Wall clock time and date at job start Tue Mar 31 2020 16:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37990 * 119.49994 * 2 1 4 4 C 1.39977 * 119.17397 * 179.77519 * 3 2 1 5 5 C 1.48164 * 120.88267 * 180.21834 * 4 3 2 6 6 O 1.21513 * 119.99981 * 173.26458 * 5 4 3 7 7 N 1.34777 * 120.00175 * 353.26109 * 5 4 3 8 8 C 1.47420 * 125.65121 * 185.66866 * 7 5 4 9 9 C 1.54907 * 104.83484 * 204.09603 * 8 7 5 10 10 C 1.55163 * 101.58203 * 322.99033 * 9 8 7 11 11 O 1.42898 * 110.72027 * 277.14458 * 10 9 8 12 12 C 1.50696 * 110.71854 * 154.04263 * 10 9 8 13 13 H 1.07995 * 120.00327 * 359.97438 * 12 10 9 14 14 C 1.37880 * 119.99646 * 180.02562 * 12 10 9 15 15 N 1.31517 * 119.99993 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99996 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46673 * 89.99975 * 16 14 12 18 18 H 1.48498 * 109.46988 * 210.00128 * 16 14 12 19 19 H 1.48501 * 109.46968 * 330.00325 * 16 14 12 20 20 C 1.47021 * 125.64521 * 5.36544 * 7 5 4 21 21 C 1.39542 * 118.23673 * 0.48197 * 4 3 2 22 22 C 1.39074 * 118.92916 * 359.75944 * 21 4 3 23 23 N 1.39032 * 119.64242 * 180.02562 * 22 21 4 24 24 C 1.46496 * 119.99917 * 359.53560 * 23 22 21 25 25 C 1.52999 * 117.50219 * 230.63989 * 24 23 22 26 26 C 1.53002 * 117.49672 * 161.97900 * 24 23 22 27 27 N 1.31891 * 119.50189 * 180.26760 * 2 1 3 28 28 H 1.08995 * 109.47248 * 269.72859 * 1 2 3 29 29 H 1.09006 * 109.46863 * 149.72926 * 1 2 3 30 30 H 1.08999 * 109.47179 * 29.72959 * 1 2 3 31 31 H 1.08002 * 120.41676 * 0.02562 * 3 2 1 32 32 H 1.09007 * 110.36905 * 322.93684 * 8 7 5 33 33 H 1.09000 * 110.36817 * 85.25662 * 8 7 5 34 34 H 1.08991 * 111.00479 * 81.06560 * 9 8 7 35 35 H 1.09004 * 111.00576 * 204.88089 * 9 8 7 36 36 H 0.96700 * 114.00130 * 180.02562 * 11 10 9 37 37 H 0.97006 * 119.99846 * 180.02562 * 15 14 12 38 38 H 1.08994 * 109.88180 * 298.39155 * 20 7 5 39 39 H 1.08998 * 109.88704 * 59.55845 * 20 7 5 40 40 H 1.07996 * 120.53381 * 179.73034 * 21 4 3 41 41 H 0.97002 * 120.00045 * 179.53888 * 23 22 21 42 42 H 1.09004 * 115.55286 * 16.31261 * 24 23 22 43 43 H 1.09003 * 117.49672 * 359.97438 * 25 24 23 44 44 H 1.09003 * 117.50232 * 145.02318 * 25 24 23 45 45 H 1.09004 * 117.49949 * 214.97759 * 26 24 23 46 46 H 1.09000 * 117.49993 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1865 1.2010 0.0000 4 6 3.5862 1.1930 0.0048 5 6 4.3539 2.4603 0.0098 6 8 5.5621 2.4382 0.1373 7 7 3.7122 3.6375 -0.1271 8 6 4.3563 4.9572 -0.2573 9 6 3.2898 5.9690 0.2311 10 6 1.9837 5.3312 -0.3119 11 8 1.7802 5.6841 -1.6816 12 6 0.8005 5.7450 0.5248 13 1 0.9406 6.4010 1.3711 14 6 -0.4607 5.2851 0.2103 15 7 -0.6310 4.4850 -0.8195 16 14 -1.9272 5.7973 1.2478 17 1 -2.5141 7.0438 0.6938 18 1 -2.9477 4.7186 1.2290 19 1 -1.4855 6.0366 2.6452 20 6 2.2539 3.8176 -0.1777 21 6 4.2394 -0.0400 -0.0009 22 6 3.4788 -1.2043 -0.0060 23 7 4.1142 -2.4409 -0.0112 24 6 5.5774 -2.5124 -0.0216 25 6 6.2336 -3.4060 -1.0760 26 6 6.2229 -3.8362 0.3930 27 7 2.1565 -1.1479 -0.0054 28 1 -0.3633 -0.0049 1.0276 29 1 -0.3633 -0.8876 -0.5181 30 1 -0.3633 0.8924 -0.5096 31 1 1.6451 2.1355 0.0004 32 1 5.2450 5.0093 0.3718 33 1 4.6154 5.1519 -1.2980 34 1 3.2741 6.0251 1.3194 35 1 3.4558 6.9534 -0.2065 36 1 0.9765 5.3108 -2.0687 37 1 -1.5184 4.1617 -1.0410 38 1 1.8447 3.2883 -1.0382 39 1 1.8019 3.4423 0.7403 40 1 5.3183 -0.0894 -0.0019 41 1 3.5888 -3.2562 -0.0080 42 1 6.0951 -1.5928 0.2515 43 1 5.5766 -3.9409 -1.7618 44 1 7.1831 -3.0745 -1.4964 45 1 7.1654 -3.7876 0.9384 46 1 5.5589 -4.6540 0.6730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001469405154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:05 Heat of formation + Delta-G solvation = 6.494358 kcal Electronic energy + Delta-G solvation = -28933.372245 eV Core-core repulsion = 25017.656179 eV Total energy + Delta-G solvation = -3915.716066 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.55879 -39.20292 -37.86288 -37.30744 -34.43420 -34.02163 -32.73349 -32.26809 -30.57858 -29.95311 -28.17468 -26.78354 -25.55522 -24.19257 -23.19109 -22.65444 -21.96092 -20.89421 -19.73976 -19.21163 -17.68559 -17.20341 -16.97648 -16.27066 -15.86856 -15.32758 -15.02256 -14.98219 -14.68160 -14.42318 -14.27457 -14.06747 -13.37885 -13.09605 -13.08095 -13.02591 -12.88527 -12.76427 -12.19601 -11.94681 -11.84735 -11.75342 -11.65726 -11.53981 -11.37305 -11.09517 -10.77346 -10.68874 -10.65430 -10.51246 -10.27498 -9.84256 -9.79243 -9.42790 -9.31647 -9.20695 -8.76315 -8.34563 -8.03378 -7.53209 -6.41852 -4.49999 1.08771 1.51874 2.90668 3.13528 3.22106 3.24775 3.26786 3.47868 3.62130 4.17080 4.18533 4.51408 4.60489 4.70592 4.71329 4.77980 4.87482 5.09617 5.34774 5.35588 5.41462 5.49639 5.62080 5.68550 5.71879 5.76232 5.79338 5.80824 5.83607 5.87487 5.94137 6.13882 6.18815 6.29358 6.36226 6.48671 6.55113 6.67601 6.71902 6.86018 6.98573 7.05488 7.20948 7.54167 7.62116 7.85359 8.07961 8.28717 8.50686 8.57895 9.19749 9.33993 10.65670 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.003602 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.939785 B = 7772.379987 C = 9180.404208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.172 3.828 3 C -0.223 4.223 4 C -0.039 4.039 5 C 0.566 3.434 6 O -0.556 6.556 7 N -0.599 5.599 8 C 0.109 3.891 9 C -0.119 4.119 10 C 0.248 3.752 11 O -0.584 6.584 12 C -0.535 4.535 13 H 0.068 0.932 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.902 3.098 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.080 3.920 21 C -0.190 4.190 22 C 0.395 3.605 23 N -0.699 5.699 24 C 0.091 3.909 25 C -0.199 4.199 26 C -0.189 4.189 27 N -0.534 5.534 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.184 0.816 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.386 0.614 37 H 0.272 0.728 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.139 0.861 41 H 0.404 0.596 42 H 0.133 0.867 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.997 -11.736 0.860 13.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.034 3.966 3 C -0.244 4.244 4 C -0.049 4.049 5 C 0.354 3.646 6 O -0.436 6.436 7 N -0.330 5.330 8 C -0.013 4.013 9 C -0.157 4.157 10 C 0.207 3.793 11 O -0.394 6.394 12 C -0.574 4.574 13 H 0.086 0.914 14 C -0.131 4.131 15 N -0.538 5.538 16 Si 0.730 3.270 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.042 4.042 21 C -0.215 4.215 22 C 0.161 3.839 23 N -0.331 5.331 24 C -0.016 4.016 25 C -0.238 4.238 26 C -0.227 4.227 27 N -0.253 5.253 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.200 0.800 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.238 0.762 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.157 0.843 41 H 0.240 0.760 42 H 0.151 0.849 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.769 -12.278 0.927 14.051 hybrid contribution -1.113 0.094 0.385 1.181 sum 5.656 -12.185 1.311 13.497 Atomic orbital electron populations 1.20755 0.88312 1.03866 1.03186 1.20920 0.96594 0.86812 0.92257 1.23624 0.94168 1.02491 1.04165 1.20036 0.93786 0.93141 0.97977 1.17877 0.86520 0.82715 0.77441 1.90688 1.13924 1.87170 1.51829 1.48605 1.09615 1.05731 1.69096 1.22263 0.96400 0.81832 1.00839 1.22794 0.94509 0.97927 1.00492 1.19527 0.91734 0.86658 0.81362 1.86116 1.49197 1.77404 1.26682 1.21557 0.91499 1.30434 1.13866 0.91382 1.25041 0.99202 0.93732 0.95075 1.69560 1.24064 1.33097 1.27081 0.86412 0.81563 0.78484 0.80579 1.20386 1.20855 1.19714 1.23610 0.76849 1.02281 1.01458 1.21386 1.01026 0.90423 1.08692 1.17986 0.88080 0.85633 0.92175 1.43634 1.03760 1.04731 1.81016 1.21560 0.80416 0.96260 1.03364 1.23518 1.03230 1.04644 0.92401 1.23374 1.02988 0.98222 0.98125 1.66728 1.07560 1.30888 1.20138 0.90438 0.90914 0.89395 0.79975 0.91359 0.91563 0.90451 0.90279 0.76205 0.91778 0.90377 0.90348 0.84292 0.76029 0.84945 0.88526 0.88010 0.87815 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 10.16 36.01 0.37 -1.09 16 2 C 0.17 2.86 6.77 -82.66 -0.56 2.30 16 3 C -0.22 -4.03 8.31 -39.02 -0.32 -4.36 16 4 C -0.04 -0.72 5.90 -104.68 -0.62 -1.34 16 5 C 0.57 11.58 7.83 -12.18 -0.10 11.49 16 6 O -0.56 -12.22 16.69 5.35 0.09 -12.13 16 7 N -0.60 -12.14 3.33 -171.90 -0.57 -12.71 16 8 C 0.11 2.07 6.92 -2.53 -0.02 2.05 16 9 C -0.12 -2.33 6.23 -24.58 -0.15 -2.48 16 10 C 0.25 5.54 0.86 -89.93 -0.08 5.47 16 11 O -0.58 -13.84 13.07 -35.23 -0.46 -14.30 16 12 C -0.54 -12.82 8.12 -34.44 -0.28 -13.10 16 13 H 0.07 1.63 7.76 -52.49 -0.41 1.22 16 14 C 0.07 1.70 5.28 -17.82 -0.09 1.60 16 15 N -0.90 -20.93 10.97 55.43 0.61 -20.32 16 16 Si 0.90 18.81 29.54 -169.99 -5.02 13.79 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 20 C 0.08 1.67 3.55 -3.06 -0.01 1.66 16 21 C -0.19 -3.19 8.90 -38.79 -0.35 -3.54 16 22 C 0.40 6.18 7.65 -155.06 -1.19 4.99 16 23 N -0.70 -8.52 5.75 -53.95 -0.31 -8.83 16 24 C 0.09 0.93 6.22 -67.93 -0.42 0.51 16 25 C -0.20 -1.66 10.46 -26.69 -0.28 -1.94 16 26 C -0.19 -1.45 10.45 -26.69 -0.28 -1.73 16 27 N -0.53 -8.80 10.28 -8.71 -0.09 -8.89 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 31 H 0.18 3.48 2.93 -53.00 -0.16 3.33 16 32 H 0.07 1.22 7.99 -51.92 -0.41 0.81 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.39 9.26 6.98 45.56 0.32 9.58 16 37 H 0.27 6.09 8.31 -40.82 -0.34 5.75 16 38 H 0.08 1.70 6.69 -51.93 -0.35 1.36 16 39 H 0.08 1.69 6.43 -51.93 -0.33 1.36 16 40 H 0.14 2.20 5.64 -52.49 -0.30 1.90 16 41 H 0.40 4.39 8.93 -40.82 -0.36 4.03 16 42 H 0.13 1.40 6.02 -51.93 -0.31 1.09 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -26.86 373.46 -10.17 -37.03 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -5.67 Total: 20.25 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -4.38 Total: 0.49 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.36 Total: -50.75 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.37 Total: -26.43 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -26.86 -10.17 -37.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469405154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.524 kcal (2) G-P(sol) polarization free energy of solvation -26.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds