Wall clock time and date at job start Tue Mar 31 2020 16:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38667 * 120.42071 * 2 1 4 4 C 1.38633 * 118.41994 * 179.75492 * 3 2 1 5 5 C 1.38224 * 119.16251 * 0.50073 * 4 3 2 6 6 C 1.50693 * 119.62000 * 179.75825 * 5 4 3 7 7 N 1.46502 * 109.47256 * 94.73186 * 6 5 4 8 8 C 1.34782 * 120.00166 * 180.02562 * 7 6 5 9 9 O 1.21350 * 119.99528 * 359.97438 * 8 7 6 10 10 C 1.49446 * 120.00084 * 179.97438 * 8 7 6 11 11 O 1.21356 * 119.99803 * 353.37756 * 10 8 7 12 12 N 1.34768 * 120.00057 * 173.37736 * 10 8 7 13 13 C 1.46923 * 120.63140 * 353.06161 * 12 10 8 14 14 C 1.53197 * 108.77603 * 126.41596 * 13 12 10 15 15 C 1.53036 * 109.34037 * 54.62030 * 14 13 12 16 16 C 1.53043 * 109.53781 * 298.68543 * 15 14 13 17 17 H 1.09000 * 109.49772 * 301.34791 * 16 15 14 18 18 C 1.50699 * 109.49861 * 181.28187 * 16 15 14 19 19 H 1.08009 * 119.99826 * 0.06421 * 18 16 15 20 20 C 1.37874 * 120.00391 * 180.34183 * 18 16 15 21 21 N 1.31511 * 119.99935 * 359.72505 * 20 18 16 22 22 Si 1.86803 * 120.00371 * 179.72468 * 20 18 16 23 23 H 1.48501 * 109.46987 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47049 * 119.99668 * 22 20 18 25 25 H 1.48495 * 109.47162 * 239.99991 * 22 20 18 26 26 C 1.46927 * 120.63303 * 173.08900 * 12 10 8 27 27 N 1.31855 * 120.76026 * 359.48710 * 5 4 3 28 28 C 1.31885 * 121.72791 * 0.27067 * 27 5 4 29 29 H 1.08997 * 109.47694 * 269.98433 * 1 2 3 30 30 H 1.09000 * 109.46717 * 29.98540 * 1 2 3 31 31 H 1.09008 * 109.47295 * 149.97603 * 1 2 3 32 32 H 1.07998 * 120.78787 * 0.03928 * 3 2 1 33 33 H 1.08007 * 120.41908 * 180.28219 * 4 3 2 34 34 H 1.09007 * 109.47437 * 334.72973 * 6 5 4 35 35 H 1.09010 * 109.47462 * 214.72995 * 6 5 4 36 36 H 0.96996 * 120.00059 * 359.97438 * 7 6 5 37 37 H 1.08998 * 109.59171 * 246.19792 * 13 12 10 38 38 H 1.09003 * 109.58922 * 6.48999 * 13 12 10 39 39 H 1.08995 * 109.50150 * 174.58993 * 14 13 12 40 40 H 1.09009 * 109.49617 * 294.68452 * 14 13 12 41 41 H 1.08997 * 109.49188 * 178.64856 * 15 14 13 42 42 H 1.09001 * 109.43006 * 58.68768 * 15 14 13 43 43 H 0.97000 * 120.00590 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.59192 * 113.79627 * 26 12 10 45 45 H 1.08998 * 109.70190 * 353.44355 * 26 12 10 46 46 H 1.08000 * 119.62016 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1474 0.0052 5 6 4.2256 -0.0824 -0.0003 6 6 5.7312 -0.1470 -0.0003 7 7 6.2139 -0.2882 1.3757 8 6 7.5369 -0.3659 1.6212 9 8 8.3281 -0.3194 0.7023 10 6 8.0293 -0.5093 3.0249 11 8 7.2496 -0.4352 3.9519 12 7 9.3391 -0.7209 3.2612 13 6 10.2704 -0.9639 2.1511 14 6 11.4326 0.0286 2.2561 15 6 12.0676 -0.0796 3.6443 16 6 11.0296 0.2762 4.7112 17 1 10.6611 1.2872 4.5373 18 6 11.6644 0.1999 6.0758 19 1 12.7046 -0.0739 6.1730 20 6 10.9158 0.4741 7.2007 21 7 9.6491 0.8075 7.0825 22 14 11.7006 0.3720 8.8928 23 1 13.1259 -0.0214 8.7544 24 1 11.6145 1.6963 9.5591 25 1 10.9853 -0.6408 9.7099 26 6 9.8629 -0.7136 4.6339 27 7 3.5254 -1.1997 -0.0003 28 6 2.2066 -1.1917 -0.0004 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6890 2.1422 0.0006 33 1 4.1736 2.0591 0.0100 34 1 6.1342 0.7680 -0.4347 35 1 6.0582 -1.0037 -0.5897 36 1 5.5814 -0.3249 2.1102 37 1 10.6534 -1.9826 2.2117 38 1 9.7524 -0.8241 1.2022 39 1 12.1785 -0.2027 1.4958 40 1 11.0604 1.0420 2.1048 41 1 12.9100 0.6085 3.7136 42 1 12.4179 -1.0993 3.8043 43 1 9.1225 1.0007 7.8738 44 1 10.2126 -1.7119 4.8970 45 1 9.0777 -0.4075 5.3252 46 1 1.6671 -2.1273 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350874176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:26 Heat of formation + Delta-G solvation = -47.074968 kcal Electronic energy + Delta-G solvation = -27858.578609 eV Core-core repulsion = 23940.539603 eV Total energy + Delta-G solvation = -3918.039006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.02869 -41.28628 -39.77661 -38.54597 -36.60504 -35.20941 -34.36072 -33.46292 -32.98731 -31.57029 -29.93804 -27.71543 -26.90518 -26.13671 -24.57688 -23.85428 -23.47739 -22.42161 -21.71151 -20.52411 -19.03475 -18.28340 -18.00079 -17.77458 -17.19485 -17.03006 -16.73044 -16.50153 -16.07056 -15.79096 -15.54965 -15.42665 -15.13438 -14.75817 -14.64958 -14.45789 -14.23870 -13.98044 -13.81046 -13.64287 -13.53978 -13.41156 -13.21605 -13.03068 -12.90816 -12.46308 -12.46185 -12.30594 -12.16786 -11.71043 -11.62664 -11.16316 -10.98580 -10.77339 -10.56357 -10.51797 -10.39582 -10.11637 -9.78518 -9.55678 -8.12820 -6.29182 -0.06238 0.29393 0.32251 1.35788 1.41864 1.42382 1.54082 2.12615 2.40434 2.49797 2.85376 3.11954 3.15628 3.30448 3.65739 3.90996 3.99570 4.04033 4.15899 4.19791 4.28883 4.34928 4.45400 4.57855 4.61881 4.69907 4.71652 4.78032 4.82040 4.83237 4.88218 5.06181 5.11152 5.14604 5.19483 5.24449 5.26886 5.33033 5.38183 5.50779 5.56881 5.72597 5.83381 5.91624 5.94635 6.28728 6.42367 6.68741 6.82524 6.94609 6.96087 7.40684 8.91454 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.002469 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.527656 B =11337.915507 C =12472.954791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.127 4.127 3 C -0.083 4.083 4 C -0.147 4.147 5 C 0.078 3.922 6 C 0.174 3.826 7 N -0.682 5.682 8 C 0.525 3.475 9 O -0.515 6.515 10 C 0.486 3.514 11 O -0.560 6.560 12 N -0.573 5.573 13 C 0.048 3.952 14 C -0.120 4.120 15 C -0.107 4.107 16 C 0.039 3.961 17 H -0.010 1.010 18 C -0.534 4.534 19 H 0.063 0.937 20 C 0.010 3.990 21 N -0.915 5.915 22 Si 0.960 3.040 23 H -0.262 1.262 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.121 3.879 27 N -0.494 5.494 28 C 0.082 3.918 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.413 0.587 37 H 0.070 0.930 38 H 0.156 0.844 39 H 0.099 0.901 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.261 0.739 44 H 0.043 0.957 45 H 0.084 0.916 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.388 -0.888 -18.723 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.129 4.129 3 C -0.109 4.109 4 C -0.168 4.168 5 C -0.059 4.059 6 C 0.051 3.949 7 N -0.334 5.334 8 C 0.307 3.693 9 O -0.393 6.393 10 C 0.269 3.731 11 O -0.440 6.440 12 N -0.304 5.304 13 C -0.072 4.072 14 C -0.158 4.158 15 C -0.144 4.144 16 C 0.019 3.981 17 H 0.008 0.992 18 C -0.572 4.572 19 H 0.081 0.919 20 C -0.190 4.190 21 N -0.554 5.554 22 Si 0.785 3.215 23 H -0.186 1.186 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.001 4.001 27 N -0.203 5.203 28 C -0.076 4.076 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.181 0.819 33 H 0.172 0.828 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.250 0.750 37 H 0.089 0.911 38 H 0.173 0.827 39 H 0.117 0.883 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.103 0.897 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -15.913 -1.579 -18.813 24.691 hybrid contribution -0.323 0.763 1.802 1.984 sum -16.237 -0.816 -17.010 23.530 Atomic orbital electron populations 1.20821 0.87827 1.04503 1.03558 1.21375 0.99364 0.93745 0.98431 1.21913 0.93573 0.99646 0.95721 1.22276 0.96202 0.98887 0.99391 1.21020 0.95261 0.89616 1.00047 1.20324 0.88053 1.04629 0.81862 1.45745 1.05811 1.71053 1.10744 1.19896 0.83577 0.77427 0.88442 1.90281 1.52924 1.50373 1.45761 1.20428 0.83635 0.79282 0.89764 1.90732 1.55359 1.51628 1.46272 1.48460 1.06598 1.65358 1.10034 1.23336 0.91933 0.99228 0.92669 1.21820 0.97566 0.98831 0.97550 1.21561 0.97901 1.00771 0.94205 1.18918 0.91999 0.92900 0.94241 0.99213 1.21520 0.97071 1.47008 0.91609 0.91871 1.25897 0.95292 0.94470 1.03293 1.70056 1.08099 1.46980 1.30289 0.85471 0.78974 0.77577 0.79442 1.18576 1.20745 1.20763 1.21961 0.99278 0.98657 0.80202 1.67412 1.09693 1.31670 1.11544 1.23085 0.89008 0.99216 0.96243 0.90037 0.89859 0.89930 0.81881 0.82777 0.87615 0.89387 0.75041 0.91132 0.82747 0.88291 0.93394 0.92706 0.92480 0.92966 0.93837 0.89747 0.80927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.04 71.24 0.72 0.02 16 2 C -0.13 -1.60 5.90 -19.78 -0.12 -1.72 16 3 C -0.08 -1.03 9.86 22.47 0.22 -0.81 16 4 C -0.15 -2.29 9.72 22.36 0.22 -2.07 16 5 C 0.08 1.55 6.15 42.55 0.26 1.82 16 6 C 0.17 3.69 5.98 85.63 0.51 4.20 16 7 N -0.68 -18.60 5.54 -468.12 -2.59 -21.19 16 8 C 0.53 17.59 7.78 87.27 0.68 18.27 16 9 O -0.51 -17.04 13.10 -3.25 -0.04 -17.08 16 10 C 0.49 20.64 7.74 87.27 0.68 21.32 16 11 O -0.56 -27.36 15.95 -3.27 -0.05 -27.41 16 12 N -0.57 -24.85 2.97 -820.48 -2.44 -27.29 16 13 C 0.05 1.70 6.27 86.36 0.54 2.24 16 14 C -0.12 -4.11 6.08 30.67 0.19 -3.93 16 15 C -0.11 -4.38 5.11 30.62 0.16 -4.22 16 16 C 0.04 2.00 2.25 -11.46 -0.03 1.97 16 17 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 18 C -0.53 -29.67 8.57 25.60 0.22 -29.45 16 19 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 20 C 0.01 0.55 5.30 84.65 0.45 1.00 16 21 N -0.92 -55.19 11.38 21.45 0.24 -54.94 16 22 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 26 C 0.12 6.18 5.38 86.36 0.46 6.65 16 27 N -0.49 -10.80 10.27 -183.89 -1.89 -12.69 16 28 C 0.08 1.36 10.86 84.67 0.92 2.27 16 29 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.08 0.33 8.10 -2.39 -0.02 0.31 16 31 H 0.08 0.36 8.09 -2.38 -0.02 0.34 16 32 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.11 1.91 8.04 -2.38 -0.02 1.89 16 35 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.41 11.62 7.95 -92.71 -0.74 10.89 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.16 5.15 3.78 -78.73 -0.30 4.85 16 39 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.08 5.03 5.17 -2.39 -0.01 5.02 16 46 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -72.27 377.70 1.31 -70.96 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.02 Total: 25.75 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 6.08 Total: 17.57 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -6.68 Total: -116.12 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -0.09 Total: -44.49 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -72.27 1.31 -70.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350874176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.887 kcal (2) G-P(sol) polarization free energy of solvation -72.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds