8 7 6 10 10 C 1.49446 * 120.00084 * 179.97438 * 8 7 6 11 11 O 1.21356 * 119.99803 * 353.37756 * 10 8 7 12 12 N 1.34768 * 120.00057 * 173.37736 * 10 8 7 13 13 C 1.46923 * 120.63140 * 353.06161 * 12 10 8 14 14 C 1.53197 * 108.77603 * 126.41596 * 13 12 10 15 15 C 1.53036 * 109.34037 * 54.62030 * 14 13 12 16 16 C 1.53043 * 109.53781 * 298.68543 * 15 14 13 17 17 H 1.09000 * 109.49772 * 301.34791 * 16 15 14 18 18 C 1.50699 * 109.49861 * 181.28187 * 16 15 14 19 19 H 1.08009 * 119.99826 * 0.06421 * 18 16 15 20 20 C 1.37874 * 120.00391 * 180.34183 * 18 16 15 21 21 N 1.31511 * 119.99935 * 359.72505 * 20 18 16 22 22 Si 1.86803 * 120.00371 * 179.72468 * 20 18 16 23 23 H 1.48501 * 109.46987 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47049 * 119.99668 * 22 20 18 25 25 H 1.48495 * 109.47162 * 239.99991 * 22 20 18 26 26 C 1.46927 * 120.63303 * 173.08900 * 12 10 8 27 27 N 1.31855 * 120.76026 * 359.48710 * 5 4 3 28 28 C 1.31885 * 121.72791 * 0.27067 * 27 5 4 29 29 H 1.08997 * 109.47694 * 269.98433 * 1 2 3 30 30 H 1.09000 * 109.46717 * 29.98540 * 1 2 3 31 31 H 1.09008 * 109.47295 * 149.97603 * 1 2 3 32 32 H 1.07998 * 120.78787 * 0.03928 * 3 2 1 33 33 H 1.08007 * 120.41908 * 180.28219 * 4 3 2 34 34 H 1.09007 * 109.47437 * 334.72973 * 6 5 4 35 35 H 1.09010 * 109.47462 * 214.72995 * 6 5 4 36 36 H 0.96996 * 120.00059 * 359.97438 * 7 6 5 37 37 H 1.08998 * 109.59171 * 246.19792 * 13 12 10 38 38 H 1.09003 * 109.58922 * 6.48999 * 13 12 10 39 39 H 1.08995 * 109.50150 * 174.58993 * 14 13 12 40 40 H 1.09009 * 109.49617 * 294.68452 * 14 13 12 41 41 H 1.08997 * 109.49188 * 178.64856 * 15 14 13 42 42 H 1.09001 * 109.43006 * 58.68768 * 15 14 13 43 43 H 0.97000 * 120.00590 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.59192 * 113.79627 * 26 12 10 45 45 H 1.08998 * 109.70190 * 353.44355 * 26 12 10 46 46 H 1.08000 * 119.62016 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1474 0.0052 5 6 4.2256 -0.0824 -0.0003 6 6 5.7312 -0.1470 -0.0003 7 7 6.2139 -0.2882 1.3757 8 6 7.5369 -0.3659 1.6212 9 8 8.3281 -0.3194 0.7023 10 6 8.0293 -0.5093 3.0249 11 8 7.2496 -0.4352 3.9519 12 7 9.3391 -0.7209 3.2612 13 6 10.2704 -0.9639 2.1511 14 6 11.4326 0.0286 2.2561 15 6 12.0676 -0.0796 3.6443 16 6 11.0296 0.2762 4.7112 17 1 10.6611 1.2872 4.5373 18 6 11.6644 0.1999 6.0758 19 1 12.7046 -0.0739 6.1730 20 6 10.9158 0.4741 7.2007 21 7 9.6491 0.8075 7.0825 22 14 11.7006 0.3720 8.8928 23 1 13.1259 -0.0214 8.7544 24 1 11.6145 1.6963 9.5591 25 1 10.9853 -0.6408 9.7099 26 6 9.8629 -0.7136 4.6339 27 7 3.5254 -1.1997 -0.0003 28 6 2.2066 -1.1917 -0.0004 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6890 2.1422 0.0006 33 1 4.1736 2.0591 0.0100 34 1 6.1342 0.7680 -0.4347 35 1 6.0582 -1.0037 -0.5897 36 1 5.5814 -0.3249 2.1102 37 1 10.6534 -1.9826 2.2117 38 1 9.7524 -0.8241 1.2022 39 1 12.1785 -0.2027 1.4958 40 1 11.0604 1.0420 2.1048 41 1 12.9100 0.6085 3.7136 42 1 12.4179 -1.0993 3.8043 43 1 9.1225 1.0007 7.8738 44 1 10.2126 -1.7119 4.8970 45 1 9.0777 -0.4075 5.3252 46 1 1.6671 -2.1273 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350874176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:26 Heat of formation + Delta-G solvation = -25.641285 kcal Electronic energy + Delta-G solvation = -27857.649175 eV Core-core repulsion = 23940.539603 eV Total energy + Delta-G solvation = -3917.109572 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84988 -40.30513 -38.26615 -36.84022 -35.53088 -33.73028 -33.17728 -32.30715 -31.69293 -29.71988 -29.14577 -26.36550 -25.20037 -24.87757 -23.87545 -22.51501 -21.76713 -21.64699 -20.23578 -18.85611 -17.52001 -17.08315 -16.66993 -16.46401 -15.97543 -15.65010 -15.46194 -15.28786 -14.70401 -14.56267 -14.41113 -14.07398 -13.74791 -13.57076 -13.28047 -13.23855 -13.04520 -12.88437 -12.85162 -12.57799 -12.57724 -12.05052 -11.91349 -11.75850 -11.37828 -10.98986 -10.66875 -10.43209 -10.26783 -10.15318 -10.03628 -9.86962 -9.80958 -9.32217 -9.27969 -9.15481 -9.09962 -8.49934 -8.39705 -7.80107 -6.01259 -4.09241 0.60292 0.90895 1.80835 2.69791 3.29899 3.38238 3.41669 3.44011 3.66748 3.83441 4.05480 4.29032 4.39786 4.42608 4.53223 4.57841 4.73278 4.92735 5.13051 5.14179 5.22917 5.29429 5.40023 5.42384 5.56519 5.66724 5.72270 5.73719 5.86251 5.88687 6.07553 6.28130 6.30320 6.41758 6.62069 6.64119 6.77378 6.89110 7.01578 7.06862 7.20177 7.24447 7.60835 7.61433 7.84550 7.96710 8.00088 8.18584 8.36710 8.60068 8.95124 9.56299 11.04364 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.002469 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.527656 B =11337.915507 C =12472.954791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.132 4.132 3 C -0.078 4.078 4 C -0.145 4.145 5 C 0.099 3.901 6 C 0.172 3.828 7 N -0.697 5.697 8 C 0.515 3.485 9 O -0.513 6.513 10 C 0.496 3.504 11 O -0.524 6.524 12 N -0.566 5.566 13 C 0.050 3.950 14 C -0.127 4.127 15 C -0.113 4.113 16 C 0.040 3.960 17 H 0.029 0.971 18 C -0.518 4.518 19 H 0.060 0.940 20 C 0.061 3.939 21 N -0.883 5.883 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.108 3.892 27 N -0.464 5.464 28 C 0.099 3.901 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.414 0.586 37 H 0.054 0.946 38 H 0.144 0.856 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.263 0.737 44 H 0.048 0.952 45 H 0.123 0.877 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.976 -0.921 -17.190 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.134 4.134 3 C -0.104 4.104 4 C -0.165 4.165 5 C -0.038 4.038 6 C 0.048 3.952 7 N -0.351 5.351 8 C 0.297 3.703 9 O -0.391 6.391 10 C 0.277 3.723 11 O -0.402 6.402 12 N -0.298 5.298 13 C -0.072 4.072 14 C -0.165 4.165 15 C -0.151 4.151 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.556 4.556 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.521 5.521 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.012 4.012 27 N -0.172 5.172 28 C -0.059 4.059 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.250 0.750 37 H 0.073 0.927 38 H 0.160 0.840 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.141 0.859 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.501 -1.609 -17.231 23.233 hybrid contribution -0.324 0.764 1.364 1.597 sum -15.825 -0.846 -15.866 22.425 Atomic orbital electron populations 1.20751 0.90001 1.03243 1.02891 1.21030 0.97807 0.94295 1.00310 1.21529 0.93903 0.98402 0.96575 1.22063 0.95314 0.99082 1.00076 1.21115 0.95849 0.88873 0.97990 1.20164 0.87043 1.04000 0.84011 1.45756 1.07170 1.72928 1.09258 1.20790 0.82466 0.76410 0.90586 1.90306 1.52671 1.49490 1.46634 1.19701 0.84100 0.80428 0.88092 1.90762 1.54499 1.50333 1.44577 1.48428 1.05596 1.65243 1.10544 1.23083 0.92317 0.98290 0.93499 1.21853 0.96932 0.99359 0.98389 1.21664 0.99059 1.00439 0.93925 1.18981 0.90717 0.94927 0.93274 0.95267 1.21140 0.96827 1.47320 0.90324 0.92182 1.25066 0.94913 0.94794 0.99358 1.69880 1.06700 1.45978 1.29500 0.86513 0.79471 0.77669 0.84231 1.19760 1.21008 1.20964 1.22485 1.00631 0.99413 0.78633 1.67489 1.08354 1.30874 1.10501 1.22699 0.89502 0.97687 0.95984 0.90592 0.91212 0.91010 0.84516 0.84232 0.89256 0.89132 0.74973 0.92718 0.83984 0.92273 0.92345 0.93083 0.93253 0.92707 0.93381 0.85888 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.04 36.00 0.36 -0.13 16 2 C -0.13 -0.96 5.90 -104.48 -0.62 -1.58 16 3 C -0.08 -0.57 9.86 -39.28 -0.39 -0.96 16 4 C -0.15 -1.23 9.72 -39.44 -0.38 -1.62 16 5 C 0.10 1.03 6.15 -82.59 -0.51 0.52 16 6 C 0.17 1.89 5.98 -5.20 -0.03 1.86 16 7 N -0.70 -9.60 5.54 -61.90 -0.34 -9.94 16 8 C 0.51 8.69 7.78 -11.58 -0.09 8.60 16 9 O -0.51 -8.83 13.10 5.50 0.07 -8.75 16 10 C 0.50 10.26 7.74 -11.59 -0.09 10.17 16 11 O -0.52 -12.24 15.95 5.49 0.09 -12.15 16 12 N -0.57 -12.08 2.97 -173.27 -0.51 -12.59 16 13 C 0.05 0.91 6.27 -3.71 -0.02 0.88 16 14 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 15 C -0.11 -2.36 5.11 -26.69 -0.14 -2.50 16 16 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 17 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 18 C -0.52 -14.13 8.57 -34.44 -0.30 -14.43 16 19 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 21 N -0.88 -25.63 11.38 55.43 0.63 -24.99 16 22 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.11 2.67 5.38 -3.71 -0.02 2.65 16 27 N -0.46 -5.17 10.27 -9.48 -0.10 -5.26 16 28 C 0.10 0.87 10.86 -17.55 -0.19 0.68 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.25 8.10 -51.93 -0.42 -0.17 16 31 H 0.07 0.25 8.09 -51.92 -0.42 -0.17 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 34 H 0.09 0.87 8.04 -51.93 -0.42 0.45 16 35 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 36 H 0.41 5.75 7.95 -40.82 -0.32 5.42 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.14 2.50 3.78 -56.75 -0.21 2.29 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.12 3.47 5.17 -51.93 -0.27 3.20 16 46 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -32.19 377.70 -9.05 -41.24 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.68 Total: 6.39 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -2.87 Total: 4.10 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.32 Total: -52.80 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.16 Total: -20.90 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.19 -9.05 -41.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350874176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.596 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds