Wall clock time and date at job start Tue Mar 31 2020 17:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 120.00006 * 2 1 4 4 O 1.21283 * 119.99627 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00133 * 180.02562 * 3 2 1 6 6 C 1.52991 * 110.78634 * 61.77548 * 5 3 2 7 7 C 1.55160 * 110.71906 * 185.02197 * 5 3 2 8 8 C 1.55131 * 101.48886 * 82.69081 * 7 5 3 9 9 N 1.47425 * 104.72043 * 37.29119 * 8 7 5 10 10 C 1.34780 * 125.64376 * 155.81616 * 9 8 7 11 11 O 1.21586 * 119.99777 * 179.69725 * 10 9 8 12 12 N 1.34773 * 120.00130 * 359.69564 * 10 9 8 13 13 C 1.39956 * 120.00243 * 184.73681 * 12 10 9 14 14 C 1.39285 * 119.94814 * 213.57468 * 13 12 10 15 15 C 1.38493 * 120.42915 * 179.97438 * 14 13 12 16 16 C 1.37684 * 120.32004 * 0.02562 * 15 14 13 17 17 C 1.40741 * 119.88450 * 359.97438 * 16 15 14 18 18 C 1.41405 * 120.21009 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99548 * 153.55599 * 18 17 16 20 20 C 1.39930 * 120.00219 * 333.56541 * 18 17 16 21 21 N 1.30838 * 119.99701 * 329.95888 * 20 18 17 22 22 Si 1.86801 * 120.00303 * 149.96187 * 20 18 17 23 23 H 1.48501 * 109.46865 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.46976 * 299.99466 * 22 20 18 25 25 H 1.48496 * 109.46985 * 59.99964 * 22 20 18 26 26 C 1.38234 * 119.94821 * 33.82775 * 13 12 10 27 27 C 1.47022 * 108.70634 * 335.55806 * 9 8 7 28 28 H 1.08992 * 109.47388 * 300.00923 * 1 2 3 29 29 H 1.09007 * 109.46762 * 60.00746 * 1 2 3 30 30 H 1.09000 * 109.46586 * 180.02562 * 1 2 3 31 31 H 0.96995 * 120.00249 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47417 * 298.22097 * 6 5 3 33 33 H 1.09007 * 109.46874 * 58.21747 * 6 5 3 34 34 H 1.08995 * 109.47432 * 178.21694 * 6 5 3 35 35 H 1.08997 * 111.00127 * 200.92973 * 7 5 3 36 36 H 1.08995 * 110.99910 * 324.74201 * 7 5 3 37 37 H 1.08999 * 110.49410 * 278.45234 * 8 7 5 38 38 H 1.08995 * 110.34097 * 156.05677 * 8 7 5 39 39 H 0.97003 * 120.00225 * 4.73623 * 12 10 9 40 40 H 1.08001 * 119.78612 * 0.02562 * 14 13 12 41 41 H 1.08003 * 119.83453 * 179.97438 * 15 14 13 42 42 H 1.08006 * 120.05329 * 179.97438 * 16 15 14 43 43 H 0.97000 * 119.99515 * 353.43272 * 21 20 18 44 44 H 1.08007 * 120.15512 * 0.02752 * 26 13 12 45 45 H 1.08997 * 109.88126 * 120.70506 * 27 9 8 46 46 H 1.09007 * 109.87872 * 241.71323 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1884 0.4911 -1.2612 7 6 4.1949 2.6129 0.1266 8 6 4.1239 2.8366 1.6600 9 7 4.4881 1.5338 2.2459 10 6 5.0019 1.3424 3.4772 11 8 5.2608 0.2177 3.8597 12 7 5.2287 2.3976 4.2842 13 6 5.8533 2.2101 5.5226 14 6 5.5041 3.0126 6.6061 15 6 6.1154 2.8353 7.8361 16 6 7.0763 1.8631 8.0010 17 6 7.4394 1.0446 6.9152 18 6 8.4257 0.0444 7.0767 19 1 8.4171 -0.8298 6.4425 20 6 9.4128 0.1871 8.0582 21 7 9.8163 1.3805 8.4115 22 14 10.1545 -1.3262 8.8641 23 1 11.1709 -0.9074 9.8625 24 1 9.0841 -2.1009 9.5418 25 1 10.7984 -2.1732 7.8282 26 6 6.8195 1.2321 5.6671 27 6 4.1923 0.4774 1.2671 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 3.8630 -0.5490 -1.2844 33 1 3.8109 1.0096 -2.1427 34 1 5.2776 0.5310 -1.2549 35 1 5.2219 2.6739 -0.2334 36 1 3.5557 3.3212 -0.4005 37 1 3.1139 3.1177 1.9583 38 1 4.8372 3.6024 1.9646 39 1 4.9591 3.2872 4.0069 40 1 4.7512 3.7776 6.4865 41 1 5.8376 3.4633 8.6697 42 1 7.5506 1.7288 8.9621 43 1 9.5026 2.1611 7.9287 44 1 7.0942 0.6123 4.8262 45 1 5.1031 -0.0713 1.0273 46 1 3.4447 -0.2046 1.6724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364137048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:49 Heat of formation + Delta-G solvation = -44.012286 kcal Electronic energy + Delta-G solvation = -28253.312499 eV Core-core repulsion = 24335.406301 eV Total energy + Delta-G solvation = -3917.906198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.08380 -39.73958 -37.91878 -36.89400 -35.03227 -34.58832 -33.48330 -32.75758 -29.92807 -29.64207 -28.35349 -27.35432 -26.37367 -25.02003 -23.62786 -22.58990 -21.45285 -20.91539 -19.96304 -19.43204 -18.36731 -17.96506 -17.20785 -16.25971 -15.94160 -15.81672 -15.48111 -14.99581 -14.74476 -14.49946 -14.07692 -13.92649 -13.84316 -13.62060 -13.34248 -13.10331 -12.87375 -12.80565 -12.67052 -12.63996 -12.59228 -12.07515 -11.78981 -11.63962 -11.46708 -11.44290 -11.18696 -11.02338 -10.50218 -10.37600 -10.29970 -10.08930 -9.68308 -9.50848 -9.50283 -9.10076 -8.85347 -8.61663 -7.59289 -7.18844 -6.93976 -4.35147 2.26979 2.60286 2.79839 2.81053 2.90188 3.21246 3.30728 3.42666 3.63785 3.90257 4.08192 4.13749 4.30719 4.33102 4.57106 4.60955 4.86252 4.92810 5.01874 5.13993 5.16858 5.27808 5.37117 5.42765 5.51174 5.54202 5.57264 5.64170 5.67613 5.81253 6.00085 6.11298 6.17455 6.37027 6.69415 6.80153 6.94159 7.01288 7.06516 7.25670 7.54276 7.74012 7.78163 7.84146 7.87597 7.95411 8.26264 8.30292 8.40477 8.86434 8.91506 9.00316 10.09661 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019738 B = 0.002560 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.276223 B =10933.748819 C =11440.804389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.531 3.469 4 O -0.533 6.533 5 C -0.099 4.099 6 C -0.133 4.133 7 C -0.108 4.108 8 C 0.097 3.903 9 N -0.641 5.641 10 C 0.718 3.282 11 O -0.562 6.562 12 N -0.678 5.678 13 C 0.181 3.819 14 C -0.278 4.278 15 C -0.070 4.070 16 C -0.230 4.230 17 C 0.110 3.890 18 C -0.525 4.525 19 H 0.076 0.924 20 C 0.044 3.956 21 N -0.792 5.792 22 Si 1.062 2.938 23 H -0.275 1.275 24 H -0.274 1.274 25 H -0.276 1.276 26 C -0.214 4.214 27 C 0.142 3.858 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.403 0.597 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.395 0.605 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.298 0.702 44 H 0.108 0.892 45 H 0.080 0.920 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.246 -0.490 -18.826 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.385 5.385 3 C 0.316 3.684 4 O -0.409 6.409 5 C -0.103 4.103 6 C -0.190 4.190 7 C -0.146 4.146 8 C -0.027 4.027 9 N -0.381 5.381 10 C 0.421 3.579 11 O -0.438 6.438 12 N -0.324 5.324 13 C 0.089 3.911 14 C -0.299 4.299 15 C -0.089 4.089 16 C -0.249 4.249 17 C 0.107 3.893 18 C -0.553 4.553 19 H 0.094 0.906 20 C -0.179 4.179 21 N -0.414 5.414 22 Si 0.885 3.115 23 H -0.200 1.200 24 H -0.200 1.200 25 H -0.202 1.202 26 C -0.236 4.236 27 C 0.018 3.982 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.237 0.763 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.229 0.771 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.126 0.874 45 H 0.099 0.901 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.399 -1.022 -17.292 20.736 hybrid contribution -1.245 0.628 -1.361 1.949 sum -12.644 -0.394 -18.653 22.538 Atomic orbital electron populations 1.21556 0.79333 1.02392 1.02390 1.45778 1.07918 1.08810 1.76001 1.20245 0.89264 0.83673 0.75169 1.90694 1.70033 1.31233 1.48910 1.21870 0.91921 0.99221 0.97251 1.21752 1.02243 1.00257 0.94794 1.22789 1.02073 0.94076 0.95653 1.22371 1.00873 0.86230 0.93187 1.47552 1.68560 1.07925 1.14068 1.15418 0.78377 0.85071 0.79044 1.90985 1.57221 1.22060 1.73494 1.42602 1.62785 1.08742 1.18319 1.17285 0.93032 0.98525 0.82275 1.19942 1.08922 1.07736 0.93308 1.20357 0.96246 0.97201 0.95078 1.21098 1.03280 1.02018 0.98532 1.17511 0.91333 0.90646 0.89840 1.20502 1.11006 1.06008 1.17750 0.90588 1.26982 0.94467 1.02392 0.94029 1.70453 1.33868 1.00697 1.36404 0.83701 0.76817 0.74005 0.76946 1.19958 1.19952 1.20160 1.20975 1.01693 1.03046 0.97869 1.21713 1.00795 0.89840 0.85823 0.92123 0.92151 0.90520 0.76284 0.91682 0.91385 0.90548 0.89440 0.88396 0.91027 0.90511 0.77123 0.89197 0.88889 0.87944 0.88960 0.87395 0.90133 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.70 59.85 0.64 1.22 16 2 N -0.73 -5.58 5.36 -67.08 -0.36 -5.94 16 3 C 0.53 5.40 6.30 -10.98 -0.07 5.33 16 4 O -0.53 -7.18 15.41 5.55 0.09 -7.10 16 5 C -0.10 -0.86 0.76 -153.83 -0.12 -0.98 16 6 C -0.13 -0.77 8.42 37.15 0.31 -0.46 16 7 C -0.11 -0.96 5.76 -24.46 -0.14 -1.10 16 8 C 0.10 1.09 6.29 -2.41 -0.02 1.07 16 9 N -0.64 -9.26 3.32 -176.10 -0.59 -9.84 16 10 C 0.72 14.01 8.23 -86.92 -0.72 13.30 16 11 O -0.56 -13.44 14.36 5.29 0.08 -13.36 16 12 N -0.68 -13.05 5.29 -14.27 -0.08 -13.13 16 13 C 0.18 4.27 6.27 -83.76 -0.52 3.74 16 14 C -0.28 -6.29 9.97 -39.10 -0.39 -6.68 16 15 C -0.07 -1.65 10.02 -39.69 -0.40 -2.05 16 16 C -0.23 -6.07 8.16 -38.84 -0.32 -6.39 16 17 C 0.11 3.08 5.24 -106.85 -0.56 2.52 16 18 C -0.52 -14.72 8.93 -37.74 -0.34 -15.06 16 19 H 0.08 2.14 8.00 -52.48 -0.42 1.72 16 20 C 0.04 1.15 4.80 -17.34 -0.08 1.07 16 21 N -0.79 -21.44 12.41 55.55 0.69 -20.75 16 22 Si 1.06 22.36 30.02 -169.99 -5.10 17.25 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 26 C -0.21 -5.73 8.39 -38.69 -0.32 -6.06 16 27 C 0.14 1.64 6.00 -3.06 -0.02 1.62 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.40 2.12 8.34 -40.82 -0.34 1.78 16 32 H 0.06 0.29 7.85 -51.93 -0.41 -0.12 16 33 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.08 0.42 8.13 -51.93 -0.42 0.00 16 35 H 0.09 0.67 8.04 -51.93 -0.42 0.26 16 36 H 0.10 0.88 7.31 -51.93 -0.38 0.50 16 37 H 0.07 0.86 7.96 -51.93 -0.41 0.44 16 38 H 0.08 0.78 7.36 -51.93 -0.38 0.40 16 39 H 0.39 6.15 7.35 -40.82 -0.30 5.85 16 40 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.09 1.93 8.06 -52.48 -0.42 1.50 16 42 H 0.10 2.76 6.76 -52.48 -0.35 2.41 16 43 H 0.30 8.26 7.18 -40.82 -0.29 7.97 16 44 H 0.11 3.02 6.42 -52.48 -0.34 2.68 16 45 H 0.08 0.91 7.82 -51.93 -0.41 0.51 16 46 H 0.07 0.79 7.43 -51.92 -0.39 0.40 16 LS Contribution 376.35 15.07 5.67 5.67 Total: -1.00 -34.96 376.35 -9.25 -44.21 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.59 Total: 11.88 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -3.06 Total: -8.90 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.33 Total: -49.66 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.16 Total: -20.45 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.10 Total: 17.25 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.96 -9.25 -44.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364137048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.197 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds