Wall clock time and date at job start Tue Mar 31 2020 16:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37990 * 119.49994 * 2 1 4 4 C 1.39977 * 119.17397 * 179.77519 * 3 2 1 5 5 C 1.48164 * 120.88267 * 180.21834 * 4 3 2 6 6 O 1.21513 * 119.99981 * 173.26458 * 5 4 3 7 7 N 1.34777 * 120.00175 * 353.26109 * 5 4 3 8 8 C 1.47420 * 125.65121 * 185.66866 * 7 5 4 9 9 C 1.54907 * 104.83484 * 204.09603 * 8 7 5 10 10 C 1.55163 * 101.58203 * 322.99033 * 9 8 7 11 11 O 1.42898 * 110.72027 * 277.14458 * 10 9 8 12 12 C 1.50696 * 110.71854 * 154.04263 * 10 9 8 13 13 H 1.07995 * 120.00327 * 359.97438 * 12 10 9 14 14 C 1.37880 * 119.99646 * 180.02562 * 12 10 9 15 15 N 1.31517 * 119.99993 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99996 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46673 * 89.99975 * 16 14 12 18 18 H 1.48498 * 109.46988 * 210.00128 * 16 14 12 19 19 H 1.48501 * 109.46968 * 330.00325 * 16 14 12 20 20 C 1.47021 * 125.64521 * 5.36544 * 7 5 4 21 21 C 1.39542 * 118.23673 * 0.48197 * 4 3 2 22 22 C 1.39074 * 118.92916 * 359.75944 * 21 4 3 23 23 N 1.39032 * 119.64242 * 180.02562 * 22 21 4 24 24 C 1.46496 * 119.99917 * 359.53560 * 23 22 21 25 25 C 1.52999 * 117.50219 * 230.63989 * 24 23 22 26 26 C 1.53002 * 117.49672 * 161.97900 * 24 23 22 27 27 N 1.31891 * 119.50189 * 180.26760 * 2 1 3 28 28 H 1.08995 * 109.47248 * 269.72859 * 1 2 3 29 29 H 1.09006 * 109.46863 * 149.72926 * 1 2 3 30 30 H 1.08999 * 109.47179 * 29.72959 * 1 2 3 31 31 H 1.08002 * 120.41676 * 0.02562 * 3 2 1 32 32 H 1.09007 * 110.36905 * 322.93684 * 8 7 5 33 33 H 1.09000 * 110.36817 * 85.25662 * 8 7 5 34 34 H 1.08991 * 111.00479 * 81.06560 * 9 8 7 35 35 H 1.09004 * 111.00576 * 204.88089 * 9 8 7 36 36 H 0.96700 * 114.00130 * 180.02562 * 11 10 9 37 37 H 0.97006 * 119.99846 * 180.02562 * 15 14 12 38 38 H 1.08994 * 109.88180 * 298.39155 * 20 7 5 39 39 H 1.08998 * 109.88704 * 59.55845 * 20 7 5 40 40 H 1.07996 * 120.53381 * 179.73034 * 21 4 3 41 41 H 0.97002 * 120.00045 * 179.53888 * 23 22 21 42 42 H 1.09004 * 115.55286 * 16.31261 * 24 23 22 43 43 H 1.09003 * 117.49672 * 359.97438 * 25 24 23 44 44 H 1.09003 * 117.50232 * 145.02318 * 25 24 23 45 45 H 1.09004 * 117.49949 * 214.97759 * 26 24 23 46 46 H 1.09000 * 117.49993 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1865 1.2010 0.0000 4 6 3.5862 1.1930 0.0048 5 6 4.3539 2.4603 0.0098 6 8 5.5621 2.4382 0.1373 7 7 3.7122 3.6375 -0.1271 8 6 4.3563 4.9572 -0.2573 9 6 3.2898 5.9690 0.2311 10 6 1.9837 5.3312 -0.3119 11 8 1.7802 5.6841 -1.6816 12 6 0.8005 5.7450 0.5248 13 1 0.9406 6.4010 1.3711 14 6 -0.4607 5.2851 0.2103 15 7 -0.6310 4.4850 -0.8195 16 14 -1.9272 5.7973 1.2478 17 1 -2.5141 7.0438 0.6938 18 1 -2.9477 4.7186 1.2290 19 1 -1.4855 6.0366 2.6452 20 6 2.2539 3.8176 -0.1777 21 6 4.2394 -0.0400 -0.0009 22 6 3.4788 -1.2043 -0.0060 23 7 4.1142 -2.4409 -0.0112 24 6 5.5774 -2.5124 -0.0216 25 6 6.2336 -3.4060 -1.0760 26 6 6.2229 -3.8362 0.3930 27 7 2.1565 -1.1479 -0.0054 28 1 -0.3633 -0.0049 1.0276 29 1 -0.3633 -0.8876 -0.5181 30 1 -0.3633 0.8924 -0.5096 31 1 1.6451 2.1355 0.0004 32 1 5.2450 5.0093 0.3718 33 1 4.6154 5.1519 -1.2980 34 1 3.2741 6.0251 1.3194 35 1 3.4558 6.9534 -0.2065 36 1 0.9765 5.3108 -2.0687 37 1 -1.5184 4.1617 -1.0410 38 1 1.8447 3.2883 -1.0382 39 1 1.8019 3.4423 0.7403 40 1 5.3183 -0.0894 -0.0019 41 1 3.5888 -3.2562 -0.0080 42 1 6.0951 -1.5928 0.2515 43 1 5.5766 -3.9409 -1.7618 44 1 7.1831 -3.0745 -1.4964 45 1 7.1654 -3.7876 0.9384 46 1 5.5589 -4.6540 0.6730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001469405154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:05 Heat of formation + Delta-G solvation = -9.870658 kcal Electronic energy + Delta-G solvation = -28934.081885 eV Core-core repulsion = 25017.656179 eV Total energy + Delta-G solvation = -3916.425706 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95298 -40.65830 -39.01125 -38.73168 -36.11405 -35.14968 -34.18103 -34.02884 -31.94489 -31.32332 -29.80481 -28.07258 -27.25786 -25.73415 -24.25283 -23.47143 -23.25122 -22.07371 -21.32004 -20.65738 -19.21521 -18.71555 -18.32969 -17.64967 -17.23867 -16.78893 -16.61112 -16.42245 -15.94761 -15.72539 -15.56534 -15.36005 -14.83099 -14.79752 -14.70125 -14.37403 -13.93754 -13.85463 -13.66338 -13.42762 -13.38830 -13.05929 -12.85954 -12.71644 -12.56001 -12.40790 -12.32692 -12.27591 -12.19246 -12.03091 -11.46988 -11.40713 -11.11566 -11.02674 -10.65313 -10.53933 -10.48414 -10.09917 -9.67605 -8.65391 -8.20797 -6.35057 -0.31399 0.22327 1.47337 1.52553 1.59313 1.74483 1.81942 2.01589 2.44086 2.73388 3.01349 3.03847 3.27089 3.45644 3.74930 3.82436 3.91447 3.96456 4.01234 4.03612 4.09902 4.17071 4.24980 4.31251 4.52335 4.53479 4.56850 4.71217 4.76012 4.78177 4.79422 4.88065 4.97114 5.01108 5.07305 5.10238 5.15914 5.20769 5.26114 5.30114 5.47997 5.52502 5.80824 5.96997 6.06843 6.43233 6.49674 6.69217 6.94175 7.05982 7.35966 7.46779 8.85677 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.003602 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.939785 B = 7772.379987 C = 9180.404208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.171 3.829 3 C -0.239 4.239 4 C -0.054 4.054 5 C 0.563 3.437 6 O -0.575 6.575 7 N -0.602 5.602 8 C 0.109 3.891 9 C -0.113 4.113 10 C 0.233 3.767 11 O -0.592 6.592 12 C -0.558 4.558 13 H 0.062 0.938 14 C 0.041 3.959 15 N -0.905 5.905 16 Si 0.954 3.046 17 H -0.282 1.282 18 H -0.277 1.277 19 H -0.274 1.274 20 C 0.102 3.898 21 C -0.195 4.195 22 C 0.400 3.600 23 N -0.686 5.686 24 C 0.060 3.940 25 C -0.191 4.191 26 C -0.167 4.167 27 N -0.540 5.540 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.170 0.830 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.381 0.619 37 H 0.275 0.725 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.146 0.854 41 H 0.412 0.588 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.118 0.882 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.171 -13.382 1.295 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.034 3.966 3 C -0.261 4.261 4 C -0.065 4.065 5 C 0.353 3.647 6 O -0.457 6.457 7 N -0.333 5.333 8 C -0.012 4.012 9 C -0.151 4.151 10 C 0.193 3.807 11 O -0.401 6.401 12 C -0.596 4.596 13 H 0.080 0.920 14 C -0.161 4.161 15 N -0.545 5.545 16 Si 0.781 3.219 17 H -0.208 1.208 18 H -0.203 1.203 19 H -0.199 1.199 20 C -0.020 4.020 21 C -0.221 4.221 22 C 0.163 3.837 23 N -0.318 5.318 24 C -0.047 4.047 25 C -0.230 4.230 26 C -0.205 4.205 27 N -0.259 5.259 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.187 0.813 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.233 0.767 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.163 0.837 41 H 0.249 0.751 42 H 0.143 0.857 43 H 0.116 0.884 44 H 0.129 0.871 45 H 0.137 0.863 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.972 -13.956 1.357 15.660 hybrid contribution -1.109 0.516 0.227 1.244 sum 5.863 -13.440 1.584 14.749 Atomic orbital electron populations 1.20770 0.86568 1.04205 1.04062 1.21259 0.97785 0.86408 0.91174 1.23452 0.93951 1.02595 1.06098 1.20014 0.94070 0.92966 0.99409 1.18194 0.86447 0.83253 0.76819 1.90659 1.14657 1.87518 1.52855 1.48664 1.09377 1.06276 1.69020 1.22314 0.96598 0.81147 1.01169 1.22772 0.93146 0.98320 1.00835 1.19738 0.92646 0.87731 0.80613 1.86107 1.48916 1.77588 1.27514 1.21722 0.92540 1.31069 1.14269 0.91964 1.25573 1.00874 0.93723 0.95921 1.69611 1.24573 1.32919 1.27363 0.85610 0.79199 0.77951 0.79166 1.20780 1.20266 1.19906 1.23259 0.77162 1.01157 1.00454 1.21470 1.01448 0.90235 1.08941 1.18180 0.87917 0.86586 0.90970 1.43726 1.04779 1.03734 1.79567 1.21760 0.79181 0.97463 1.06279 1.23566 1.03211 1.03408 0.92805 1.23467 1.03150 0.96329 0.97558 1.66862 1.07843 1.30481 1.20749 0.89202 0.89401 0.90115 0.81329 0.90072 0.91488 0.89788 0.89394 0.76748 0.91486 0.91562 0.91222 0.83667 0.75105 0.85744 0.88358 0.87085 0.86339 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.69 10.16 71.24 0.72 -1.96 16 2 C 0.17 5.66 6.77 42.49 0.29 5.95 16 3 C -0.24 -8.80 8.31 22.63 0.19 -8.61 16 4 C -0.05 -2.05 5.90 -19.90 -0.12 -2.16 16 5 C 0.56 23.35 7.83 86.88 0.68 24.03 16 6 O -0.57 -25.42 16.69 -3.76 -0.06 -25.49 16 7 N -0.60 -24.71 3.33 -816.08 -2.71 -27.42 16 8 C 0.11 4.14 6.92 86.86 0.60 4.74 16 9 C -0.11 -4.39 6.23 31.99 0.20 -4.19 16 10 C 0.23 10.52 0.86 -10.35 -0.01 10.51 16 11 O -0.59 -28.36 13.07 -148.98 -1.95 -30.31 16 12 C -0.56 -26.86 8.12 25.60 0.21 -26.65 16 13 H 0.06 3.00 7.76 -2.91 -0.02 2.97 16 14 C 0.04 1.92 5.28 84.66 0.45 2.37 16 15 N -0.91 -42.29 10.97 21.45 0.24 -42.05 16 16 Si 0.95 38.29 29.54 68.60 2.03 40.32 16 17 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 C 0.10 4.35 3.55 86.73 0.31 4.66 16 21 C -0.20 -6.54 8.90 22.79 0.20 -6.34 16 22 C 0.40 12.13 7.65 133.05 1.02 13.15 16 23 N -0.69 -15.62 5.75 -324.61 -1.87 -17.48 16 24 C 0.06 1.10 6.22 44.99 0.28 1.38 16 25 C -0.19 -2.73 10.46 30.62 0.32 -2.41 16 26 C -0.17 -2.09 10.45 30.62 0.32 -1.77 16 27 N -0.54 -17.26 10.28 -181.47 -1.86 -19.12 16 28 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 31 H 0.17 6.65 2.93 -3.40 -0.01 6.64 16 32 H 0.08 2.85 7.99 -2.38 -0.02 2.83 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.08 3.12 8.03 -2.39 -0.02 3.10 16 35 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 36 H 0.38 18.64 6.98 -74.06 -0.52 18.13 16 37 H 0.28 12.24 8.31 -92.70 -0.77 11.47 16 38 H 0.07 2.99 6.69 -2.39 -0.02 2.97 16 39 H 0.07 3.10 6.43 -2.39 -0.02 3.08 16 40 H 0.15 4.59 5.64 -2.91 -0.02 4.57 16 41 H 0.41 8.10 8.93 -92.71 -0.83 7.27 16 42 H 0.12 2.52 6.02 -2.39 -0.01 2.50 16 43 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -56.28 373.46 -0.84 -57.12 By element: Atomic # 1 Polarization: 52.04 SS G_CDS: -0.30 Total: 51.74 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 5.66 Total: 12.70 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -6.21 Total: -106.08 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -2.01 Total: -55.80 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -56.28 -0.84 -57.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469405154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.246 kcal (2) G-P(sol) polarization free energy of solvation -56.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds