Wall clock time and date at job start Tue Mar 31 2020 16:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38679 * 120.41873 * 2 1 4 4 C 1.38622 * 118.42073 * 180.02562 * 3 2 1 5 5 C 1.38225 * 119.16364 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.62267 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.47155 * 95.00218 * 6 5 4 8 8 C 1.34778 * 120.00141 * 180.02562 * 7 6 5 9 9 O 1.21347 * 120.00143 * 359.97438 * 8 7 6 10 10 C 1.49452 * 119.99873 * 179.97438 * 8 7 6 11 11 O 1.21352 * 120.00368 * 353.61235 * 10 8 7 12 12 N 1.34782 * 119.99853 * 173.61290 * 10 8 7 13 13 C 1.46928 * 120.62748 * 351.27341 * 12 10 8 14 14 C 1.53194 * 108.88949 * 233.55808 * 13 12 10 15 15 C 1.53076 * 109.29729 * 305.57898 * 14 13 12 16 16 C 1.53040 * 109.65532 * 61.15721 * 15 14 13 17 17 H 1.08991 * 109.50418 * 58.64985 * 16 15 14 18 18 C 1.50700 * 109.49510 * 178.75142 * 16 15 14 19 19 H 1.07995 * 120.00544 * 34.99849 * 18 16 15 20 20 C 1.37883 * 119.99712 * 215.00205 * 18 16 15 21 21 N 1.31515 * 119.99984 * 174.90469 * 20 18 16 22 22 Si 1.86803 * 120.00037 * 354.90530 * 20 18 16 23 23 H 1.48497 * 109.46798 * 94.66334 * 22 20 18 24 24 H 1.48500 * 109.46944 * 214.66632 * 22 20 18 25 25 H 1.48499 * 109.47042 * 334.66587 * 22 20 18 26 26 C 1.46926 * 120.63165 * 171.29622 * 12 10 8 27 27 N 1.31854 * 120.76502 * 0.25600 * 5 4 3 28 28 C 1.31893 * 121.72372 * 359.47587 * 27 5 4 29 29 H 1.09007 * 109.47226 * 89.99391 * 1 2 3 30 30 H 1.08999 * 109.47569 * 209.99642 * 1 2 3 31 31 H 1.09004 * 109.47597 * 329.99668 * 1 2 3 32 32 H 1.08005 * 120.78717 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.42174 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.47206 * 335.00293 * 6 5 4 35 35 H 1.09001 * 109.47780 * 215.00492 * 6 5 4 36 36 H 0.96998 * 120.00301 * 359.97438 * 7 6 5 37 37 H 1.08999 * 109.58763 * 353.41653 * 13 12 10 38 38 H 1.09002 * 109.58608 * 113.70289 * 13 12 10 39 39 H 1.08998 * 109.50040 * 65.39283 * 14 13 12 40 40 H 1.09001 * 109.49449 * 185.48666 * 14 13 12 41 41 H 1.08994 * 109.34804 * 301.13289 * 15 14 13 42 42 H 1.09004 * 109.44061 * 181.23460 * 15 14 13 43 43 H 0.97003 * 120.00101 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.58859 * 246.15909 * 26 12 10 45 45 H 1.09003 * 109.58551 * 6.44068 * 26 12 10 46 46 H 1.07997 * 119.62259 * 180.27353 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 -0.0005 5 6 4.2255 -0.0822 -0.0016 6 6 5.7311 -0.1468 -0.0028 7 7 6.2149 -0.2887 1.3727 8 6 7.5380 -0.3666 1.6170 9 8 8.3287 -0.3196 0.6977 10 6 8.0315 -0.5108 3.0203 11 8 7.2521 -0.4414 3.9478 12 7 9.3424 -0.7178 3.2558 13 6 10.2674 -0.9938 2.1481 14 6 11.0304 -2.2875 2.4498 15 6 11.7030 -2.1703 3.8199 16 6 10.6380 -1.9707 4.9007 17 1 9.9442 -2.8112 4.8876 18 6 11.3016 -1.8864 6.2512 19 1 12.2684 -1.4153 6.3494 20 6 10.6744 -2.4110 7.3614 21 7 11.2950 -2.4278 8.5208 22 14 8.9430 -3.0979 7.2188 23 1 9.0093 -4.5641 6.9932 24 1 8.1967 -2.8231 8.4728 25 1 8.2469 -2.4523 6.0769 26 6 9.8734 -0.6722 4.6250 27 7 3.5255 -1.1995 -0.0072 28 6 2.2066 -1.1916 -0.0016 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6889 2.1424 0.0004 33 1 4.1735 2.0592 -0.0001 34 1 6.1337 0.7684 -0.4369 35 1 6.0577 -1.0031 -0.5929 36 1 5.5830 -0.3259 2.1077 37 1 9.7043 -1.1093 1.2220 38 1 10.9725 -0.1689 2.0466 39 1 10.3348 -3.1266 2.4588 40 1 11.7878 -2.4504 1.6830 41 1 12.3818 -1.3175 3.8172 42 1 12.2647 -3.0811 4.0275 43 1 10.8536 -2.7965 9.3019 44 1 10.5480 0.1779 4.7272 45 1 9.0505 -0.5728 5.3329 46 1 1.6671 -2.1272 -0.0020 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350874178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:29 Heat of formation + Delta-G solvation = -51.706192 kcal Electronic energy + Delta-G solvation = -27878.141108 eV Core-core repulsion = 23959.901277 eV Total energy + Delta-G solvation = -3918.239831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.07993 -41.31218 -39.87228 -38.63463 -36.61134 -35.19880 -34.37757 -33.57424 -33.00076 -32.20698 -29.95628 -27.77330 -26.96126 -26.19344 -24.59357 -23.83972 -23.44249 -22.42959 -21.64034 -20.62301 -19.26082 -18.64508 -18.13977 -17.79399 -17.27363 -17.15530 -16.83346 -16.29887 -16.07915 -15.85512 -15.65036 -15.32018 -15.14503 -14.99466 -14.83034 -14.48044 -14.24473 -14.12726 -13.91599 -13.76762 -13.68739 -13.48629 -13.24091 -13.18740 -13.02745 -12.59649 -12.47402 -12.35777 -12.04150 -11.71065 -11.65994 -11.27176 -11.14996 -10.79903 -10.78325 -10.55457 -10.41490 -10.22608 -9.83004 -9.69407 -8.35676 -6.38102 -0.07257 0.26553 0.28528 1.24522 1.29606 1.33302 1.46870 2.04766 2.28684 2.40514 2.82168 3.01944 3.11164 3.25488 3.64625 3.89850 3.98517 4.02756 4.03101 4.14747 4.21494 4.28235 4.44313 4.45101 4.53242 4.61053 4.68062 4.69894 4.76001 4.81694 4.86453 4.86888 4.96680 5.06154 5.09865 5.17224 5.18932 5.24407 5.31817 5.35322 5.55459 5.60500 5.65290 5.71559 5.89963 6.24026 6.29487 6.60044 6.71023 6.85640 6.93825 7.28435 8.80490 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.002673 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.978744 B =10470.907569 C =11585.718278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.127 4.127 3 C -0.083 4.083 4 C -0.145 4.145 5 C 0.077 3.923 6 C 0.175 3.825 7 N -0.684 5.684 8 C 0.523 3.477 9 O -0.516 6.516 10 C 0.490 3.510 11 O -0.561 6.561 12 N -0.576 5.576 13 C 0.072 3.928 14 C -0.129 4.129 15 C -0.102 4.102 16 C 0.006 3.994 17 H 0.023 0.977 18 C -0.509 4.509 19 H 0.045 0.955 20 C 0.024 3.976 21 N -0.940 5.940 22 Si 0.927 3.073 23 H -0.270 1.270 24 H -0.286 1.286 25 H -0.256 1.256 26 C 0.117 3.883 27 N -0.496 5.496 28 C 0.081 3.919 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.413 0.587 37 H 0.141 0.859 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.103 0.897 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.267 0.733 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.822 7.441 -23.756 32.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.129 4.129 3 C -0.108 4.108 4 C -0.165 4.165 5 C -0.060 4.060 6 C 0.052 3.948 7 N -0.336 5.336 8 C 0.304 3.696 9 O -0.394 6.394 10 C 0.273 3.727 11 O -0.441 6.441 12 N -0.308 5.308 13 C -0.048 4.048 14 C -0.167 4.167 15 C -0.140 4.140 16 C -0.014 4.014 17 H 0.041 0.959 18 C -0.547 4.547 19 H 0.064 0.936 20 C -0.175 4.175 21 N -0.579 5.579 22 Si 0.752 3.248 23 H -0.196 1.196 24 H -0.212 1.212 25 H -0.180 1.180 26 C -0.005 4.005 27 N -0.205 5.205 28 C -0.077 4.077 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.182 0.818 33 H 0.175 0.825 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.250 0.750 37 H 0.158 0.842 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -20.211 6.666 -23.773 31.907 hybrid contribution -1.076 0.248 1.314 1.716 sum -21.287 6.914 -22.459 31.707 Atomic orbital electron populations 1.20821 0.87928 1.04295 1.03716 1.21370 0.99314 0.93795 0.98456 1.21922 0.93667 0.99557 0.95683 1.22275 0.96101 0.98879 0.99286 1.21056 0.95337 0.89604 1.00033 1.20311 0.87939 1.04630 0.81899 1.45745 1.05919 1.71201 1.10724 1.19792 0.83564 0.77839 0.88416 1.90477 1.53712 1.49527 1.45648 1.20484 0.83349 0.78942 0.89898 1.90728 1.55264 1.51819 1.46264 1.48433 1.06953 1.65348 1.10019 1.22966 0.93435 0.97915 0.90504 1.21989 0.99950 0.97046 0.97671 1.21498 0.97531 1.01410 0.93556 1.19426 0.94554 0.92868 0.94536 0.95909 1.21154 1.04614 1.37294 0.91642 0.93632 1.25770 1.00793 0.95802 0.95105 1.70017 1.39220 1.47598 1.01089 0.86040 0.81373 0.79312 0.78072 1.19554 1.21244 1.17976 1.22206 0.97385 1.00496 0.80395 1.67417 1.09682 1.31850 1.11571 1.23058 0.89050 0.99195 0.96369 0.89524 0.90347 0.90054 0.81798 0.82452 0.87319 0.89699 0.75049 0.84244 0.90172 0.92840 0.87888 0.92271 0.92713 0.92415 0.90980 0.92362 0.81197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.04 71.23 0.71 0.13 16 2 C -0.13 -1.43 5.90 -19.77 -0.12 -1.55 16 3 C -0.08 -0.87 9.86 22.47 0.22 -0.64 16 4 C -0.15 -1.88 9.72 22.36 0.22 -1.67 16 5 C 0.08 1.37 6.15 42.55 0.26 1.63 16 6 C 0.17 3.24 5.98 85.63 0.51 3.75 16 7 N -0.68 -16.26 5.54 -468.15 -2.59 -18.86 16 8 C 0.52 15.22 7.74 87.27 0.68 15.90 16 9 O -0.52 -15.00 13.18 -3.24 -0.04 -15.05 16 10 C 0.49 17.96 7.73 87.27 0.67 18.63 16 11 O -0.56 -23.80 15.93 -3.25 -0.05 -23.85 16 12 N -0.58 -21.44 2.97 -820.46 -2.44 -23.88 16 13 C 0.07 2.18 5.98 86.36 0.52 2.70 16 14 C -0.13 -3.88 6.09 30.68 0.19 -3.69 16 15 C -0.10 -3.90 5.14 30.63 0.16 -3.74 16 16 C 0.01 0.27 1.79 -11.46 -0.02 0.25 16 17 H 0.02 1.12 5.60 -2.39 -0.01 1.10 16 18 C -0.51 -28.68 8.86 25.60 0.23 -28.45 16 19 H 0.05 2.79 8.06 -2.91 -0.02 2.76 16 20 C 0.02 1.40 5.47 84.66 0.46 1.86 16 21 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 22 Si 0.93 46.90 26.62 68.60 1.83 48.72 16 23 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 25 H -0.26 -13.01 5.99 99.48 0.60 -12.41 16 26 C 0.12 5.12 5.53 86.36 0.48 5.60 16 27 N -0.50 -10.17 10.27 -183.89 -1.89 -12.06 16 28 C 0.08 1.25 10.86 84.67 0.92 2.17 16 29 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.08 0.35 8.09 -2.39 -0.02 0.33 16 31 H 0.08 0.28 8.10 -2.39 -0.02 0.26 16 32 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.11 1.60 8.04 -2.39 -0.02 1.59 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.41 10.13 7.95 -92.71 -0.74 9.39 16 37 H 0.14 4.02 4.31 -48.17 -0.21 3.81 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.10 2.42 8.14 -2.39 -0.02 2.41 16 41 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 44 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 45 H 0.06 2.85 5.89 -2.39 -0.01 2.83 16 46 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -73.75 375.19 1.16 -72.60 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -0.04 Total: 17.98 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 6.09 Total: 12.88 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -6.62 Total: -113.28 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.09 Total: -38.90 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.83 Total: 48.72 kcal Total: -73.75 1.16 -72.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350874178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.889 kcal (2) G-P(sol) polarization free energy of solvation -73.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds