Wall clock time and date at job start Tue Mar 31 2020 17:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34780 * 119.99916 * 2 1 4 4 O 1.21277 * 120.00283 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99622 * 179.97438 * 3 2 1 6 6 C 1.52996 * 110.30338 * 300.69855 * 5 3 2 7 7 C 1.54288 * 110.33806 * 178.52276 * 5 3 2 8 8 C 1.54388 * 104.95874 * 241.02139 * 7 5 3 9 9 N 1.48149 * 104.61814 * 23.87222 * 8 7 5 10 10 C 1.34772 * 127.83865 * 140.39172 * 9 8 7 11 11 O 1.21594 * 119.99864 * 179.97438 * 10 9 8 12 12 N 1.34770 * 120.00064 * 359.97438 * 10 9 8 13 13 C 1.39963 * 120.00200 * 174.96542 * 12 10 9 14 14 C 1.39287 * 119.94856 * 146.74407 * 13 12 10 15 15 C 1.38494 * 120.42740 * 179.97438 * 14 13 12 16 16 C 1.37684 * 120.32197 * 0.03802 * 15 14 13 17 17 C 1.40741 * 119.88199 * 359.97438 * 16 15 14 18 18 C 1.41408 * 120.21055 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00134 * 151.43000 * 18 17 16 20 20 C 1.39939 * 119.99853 * 331.43920 * 18 17 16 21 21 N 1.30827 * 119.99796 * 166.25108 * 20 18 17 22 22 Si 1.86794 * 119.99945 * 346.24928 * 20 18 17 23 23 H 1.48495 * 109.47283 * 95.31497 * 22 20 18 24 24 H 1.48496 * 109.47365 * 215.31392 * 22 20 18 25 25 H 1.48505 * 109.47517 * 335.31586 * 22 20 18 26 26 C 1.38239 * 119.94458 * 326.46673 * 13 12 10 27 27 C 1.48150 * 104.32215 * 320.40977 * 9 8 7 28 28 H 1.08998 * 109.46980 * 300.00339 * 1 2 3 29 29 H 1.09002 * 109.46872 * 59.99998 * 1 2 3 30 30 H 1.09002 * 109.47243 * 180.02562 * 1 2 3 31 31 H 0.97005 * 120.00239 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46954 * 297.82532 * 6 5 3 33 33 H 1.09002 * 109.47115 * 177.82895 * 6 5 3 34 34 H 1.08997 * 109.47667 * 57.82908 * 6 5 3 35 35 H 1.08997 * 110.34267 * 359.89411 * 7 5 3 36 36 H 1.08998 * 110.34056 * 122.15284 * 7 5 3 37 37 H 1.09006 * 110.40564 * 142.65109 * 8 7 5 38 38 H 1.08996 * 110.40883 * 264.96441 * 8 7 5 39 39 H 0.97003 * 120.00242 * 354.96459 * 12 10 9 40 40 H 1.07998 * 119.78212 * 359.97438 * 14 13 12 41 41 H 1.07999 * 119.83515 * 180.02562 * 15 14 13 42 42 H 1.07999 * 120.05582 * 180.02562 * 16 15 14 43 43 H 0.97006 * 119.99626 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.15955 * 359.97438 * 26 13 12 45 45 H 1.08993 * 110.40672 * 280.80637 * 27 9 8 46 46 H 1.08998 * 110.40461 * 158.37089 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1763 0.4349 1.2348 7 6 4.1823 2.6133 -0.0368 8 6 4.9989 2.7018 -1.3441 9 7 4.4345 1.6406 -2.2101 10 6 4.2003 1.6931 -3.5363 11 8 3.7293 0.7296 -4.1091 12 7 4.4883 2.8136 -4.2275 13 6 4.3448 2.8335 -5.6196 14 6 3.9559 4.0067 -6.2618 15 6 3.8113 4.0377 -7.6389 16 6 4.0499 2.9077 -8.3884 17 6 4.4433 1.7150 -7.7532 18 6 4.6907 0.5505 -8.5163 19 1 5.3963 -0.1869 -8.1630 20 6 4.0215 0.3537 -9.7295 21 7 4.4332 -0.5680 -10.5616 22 14 2.5402 1.4070 -10.1605 23 1 2.9745 2.5516 -11.0009 24 1 1.5527 0.5894 -10.9099 25 1 1.9158 1.9173 -8.9135 26 6 4.5948 1.6903 -6.3555 27 6 4.1854 0.5085 -1.2874 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.9500 -0.8401 0.0004 32 1 3.8521 0.9577 2.1347 33 1 5.2655 0.4093 1.2019 34 1 3.7892 -0.5840 1.2471 35 1 3.3557 3.3236 -0.0575 36 1 4.8236 2.8020 0.8241 37 1 4.8691 3.6797 -1.8078 38 1 6.0540 2.5127 -1.1467 39 1 4.7952 3.6064 -3.7602 40 1 3.7658 4.8979 -5.6822 41 1 3.5096 4.9526 -8.1270 42 1 3.9362 2.9368 -9.4620 43 1 3.9691 -0.7047 -11.4024 44 1 4.9011 0.7815 -5.8588 45 1 5.1131 -0.0251 -1.0814 46 1 3.4419 -0.1683 -1.7083 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364137057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:52 Heat of formation + Delta-G solvation = -58.365888 kcal Electronic energy + Delta-G solvation = -28533.965121 eV Core-core repulsion = 24615.436504 eV Total energy + Delta-G solvation = -3918.528617 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.01554 -41.05117 -39.47460 -38.29139 -36.22659 -35.78686 -35.09668 -34.00856 -32.19123 -30.75572 -30.34986 -27.88694 -27.48185 -27.03752 -25.10367 -23.33563 -22.99621 -22.70880 -21.02605 -20.62915 -19.75728 -19.20246 -18.06372 -17.77676 -17.23721 -17.19946 -16.90475 -16.48835 -16.22788 -16.07626 -15.64224 -15.33231 -15.10893 -14.75659 -14.55204 -14.34645 -14.02792 -13.88717 -13.84712 -13.48965 -13.47939 -13.30265 -13.17671 -13.10978 -12.89789 -12.66271 -12.52180 -12.41823 -12.07436 -11.81594 -11.69974 -11.62103 -11.45627 -11.01019 -10.90775 -10.85825 -10.22040 -9.85791 -9.55742 -8.90586 -8.81020 -6.54560 0.69612 0.79603 1.23185 1.38912 1.42562 1.48433 1.53140 2.02450 2.13048 2.21051 2.61689 2.89440 3.32994 3.48580 3.52462 3.71677 3.99886 4.24931 4.30177 4.31646 4.38023 4.42420 4.50332 4.53235 4.57335 4.61522 4.69079 4.77906 4.84356 4.88798 4.90300 4.96517 5.00031 5.00733 5.16515 5.20661 5.30992 5.36055 5.40689 5.57959 5.69706 5.77408 5.90141 6.03666 6.23233 6.36969 6.44433 6.72800 6.78108 6.86596 7.15780 7.46933 8.18811 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.002978 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.980126 B = 9401.362514 C = 9846.787152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.725 5.725 3 C 0.516 3.484 4 O -0.581 6.581 5 C -0.089 4.089 6 C -0.129 4.129 7 C -0.118 4.118 8 C 0.096 3.904 9 N -0.642 5.642 10 C 0.715 3.285 11 O -0.616 6.616 12 N -0.669 5.669 13 C 0.187 3.813 14 C -0.243 4.243 15 C -0.061 4.061 16 C -0.263 4.263 17 C 0.084 3.916 18 C -0.483 4.483 19 H 0.046 0.954 20 C 0.044 3.956 21 N -0.855 5.855 22 Si 0.973 3.027 23 H -0.247 1.247 24 H -0.281 1.281 25 H -0.256 1.256 26 C -0.222 4.222 27 C 0.130 3.870 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.109 0.891 31 H 0.416 0.584 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.417 0.583 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.101 0.899 43 H 0.294 0.706 44 H 0.087 0.913 45 H 0.113 0.887 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 4.889 26.219 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.377 5.377 3 C 0.303 3.697 4 O -0.461 6.461 5 C -0.093 4.093 6 C -0.186 4.186 7 C -0.156 4.156 8 C -0.026 4.026 9 N -0.380 5.380 10 C 0.417 3.583 11 O -0.496 6.496 12 N -0.317 5.317 13 C 0.093 3.907 14 C -0.264 4.264 15 C -0.079 4.079 16 C -0.283 4.283 17 C 0.081 3.919 18 C -0.513 4.513 19 H 0.065 0.935 20 C -0.170 4.170 21 N -0.481 5.481 22 Si 0.797 3.203 23 H -0.172 1.172 24 H -0.208 1.208 25 H -0.180 1.180 26 C -0.244 4.244 27 C 0.007 3.993 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.128 0.872 31 H 0.253 0.747 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.141 0.859 37 H 0.101 0.899 38 H 0.124 0.876 39 H 0.256 0.744 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.119 0.881 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.131 0.869 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.581 4.722 25.533 26.014 hybrid contribution -0.262 -0.383 -0.577 0.741 sum -1.843 4.339 24.956 25.397 Atomic orbital electron populations 1.21637 0.79148 1.04144 1.01084 1.45772 1.08332 1.08916 1.74656 1.20945 0.91019 0.83440 0.74296 1.90653 1.71134 1.32940 1.51344 1.21778 0.89991 0.99466 0.98066 1.21874 1.03364 1.00094 0.93295 1.22669 1.00489 0.94024 0.98405 1.22736 0.99071 0.91008 0.89743 1.48040 1.66800 1.18912 1.04235 1.15595 0.78675 0.83124 0.80856 1.90976 1.51891 1.37799 1.68910 1.42359 1.69865 1.14377 1.05138 1.17405 0.97525 0.94909 0.80911 1.20564 1.13769 0.97378 0.94726 1.20833 0.96326 0.97328 0.93430 1.21108 1.14567 0.94062 0.98525 1.17722 0.89658 0.92757 0.91744 1.19458 1.23167 1.05082 1.03555 0.93544 1.26872 1.00394 0.95921 0.93797 1.69695 1.38661 1.30848 1.08929 0.85405 0.77492 0.78078 0.79352 1.17232 1.20799 1.17993 1.20881 1.12804 0.97739 0.93014 1.22481 1.02285 0.88401 0.86132 0.92164 0.94750 0.87237 0.74727 0.90923 0.88441 0.90541 0.91089 0.85896 0.89904 0.87558 0.74443 0.84168 0.83985 0.88131 0.89542 0.89477 0.86879 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 10.70 127.77 1.37 2.75 16 2 N -0.73 -12.55 5.33 -484.52 -2.58 -15.14 16 3 C 0.52 11.60 6.47 87.66 0.57 12.17 16 4 O -0.58 -18.25 15.26 -3.02 -0.05 -18.30 16 5 C -0.09 -1.34 0.86 -52.02 -0.04 -1.39 16 6 C -0.13 -0.83 8.17 71.98 0.59 -0.24 16 7 C -0.12 -1.68 6.24 31.50 0.20 -1.48 16 8 C 0.10 1.52 6.94 86.53 0.60 2.12 16 9 N -0.64 -16.87 3.32 -825.89 -2.74 -19.60 16 10 C 0.71 27.30 8.30 179.06 1.49 28.78 16 11 O -0.62 -30.52 14.29 -4.01 -0.06 -30.58 16 12 N -0.67 -23.76 5.31 -317.32 -1.69 -25.45 16 13 C 0.19 8.25 6.27 38.10 0.24 8.49 16 14 C -0.24 -9.50 9.97 22.58 0.23 -9.28 16 15 C -0.06 -2.50 10.02 22.20 0.22 -2.27 16 16 C -0.26 -13.04 6.94 22.75 0.16 -12.88 16 17 C 0.08 4.75 5.18 -21.31 -0.11 4.64 16 18 C -0.48 -29.89 9.61 23.46 0.23 -29.66 16 19 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 20 C 0.04 2.52 5.46 85.25 0.47 2.99 16 21 N -0.85 -49.96 13.93 21.82 0.30 -49.66 16 22 Si 0.97 46.05 24.37 68.60 1.67 47.72 16 23 H -0.25 -10.62 6.76 99.48 0.67 -9.94 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.26 -12.62 6.51 99.48 0.65 -11.97 16 26 C -0.22 -11.95 8.39 22.85 0.19 -11.76 16 27 C 0.13 2.60 6.12 86.53 0.53 3.13 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.42 4.60 8.14 -92.70 -0.75 3.85 16 32 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.10 0.27 8.10 -2.39 -0.02 0.25 16 34 H 0.08 0.32 7.54 -2.39 -0.02 0.30 16 35 H 0.07 1.47 6.46 -2.39 -0.02 1.45 16 36 H 0.12 0.87 7.71 -2.39 -0.02 0.85 16 37 H 0.08 1.21 6.82 -2.38 -0.02 1.20 16 38 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.42 10.89 7.20 -92.71 -0.67 10.22 16 40 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 41 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 42 H 0.10 4.88 4.23 -2.91 -0.01 4.87 16 43 H 0.29 15.35 8.30 -92.70 -0.77 14.58 16 44 H 0.09 5.09 6.41 -2.91 -0.02 5.07 16 45 H 0.11 1.60 7.83 -2.39 -0.02 1.58 16 46 H 0.06 1.58 7.29 -2.39 -0.02 1.56 16 Total: -1.00 -87.94 368.75 1.28 -86.65 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.49 Total: 28.25 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 6.91 Total: -3.90 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -6.71 Total: -109.85 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -0.10 Total: -48.88 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.67 Total: 47.72 kcal Total: -87.94 1.28 -86.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364137057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.288 kcal (2) G-P(sol) polarization free energy of solvation -87.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds