Wall clock time and date at job start Tue Mar 31 2020 16:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38679 * 120.41873 * 2 1 4 4 C 1.38622 * 118.42073 * 180.02562 * 3 2 1 5 5 C 1.38225 * 119.16364 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.62267 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.47155 * 95.00218 * 6 5 4 8 8 C 1.34778 * 120.00141 * 180.02562 * 7 6 5 9 9 O 1.21347 * 120.00143 * 359.97438 * 8 7 6 10 10 C 1.49452 * 119.99873 * 179.97438 * 8 7 6 11 11 O 1.21352 * 120.00368 * 353.61235 * 10 8 7 12 12 N 1.34782 * 119.99853 * 173.61290 * 10 8 7 13 13 C 1.46928 * 120.62748 * 351.27341 * 12 10 8 14 14 C 1.53194 * 108.88949 * 233.55808 * 13 12 10 15 15 C 1.53076 * 109.29729 * 305.57898 * 14 13 12 16 16 C 1.53040 * 109.65532 * 61.15721 * 15 14 13 17 17 H 1.08991 * 109.50418 * 58.64985 * 16 15 14 18 18 C 1.50700 * 109.49510 * 178.75142 * 16 15 14 19 19 H 1.07995 * 120.00544 * 34.99849 * 18 16 15 20 20 C 1.37883 * 119.99712 * 215.00205 * 18 16 15 21 21 N 1.31515 * 119.99984 * 174.90469 * 20 18 16 22 22 Si 1.86803 * 120.00037 * 354.90530 * 20 18 16 23 23 H 1.48497 * 109.46798 * 94.66334 * 22 20 18 24 24 H 1.48500 * 109.46944 * 214.66632 * 22 20 18 25 25 H 1.48499 * 109.47042 * 334.66587 * 22 20 18 26 26 C 1.46926 * 120.63165 * 171.29622 * 12 10 8 27 27 N 1.31854 * 120.76502 * 0.25600 * 5 4 3 28 28 C 1.31893 * 121.72372 * 359.47587 * 27 5 4 29 29 H 1.09007 * 109.47226 * 89.99391 * 1 2 3 30 30 H 1.08999 * 109.47569 * 209.99642 * 1 2 3 31 31 H 1.09004 * 109.47597 * 329.99668 * 1 2 3 32 32 H 1.08005 * 120.78717 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.42174 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.47206 * 335.00293 * 6 5 4 35 35 H 1.09001 * 109.47780 * 215.00492 * 6 5 4 36 36 H 0.96998 * 120.00301 * 359.97438 * 7 6 5 37 37 H 1.08999 * 109.58763 * 353.41653 * 13 12 10 38 38 H 1.09002 * 109.58608 * 113.70289 * 13 12 10 39 39 H 1.08998 * 109.50040 * 65.39283 * 14 13 12 40 40 H 1.09001 * 109.49449 * 185.48666 * 14 13 12 41 41 H 1.08994 * 109.34804 * 301.13289 * 15 14 13 42 42 H 1.09004 * 109.44061 * 181.23460 * 15 14 13 43 43 H 0.97003 * 120.00101 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.58859 * 246.15909 * 26 12 10 45 45 H 1.09003 * 109.58551 * 6.44068 * 26 12 10 46 46 H 1.07997 * 119.62259 * 180.27353 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 -0.0005 5 6 4.2255 -0.0822 -0.0016 6 6 5.7311 -0.1468 -0.0028 7 7 6.2149 -0.2887 1.3727 8 6 7.5380 -0.3666 1.6170 9 8 8.3287 -0.3196 0.6977 10 6 8.0315 -0.5108 3.0203 11 8 7.2521 -0.4414 3.9478 12 7 9.3424 -0.7178 3.2558 13 6 10.2674 -0.9938 2.1481 14 6 11.0304 -2.2875 2.4498 15 6 11.7030 -2.1703 3.8199 16 6 10.6380 -1.9707 4.9007 17 1 9.9442 -2.8112 4.8876 18 6 11.3016 -1.8864 6.2512 19 1 12.2684 -1.4153 6.3494 20 6 10.6744 -2.4110 7.3614 21 7 11.2950 -2.4278 8.5208 22 14 8.9430 -3.0979 7.2188 23 1 9.0093 -4.5641 6.9932 24 1 8.1967 -2.8231 8.4728 25 1 8.2469 -2.4523 6.0769 26 6 9.8734 -0.6722 4.6250 27 7 3.5255 -1.1995 -0.0072 28 6 2.2066 -1.1916 -0.0016 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6889 2.1424 0.0004 33 1 4.1735 2.0592 -0.0001 34 1 6.1337 0.7684 -0.4369 35 1 6.0577 -1.0031 -0.5929 36 1 5.5830 -0.3259 2.1077 37 1 9.7043 -1.1093 1.2220 38 1 10.9725 -0.1689 2.0466 39 1 10.3348 -3.1266 2.4588 40 1 11.7878 -2.4504 1.6830 41 1 12.3818 -1.3175 3.8172 42 1 12.2647 -3.0811 4.0275 43 1 10.8536 -2.7965 9.3019 44 1 10.5480 0.1779 4.7272 45 1 9.0505 -0.5728 5.3329 46 1 1.6671 -2.1272 -0.0020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350874178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:30 Heat of formation + Delta-G solvation = -28.512590 kcal Electronic energy + Delta-G solvation = -27877.135358 eV Core-core repulsion = 23959.901277 eV Total energy + Delta-G solvation = -3917.234081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.96776 -40.47853 -38.52714 -37.07959 -35.65366 -33.81336 -33.19905 -32.39685 -31.83800 -30.47718 -29.25283 -26.51743 -25.30082 -25.08993 -23.96769 -22.65139 -21.84873 -21.72585 -20.28870 -19.03979 -17.70564 -17.16402 -16.92516 -16.77177 -16.31603 -15.90320 -15.59552 -15.55240 -14.83357 -14.52783 -14.37340 -14.15009 -13.88327 -13.62192 -13.53048 -13.34188 -13.17327 -13.10729 -12.91231 -12.79674 -12.50025 -12.44709 -12.18187 -11.99339 -11.67864 -11.12019 -10.71389 -10.61986 -10.45023 -10.23727 -10.06353 -9.88894 -9.69322 -9.54619 -9.42067 -9.34929 -9.18805 -8.74767 -8.62781 -8.10161 -6.11421 -4.12265 0.51759 0.82696 1.59651 2.50396 3.30744 3.33174 3.41100 3.42495 3.54120 3.73888 3.83295 4.19906 4.32662 4.43704 4.45418 4.49925 4.51685 4.84044 5.04584 5.06980 5.13377 5.19807 5.31625 5.34165 5.46162 5.49688 5.53718 5.64429 5.72418 5.78601 5.91779 6.04467 6.21420 6.21685 6.25266 6.38970 6.50338 6.57801 6.67002 6.80056 6.86008 7.05147 7.27723 7.35928 7.53425 7.65480 7.74244 7.86144 8.27377 8.48701 8.93953 9.51986 11.00801 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.002673 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.978744 B =10470.907569 C =11585.718278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.131 4.131 3 C -0.078 4.078 4 C -0.146 4.146 5 C 0.098 3.902 6 C 0.172 3.828 7 N -0.698 5.698 8 C 0.513 3.487 9 O -0.513 6.513 10 C 0.496 3.504 11 O -0.530 6.530 12 N -0.571 5.571 13 C 0.072 3.928 14 C -0.137 4.137 15 C -0.105 4.105 16 C 0.008 3.992 17 H 0.035 0.965 18 C -0.513 4.513 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.895 5.895 22 Si 0.867 3.133 23 H -0.279 1.279 24 H -0.287 1.287 25 H -0.252 1.252 26 C 0.107 3.893 27 N -0.463 5.463 28 C 0.100 3.900 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.414 0.586 37 H 0.129 0.871 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.265 0.735 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.907 6.733 -21.004 29.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.133 4.133 3 C -0.104 4.104 4 C -0.166 4.166 5 C -0.039 4.039 6 C 0.048 3.952 7 N -0.351 5.351 8 C 0.295 3.705 9 O -0.390 6.390 10 C 0.278 3.722 11 O -0.408 6.408 12 N -0.303 5.303 13 C -0.050 4.050 14 C -0.176 4.176 15 C -0.143 4.143 16 C -0.012 4.012 17 H 0.053 0.947 18 C -0.551 4.551 19 H 0.094 0.906 20 C -0.127 4.127 21 N -0.532 5.532 22 Si 0.693 3.307 23 H -0.205 1.205 24 H -0.213 1.213 25 H -0.175 1.175 26 C -0.013 4.013 27 N -0.172 5.172 28 C -0.058 4.058 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.250 0.750 37 H 0.146 0.854 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -18.281 5.960 -20.972 28.453 hybrid contribution -1.630 0.415 0.508 1.757 sum -19.911 6.375 -20.464 29.255 Atomic orbital electron populations 1.20756 0.89945 1.03461 1.02769 1.21043 0.97853 0.94273 1.00176 1.21533 0.93893 0.98415 0.96585 1.22042 0.95315 0.99001 1.00240 1.21103 0.95805 0.88902 0.98138 1.20168 0.87110 1.04044 0.83828 1.45740 1.07094 1.72899 1.09405 1.20560 0.82614 0.76980 0.90298 1.90490 1.53467 1.48680 1.46370 1.19866 0.83866 0.80019 0.88475 1.90750 1.54528 1.50681 1.44811 1.48441 1.06086 1.65117 1.10613 1.22749 0.93517 0.97444 0.91271 1.22028 0.99387 0.97154 0.98991 1.21592 0.98531 1.01447 0.92758 1.19461 0.93801 0.92561 0.95387 0.94666 1.20890 1.05773 1.38909 0.89556 0.90619 1.25079 0.97505 0.94884 0.95278 1.69906 1.37542 1.45508 1.00242 0.86992 0.85478 0.79694 0.78507 1.20492 1.21342 1.17549 1.22711 0.98407 1.01379 0.78849 1.67498 1.08395 1.30849 1.10433 1.22720 0.89473 0.97747 0.95851 0.90675 0.90898 0.91128 0.84493 0.84283 0.89217 0.89055 0.75003 0.85424 0.91695 0.92404 0.91551 0.92754 0.92186 0.92551 0.91425 0.89736 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.45 10.04 36.00 0.36 -0.08 16 2 C -0.13 -0.88 5.90 -104.48 -0.62 -1.50 16 3 C -0.08 -0.51 9.86 -39.28 -0.39 -0.90 16 4 C -0.15 -1.10 9.72 -39.44 -0.38 -1.49 16 5 C 0.10 0.94 6.15 -82.59 -0.51 0.44 16 6 C 0.17 1.73 5.98 -5.20 -0.03 1.70 16 7 N -0.70 -8.77 5.54 -61.91 -0.34 -9.12 16 8 C 0.51 7.88 7.74 -11.58 -0.09 7.80 16 9 O -0.51 -8.08 13.18 5.50 0.07 -8.01 16 10 C 0.50 9.29 7.73 -11.58 -0.09 9.20 16 11 O -0.53 -11.24 15.93 5.50 0.09 -11.16 16 12 N -0.57 -10.93 2.97 -173.27 -0.52 -11.45 16 13 C 0.07 1.18 5.98 -3.71 -0.02 1.16 16 14 C -0.14 -2.26 6.09 -26.59 -0.16 -2.42 16 15 C -0.11 -2.07 5.14 -26.67 -0.14 -2.21 16 16 C 0.01 0.18 1.79 -91.65 -0.16 0.01 16 17 H 0.04 0.87 5.60 -51.93 -0.29 0.58 16 18 C -0.51 -14.12 8.86 -34.44 -0.31 -14.43 16 19 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 20 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 21 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 22 Si 0.87 22.13 26.62 -169.99 -4.53 17.60 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.25 -6.44 5.99 56.52 0.34 -6.11 16 26 C 0.11 2.34 5.53 -3.71 -0.02 2.32 16 27 N -0.46 -4.93 10.27 -9.47 -0.10 -5.03 16 28 C 0.10 0.83 10.86 -17.54 -0.19 0.64 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 31 H 0.07 0.23 8.10 -51.93 -0.42 -0.19 16 32 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.09 0.77 8.04 -51.93 -0.42 0.35 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.41 5.25 7.95 -40.82 -0.32 4.93 16 37 H 0.13 2.03 4.31 -54.82 -0.24 1.80 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.08 2.03 5.89 -51.93 -0.31 1.73 16 46 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -33.40 375.19 -8.42 -41.83 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.69 Total: 3.84 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.84 Total: 2.30 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.18 Total: -52.05 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.16 Total: -19.17 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.53 Total: 17.60 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.40 -8.42 -41.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350874178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.315 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds