Wall clock time and date at job start Tue Mar 31 2020 17:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34780 * 119.99916 * 2 1 4 4 O 1.21277 * 120.00283 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99622 * 179.97438 * 3 2 1 6 6 C 1.52996 * 110.30338 * 300.69855 * 5 3 2 7 7 C 1.54288 * 110.33806 * 178.52276 * 5 3 2 8 8 C 1.54388 * 104.95874 * 241.02139 * 7 5 3 9 9 N 1.48149 * 104.61814 * 23.87222 * 8 7 5 10 10 C 1.34772 * 127.83865 * 140.39172 * 9 8 7 11 11 O 1.21594 * 119.99864 * 179.97438 * 10 9 8 12 12 N 1.34770 * 120.00064 * 359.97438 * 10 9 8 13 13 C 1.39963 * 120.00200 * 174.96542 * 12 10 9 14 14 C 1.39287 * 119.94856 * 146.74407 * 13 12 10 15 15 C 1.38494 * 120.42740 * 179.97438 * 14 13 12 16 16 C 1.37684 * 120.32197 * 0.03802 * 15 14 13 17 17 C 1.40741 * 119.88199 * 359.97438 * 16 15 14 18 18 C 1.41408 * 120.21055 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00134 * 151.43000 * 18 17 16 20 20 C 1.39939 * 119.99853 * 331.43920 * 18 17 16 21 21 N 1.30827 * 119.99796 * 166.25108 * 20 18 17 22 22 Si 1.86794 * 119.99945 * 346.24928 * 20 18 17 23 23 H 1.48495 * 109.47283 * 95.31497 * 22 20 18 24 24 H 1.48496 * 109.47365 * 215.31392 * 22 20 18 25 25 H 1.48505 * 109.47517 * 335.31586 * 22 20 18 26 26 C 1.38239 * 119.94458 * 326.46673 * 13 12 10 27 27 C 1.48150 * 104.32215 * 320.40977 * 9 8 7 28 28 H 1.08998 * 109.46980 * 300.00339 * 1 2 3 29 29 H 1.09002 * 109.46872 * 59.99998 * 1 2 3 30 30 H 1.09002 * 109.47243 * 180.02562 * 1 2 3 31 31 H 0.97005 * 120.00239 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46954 * 297.82532 * 6 5 3 33 33 H 1.09002 * 109.47115 * 177.82895 * 6 5 3 34 34 H 1.08997 * 109.47667 * 57.82908 * 6 5 3 35 35 H 1.08997 * 110.34267 * 359.89411 * 7 5 3 36 36 H 1.08998 * 110.34056 * 122.15284 * 7 5 3 37 37 H 1.09006 * 110.40564 * 142.65109 * 8 7 5 38 38 H 1.08996 * 110.40883 * 264.96441 * 8 7 5 39 39 H 0.97003 * 120.00242 * 354.96459 * 12 10 9 40 40 H 1.07998 * 119.78212 * 359.97438 * 14 13 12 41 41 H 1.07999 * 119.83515 * 180.02562 * 15 14 13 42 42 H 1.07999 * 120.05582 * 180.02562 * 16 15 14 43 43 H 0.97006 * 119.99626 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.15955 * 359.97438 * 26 13 12 45 45 H 1.08993 * 110.40672 * 280.80637 * 27 9 8 46 46 H 1.08998 * 110.40461 * 158.37089 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1763 0.4349 1.2348 7 6 4.1823 2.6133 -0.0368 8 6 4.9989 2.7018 -1.3441 9 7 4.4345 1.6406 -2.2101 10 6 4.2003 1.6931 -3.5363 11 8 3.7293 0.7296 -4.1091 12 7 4.4883 2.8136 -4.2275 13 6 4.3448 2.8335 -5.6196 14 6 3.9559 4.0067 -6.2618 15 6 3.8113 4.0377 -7.6389 16 6 4.0499 2.9077 -8.3884 17 6 4.4433 1.7150 -7.7532 18 6 4.6907 0.5505 -8.5163 19 1 5.3963 -0.1869 -8.1630 20 6 4.0215 0.3537 -9.7295 21 7 4.4332 -0.5680 -10.5616 22 14 2.5402 1.4070 -10.1605 23 1 2.9745 2.5516 -11.0009 24 1 1.5527 0.5894 -10.9099 25 1 1.9158 1.9173 -8.9135 26 6 4.5948 1.6903 -6.3555 27 6 4.1854 0.5085 -1.2874 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.9500 -0.8401 0.0004 32 1 3.8521 0.9577 2.1347 33 1 5.2655 0.4093 1.2019 34 1 3.7892 -0.5840 1.2471 35 1 3.3557 3.3236 -0.0575 36 1 4.8236 2.8020 0.8241 37 1 4.8691 3.6797 -1.8078 38 1 6.0540 2.5127 -1.1467 39 1 4.7952 3.6064 -3.7602 40 1 3.7658 4.8979 -5.6822 41 1 3.5096 4.9526 -8.1270 42 1 3.9362 2.9368 -9.4620 43 1 3.9691 -0.7047 -11.4024 44 1 4.9011 0.7815 -5.8588 45 1 5.1131 -0.0251 -1.0814 46 1 3.4419 -0.1683 -1.7083 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364137057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:53 Heat of formation + Delta-G solvation = -30.778256 kcal Electronic energy + Delta-G solvation = -28532.768831 eV Core-core repulsion = 24615.436504 eV Total energy + Delta-G solvation = -3917.332328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.99190 -39.71681 -37.98799 -36.95898 -34.92537 -34.44421 -33.37833 -32.86815 -30.25429 -29.89480 -28.72279 -27.19421 -26.44834 -25.14031 -24.15579 -22.17026 -21.67384 -20.81621 -19.81697 -19.57162 -18.26243 -17.68280 -17.00550 -16.28411 -16.07920 -15.84376 -15.61138 -15.21550 -14.72170 -14.57434 -14.37178 -14.22636 -13.84315 -13.47852 -13.28389 -13.08742 -12.75059 -12.71525 -12.65393 -12.54544 -12.38793 -12.34461 -11.96718 -11.71307 -11.58307 -11.38888 -11.05347 -10.94983 -10.66349 -10.63681 -10.04054 -9.95226 -9.84580 -9.56342 -9.38817 -9.15387 -9.03070 -8.71511 -7.60674 -7.03546 -6.85483 -4.41221 2.39420 2.50465 2.67527 2.74395 2.92386 3.17256 3.30484 3.41567 3.55424 3.98248 4.07692 4.17918 4.31380 4.39923 4.59467 4.65836 4.90847 4.95858 5.02850 5.13122 5.25228 5.26494 5.36983 5.45433 5.49667 5.52084 5.57388 5.58518 5.66009 5.90049 6.01687 6.07246 6.15438 6.25613 6.44356 6.66184 6.76691 6.89251 7.09005 7.18496 7.29691 7.52557 7.63553 7.69211 7.96184 7.96730 8.14045 8.28162 8.43993 8.73176 8.86225 8.94103 10.17119 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.002978 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.980126 B = 9401.362514 C = 9846.787152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.529 3.471 4 O -0.533 6.533 5 C -0.100 4.100 6 C -0.134 4.134 7 C -0.123 4.123 8 C 0.102 3.898 9 N -0.643 5.643 10 C 0.724 3.276 11 O -0.559 6.559 12 N -0.679 5.679 13 C 0.182 3.818 14 C -0.266 4.266 15 C -0.063 4.063 16 C -0.251 4.251 17 C 0.104 3.896 18 C -0.438 4.438 19 H 0.090 0.910 20 C 0.082 3.918 21 N -0.814 5.814 22 Si 0.915 3.085 23 H -0.272 1.272 24 H -0.295 1.295 25 H -0.240 1.240 26 C -0.197 4.197 27 C 0.138 3.862 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.402 0.598 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.396 0.604 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.284 0.716 44 H 0.115 0.885 45 H 0.083 0.917 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 2.225 23.678 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.384 5.384 3 C 0.314 3.686 4 O -0.409 6.409 5 C -0.104 4.104 6 C -0.191 4.191 7 C -0.161 4.161 8 C -0.021 4.021 9 N -0.383 5.383 10 C 0.426 3.574 11 O -0.434 6.434 12 N -0.325 5.325 13 C 0.089 3.911 14 C -0.287 4.287 15 C -0.082 4.082 16 C -0.270 4.270 17 C 0.100 3.900 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.136 4.136 21 N -0.438 5.438 22 Si 0.743 3.257 23 H -0.199 1.199 24 H -0.223 1.223 25 H -0.164 1.164 26 C -0.219 4.219 27 C 0.013 3.987 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.236 0.764 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.230 0.770 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.133 0.867 45 H 0.101 0.899 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.588 2.061 22.907 23.054 hybrid contribution -0.300 0.366 -0.080 0.480 sum -1.888 2.426 22.826 23.033 Atomic orbital electron populations 1.21552 0.79373 1.02361 1.02389 1.45733 1.07914 1.08699 1.76103 1.20288 0.89572 0.83620 0.75080 1.90677 1.69942 1.31296 1.48953 1.21775 0.92124 0.98908 0.97608 1.21829 1.02053 0.99879 0.95379 1.22660 1.00929 0.94945 0.97576 1.22349 0.97459 0.91997 0.90340 1.47992 1.68171 1.16580 1.05567 1.15346 0.78880 0.83895 0.79236 1.91009 1.49383 1.35950 1.67019 1.42575 1.69963 1.13386 1.06602 1.17298 0.99202 0.95569 0.79029 1.20009 1.17463 0.96713 0.94520 1.20322 0.97997 0.96810 0.93022 1.20955 1.14240 0.93883 0.97962 1.17600 0.88765 0.92426 0.91219 1.19492 1.21441 1.04256 1.01490 0.89224 1.26161 0.98368 0.94684 0.94375 1.69669 1.37032 1.29105 1.08023 0.86272 0.80740 0.78709 0.79987 1.19886 1.22266 1.16356 1.20959 1.10885 0.97092 0.92963 1.22159 1.01256 0.89122 0.86131 0.92268 0.92040 0.90532 0.76404 0.91512 0.90684 0.91840 0.88483 0.89606 0.90515 0.90797 0.76990 0.88719 0.88463 0.88388 0.90541 0.86714 0.89929 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.70 59.84 0.64 1.37 16 2 N -0.73 -6.60 5.33 -67.08 -0.36 -6.96 16 3 C 0.53 6.13 6.47 -10.98 -0.07 6.06 16 4 O -0.53 -8.30 15.26 5.56 0.08 -8.21 16 5 C -0.10 -0.87 0.86 -154.26 -0.13 -1.00 16 6 C -0.13 -0.69 8.17 37.16 0.30 -0.39 16 7 C -0.12 -1.06 6.24 -25.33 -0.16 -1.22 16 8 C 0.10 0.97 6.94 -2.41 -0.02 0.95 16 9 N -0.64 -8.88 3.32 -175.02 -0.58 -9.46 16 10 C 0.72 13.78 8.30 -86.93 -0.72 13.06 16 11 O -0.56 -13.22 14.29 5.28 0.08 -13.14 16 12 N -0.68 -12.51 5.31 -14.27 -0.08 -12.58 16 13 C 0.18 4.10 6.27 -83.75 -0.53 3.57 16 14 C -0.27 -5.69 9.97 -39.10 -0.39 -6.08 16 15 C -0.06 -1.40 10.02 -39.69 -0.40 -1.80 16 16 C -0.25 -6.33 6.94 -38.84 -0.27 -6.60 16 17 C 0.10 2.81 5.18 -106.85 -0.55 2.26 16 18 C -0.44 -12.61 9.61 -37.74 -0.36 -12.97 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 20 C 0.08 2.27 5.46 -17.34 -0.09 2.18 16 21 N -0.81 -22.64 13.93 55.55 0.77 -21.87 16 22 Si 0.92 22.08 24.37 -169.99 -4.14 17.94 16 23 H -0.27 -6.27 6.76 56.52 0.38 -5.89 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.24 -6.03 6.51 56.52 0.37 -5.66 16 26 C -0.20 -5.09 8.39 -38.69 -0.32 -5.42 16 27 C 0.14 1.48 6.12 -2.41 -0.01 1.47 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.40 2.49 8.14 -40.82 -0.33 2.16 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 34 H 0.06 0.25 7.54 -51.93 -0.39 -0.14 16 35 H 0.10 1.08 6.46 -51.93 -0.34 0.74 16 36 H 0.09 0.51 7.71 -51.93 -0.40 0.11 16 37 H 0.08 0.69 6.82 -51.93 -0.35 0.33 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.40 5.74 7.20 -40.82 -0.29 5.44 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 42 H 0.10 2.44 4.23 -52.49 -0.22 2.22 16 43 H 0.28 7.16 8.30 -40.82 -0.34 6.82 16 44 H 0.11 3.09 6.41 -52.48 -0.34 2.76 16 45 H 0.08 0.71 7.83 -51.93 -0.41 0.30 16 46 H 0.09 1.07 7.29 -51.93 -0.38 0.69 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -36.41 368.75 -8.20 -44.61 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.44 Total: 8.67 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -3.09 Total: -4.55 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.24 Total: -50.87 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: 0.16 Total: -21.36 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.41 -8.20 -44.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364137057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.828 kcal (2) G-P(sol) polarization free energy of solvation -36.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds