Wall clock time and date at job start Tue Mar 31 2020 17:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 120.00006 * 2 1 4 4 O 1.21283 * 119.99627 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00133 * 180.02562 * 3 2 1 6 6 C 1.52991 * 110.78634 * 61.77548 * 5 3 2 7 7 C 1.55160 * 110.71906 * 185.02197 * 5 3 2 8 8 C 1.55131 * 101.48886 * 82.69081 * 7 5 3 9 9 N 1.47425 * 104.72043 * 37.29119 * 8 7 5 10 10 C 1.34780 * 125.64376 * 155.81616 * 9 8 7 11 11 O 1.21586 * 119.99777 * 179.69725 * 10 9 8 12 12 N 1.34773 * 120.00130 * 359.69564 * 10 9 8 13 13 C 1.39956 * 120.00243 * 184.73681 * 12 10 9 14 14 C 1.39285 * 119.94814 * 213.57468 * 13 12 10 15 15 C 1.38493 * 120.42915 * 179.97438 * 14 13 12 16 16 C 1.37684 * 120.32004 * 0.02562 * 15 14 13 17 17 C 1.40741 * 119.88450 * 359.97438 * 16 15 14 18 18 C 1.41405 * 120.21009 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99548 * 153.55599 * 18 17 16 20 20 C 1.39930 * 120.00219 * 333.56541 * 18 17 16 21 21 N 1.30838 * 119.99701 * 329.95888 * 20 18 17 22 22 Si 1.86801 * 120.00303 * 149.96187 * 20 18 17 23 23 H 1.48501 * 109.46865 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.46976 * 299.99466 * 22 20 18 25 25 H 1.48496 * 109.46985 * 59.99964 * 22 20 18 26 26 C 1.38234 * 119.94821 * 33.82775 * 13 12 10 27 27 C 1.47022 * 108.70634 * 335.55806 * 9 8 7 28 28 H 1.08992 * 109.47388 * 300.00923 * 1 2 3 29 29 H 1.09007 * 109.46762 * 60.00746 * 1 2 3 30 30 H 1.09000 * 109.46586 * 180.02562 * 1 2 3 31 31 H 0.96995 * 120.00249 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47417 * 298.22097 * 6 5 3 33 33 H 1.09007 * 109.46874 * 58.21747 * 6 5 3 34 34 H 1.08995 * 109.47432 * 178.21694 * 6 5 3 35 35 H 1.08997 * 111.00127 * 200.92973 * 7 5 3 36 36 H 1.08995 * 110.99910 * 324.74201 * 7 5 3 37 37 H 1.08999 * 110.49410 * 278.45234 * 8 7 5 38 38 H 1.08995 * 110.34097 * 156.05677 * 8 7 5 39 39 H 0.97003 * 120.00225 * 4.73623 * 12 10 9 40 40 H 1.08001 * 119.78612 * 0.02562 * 14 13 12 41 41 H 1.08003 * 119.83453 * 179.97438 * 15 14 13 42 42 H 1.08006 * 120.05329 * 179.97438 * 16 15 14 43 43 H 0.97000 * 119.99515 * 353.43272 * 21 20 18 44 44 H 1.08007 * 120.15512 * 0.02752 * 26 13 12 45 45 H 1.08997 * 109.88126 * 120.70506 * 27 9 8 46 46 H 1.09007 * 109.87872 * 241.71323 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1884 0.4911 -1.2612 7 6 4.1949 2.6129 0.1266 8 6 4.1239 2.8366 1.6600 9 7 4.4881 1.5338 2.2459 10 6 5.0019 1.3424 3.4772 11 8 5.2608 0.2177 3.8597 12 7 5.2287 2.3976 4.2842 13 6 5.8533 2.2101 5.5226 14 6 5.5041 3.0126 6.6061 15 6 6.1154 2.8353 7.8361 16 6 7.0763 1.8631 8.0010 17 6 7.4394 1.0446 6.9152 18 6 8.4257 0.0444 7.0767 19 1 8.4171 -0.8298 6.4425 20 6 9.4128 0.1871 8.0582 21 7 9.8163 1.3805 8.4115 22 14 10.1545 -1.3262 8.8641 23 1 11.1709 -0.9074 9.8625 24 1 9.0841 -2.1009 9.5418 25 1 10.7984 -2.1732 7.8282 26 6 6.8195 1.2321 5.6671 27 6 4.1923 0.4774 1.2671 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 3.8630 -0.5490 -1.2844 33 1 3.8109 1.0096 -2.1427 34 1 5.2776 0.5310 -1.2549 35 1 5.2219 2.6739 -0.2334 36 1 3.5557 3.3212 -0.4005 37 1 3.1139 3.1177 1.9583 38 1 4.8372 3.6024 1.9646 39 1 4.9591 3.2872 4.0069 40 1 4.7512 3.7776 6.4865 41 1 5.8376 3.4633 8.6697 42 1 7.5506 1.7288 8.9621 43 1 9.5026 2.1611 7.9287 44 1 7.0942 0.6123 4.8262 45 1 5.1031 -0.0713 1.0273 46 1 3.4447 -0.2046 1.6724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364137048.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:48 Heat of formation + Delta-G solvation = -68.054812 kcal Electronic energy + Delta-G solvation = -28254.355061 eV Core-core repulsion = 24335.406301 eV Total energy + Delta-G solvation = -3918.948761 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.11514 -41.07575 -39.45661 -38.26830 -36.43355 -35.76879 -35.04411 -34.03785 -31.65153 -30.81793 -30.04226 -27.95762 -27.40781 -27.03786 -24.68309 -23.37046 -23.20429 -22.77086 -20.99665 -20.69316 -20.11775 -19.30010 -18.33627 -17.46117 -17.13131 -17.01004 -16.70876 -16.33297 -16.24247 -16.00183 -15.66551 -15.38889 -14.72549 -14.65734 -14.54209 -14.41221 -14.13232 -13.90009 -13.77724 -13.72329 -13.51646 -13.36484 -13.23749 -13.13935 -12.78642 -12.44122 -12.35339 -12.24699 -12.15497 -11.94506 -11.85879 -11.58068 -11.28802 -10.97019 -10.87891 -10.82651 -10.19826 -9.86198 -9.62008 -9.23764 -8.82183 -6.46776 0.77022 0.92468 1.39117 1.49188 1.49828 1.61129 1.80411 2.02232 2.16974 2.32447 2.64935 2.84927 3.17629 3.38422 3.53744 3.61568 3.90333 4.15198 4.19585 4.32760 4.40178 4.43768 4.50627 4.53934 4.58145 4.63102 4.76664 4.77941 4.86817 4.88192 4.90011 4.95633 4.97665 5.04028 5.05738 5.20634 5.23616 5.36595 5.53889 5.60677 5.77124 5.82752 5.88609 5.99935 6.26934 6.38213 6.42644 6.79242 6.82099 6.91174 7.13100 7.42376 8.00475 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019738 B = 0.002560 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.276223 B =10933.748819 C =11440.804389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.725 5.725 3 C 0.525 3.475 4 O -0.570 6.570 5 C -0.086 4.086 6 C -0.130 4.130 7 C -0.102 4.102 8 C 0.090 3.910 9 N -0.633 5.633 10 C 0.713 3.287 11 O -0.613 6.613 12 N -0.669 5.669 13 C 0.188 3.812 14 C -0.263 4.263 15 C -0.067 4.067 16 C -0.248 4.248 17 C 0.084 3.916 18 C -0.566 4.566 19 H 0.058 0.942 20 C 0.012 3.988 21 N -0.805 5.805 22 Si 1.113 2.887 23 H -0.264 1.264 24 H -0.266 1.266 25 H -0.261 1.261 26 C -0.240 4.240 27 C 0.135 3.865 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.415 0.585 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.415 0.585 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.089 0.911 43 H 0.283 0.717 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.371 -0.024 -20.079 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.376 5.376 3 C 0.311 3.689 4 O -0.449 6.449 5 C -0.090 4.090 6 C -0.187 4.187 7 C -0.140 4.140 8 C -0.032 4.032 9 N -0.371 5.371 10 C 0.415 3.585 11 O -0.493 6.493 12 N -0.317 5.317 13 C 0.094 3.906 14 C -0.285 4.285 15 C -0.086 4.086 16 C -0.268 4.268 17 C 0.081 3.919 18 C -0.594 4.594 19 H 0.077 0.923 20 C -0.205 4.205 21 N -0.427 5.427 22 Si 0.930 3.070 23 H -0.188 1.188 24 H -0.191 1.191 25 H -0.185 1.185 26 C -0.262 4.262 27 C 0.012 3.988 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.126 0.874 31 H 0.252 0.748 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.252 0.748 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.569 -0.530 -18.628 22.478 hybrid contribution -1.109 0.579 -1.116 1.677 sum -13.679 0.049 -19.743 24.019 Atomic orbital electron populations 1.21673 0.78641 1.04203 1.01471 1.45798 1.08534 1.08775 1.74521 1.20516 0.89831 0.83752 0.74762 1.90679 1.70771 1.32560 1.50901 1.21822 0.91044 0.99057 0.97040 1.21793 1.02627 1.01051 0.93264 1.22816 1.03265 0.94244 0.93632 1.22607 1.00856 0.84877 0.94818 1.47557 1.66636 1.10310 1.12622 1.15611 0.78414 0.84228 0.80244 1.90954 1.59365 1.23986 1.74952 1.42389 1.62281 1.09918 1.17135 1.17361 0.91815 0.97127 0.84269 1.20398 1.08431 1.07432 0.92196 1.20761 0.94749 0.96316 0.96743 1.21084 1.04749 1.03383 0.97607 1.17823 0.91911 0.91352 0.90835 1.20629 1.12852 1.06253 1.19667 0.92345 1.28378 0.93937 1.04506 0.93717 1.70568 1.34578 1.00711 1.36821 0.83075 0.76566 0.70687 0.76663 1.18801 1.19095 1.18505 1.20904 1.03773 1.04552 0.96967 1.21960 1.01026 0.89530 0.86305 0.93838 0.92268 0.87396 0.74840 0.90042 0.90431 0.89839 0.87692 0.87921 0.91525 0.89151 0.74761 0.85049 0.85328 0.89231 0.90597 0.89801 0.89842 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.70 127.77 1.37 2.35 16 2 N -0.72 -9.78 5.36 -484.51 -2.60 -12.38 16 3 C 0.53 9.88 6.30 87.66 0.55 10.43 16 4 O -0.57 -14.78 15.41 -3.04 -0.05 -14.83 16 5 C -0.09 -1.32 0.76 -51.74 -0.04 -1.36 16 6 C -0.13 -1.15 8.42 71.98 0.61 -0.54 16 7 C -0.10 -1.58 5.76 32.06 0.18 -1.40 16 8 C 0.09 1.87 6.29 86.93 0.55 2.42 16 9 N -0.63 -17.75 3.32 -829.30 -2.76 -20.50 16 10 C 0.71 27.83 8.23 179.05 1.47 29.31 16 11 O -0.61 -30.25 14.36 -3.99 -0.06 -30.31 16 12 N -0.67 -25.15 5.29 -317.33 -1.68 -26.83 16 13 C 0.19 8.81 6.27 38.09 0.24 9.05 16 14 C -0.26 -11.31 9.97 22.58 0.23 -11.09 16 15 C -0.07 -3.06 10.02 22.20 0.22 -2.84 16 16 C -0.25 -13.39 8.16 22.75 0.19 -13.20 16 17 C 0.08 4.90 5.24 -21.31 -0.11 4.79 16 18 C -0.57 -33.45 8.93 23.46 0.21 -33.24 16 19 H 0.06 3.52 8.00 -2.91 -0.02 3.49 16 20 C 0.01 0.65 4.80 85.25 0.41 1.06 16 21 N -0.80 -44.86 12.41 21.82 0.27 -44.59 16 22 Si 1.11 45.74 30.02 68.60 2.06 47.80 16 23 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 25 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 26 C -0.24 -13.35 8.39 22.85 0.19 -13.16 16 27 C 0.13 2.96 6.00 86.73 0.52 3.48 16 28 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.42 3.49 8.34 -92.71 -0.77 2.72 16 32 H 0.08 0.47 7.85 -2.39 -0.02 0.45 16 33 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.08 0.67 8.13 -2.39 -0.02 0.65 16 35 H 0.10 1.30 8.04 -2.39 -0.02 1.28 16 36 H 0.10 1.60 7.31 -2.39 -0.02 1.59 16 37 H 0.07 1.50 7.96 -2.39 -0.02 1.48 16 38 H 0.09 1.63 7.36 -2.39 -0.02 1.61 16 39 H 0.41 12.02 7.35 -92.71 -0.68 11.34 16 40 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 41 H 0.13 4.93 8.06 -2.91 -0.02 4.90 16 42 H 0.09 4.98 6.76 -2.91 -0.02 4.96 16 43 H 0.28 16.34 7.18 -92.71 -0.67 15.68 16 44 H 0.08 4.99 6.42 -2.91 -0.02 4.97 16 45 H 0.08 1.81 7.82 -2.39 -0.02 1.80 16 46 H 0.06 1.43 7.43 -2.38 -0.02 1.41 16 Total: -1.00 -80.52 376.35 1.64 -78.87 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: -0.33 Total: 36.72 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 6.78 Total: -13.96 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -6.76 Total: -104.30 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -0.10 Total: -45.14 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.06 Total: 47.80 kcal Total: -80.52 1.64 -78.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364137048.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.818 kcal (2) G-P(sol) polarization free energy of solvation -80.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds