Wall clock time and date at job start Tue Mar 31 2020 16:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35734 * 120.33096 * 2 1 4 4 C 1.40825 * 119.72278 * 180.02562 * 3 2 1 5 5 C 1.34542 * 120.57973 * 0.02562 * 4 3 2 6 6 N 1.37437 * 120.74164 * 359.95411 * 5 4 3 7 7 C 1.35134 * 131.28247 * 180.02562 * 6 5 4 8 8 C 1.38061 * 108.76794 * 180.02562 * 7 6 5 9 9 C 1.47496 * 126.37065 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00123 * 19.60927 * 9 8 7 11 11 N 1.34777 * 120.00227 * 199.60284 * 9 8 7 12 12 C 1.46502 * 119.99781 * 357.85691 * 11 9 8 13 13 C 1.46498 * 120.00238 * 177.85633 * 11 9 8 14 14 C 1.52999 * 109.46877 * 90.00073 * 13 11 9 15 15 H 1.09005 * 109.47510 * 60.00354 * 14 13 11 16 16 O 1.42899 * 109.47113 * 299.99743 * 14 13 11 17 17 C 1.53007 * 109.46681 * 179.97438 * 14 13 11 18 18 N 1.46504 * 109.46878 * 184.99732 * 17 14 13 19 19 C 1.36936 * 119.99920 * 179.72593 * 18 17 14 20 20 H 1.08004 * 119.99840 * 0.27430 * 19 18 17 21 21 C 1.38814 * 119.99802 * 180.27640 * 19 18 17 22 22 N 1.31621 * 119.99817 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00337 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47221 * 89.99694 * 23 21 19 25 25 H 1.48499 * 109.46952 * 210.00042 * 23 21 19 26 26 H 1.48501 * 109.46653 * 329.99405 * 23 21 19 27 27 C 1.41195 * 107.25659 * 0.26221 * 8 7 6 28 28 C 1.37949 * 119.81334 * 0.04498 * 6 5 4 29 29 H 1.09004 * 109.47049 * 269.97932 * 1 2 3 30 30 H 1.09003 * 109.47241 * 29.97353 * 1 2 3 31 31 H 1.08999 * 109.47275 * 149.98022 * 1 2 3 32 32 H 1.07995 * 120.14464 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.71395 * 180.02562 * 4 3 2 34 34 H 1.07997 * 119.63374 * 180.02562 * 5 4 3 35 35 H 1.08001 * 125.61667 * 0.02562 * 7 6 5 36 36 H 1.09006 * 109.47321 * 276.09785 * 12 11 9 37 37 H 1.09005 * 109.47102 * 36.09179 * 12 11 9 38 38 H 1.08999 * 109.47318 * 156.09630 * 12 11 9 39 39 H 1.09002 * 109.47229 * 330.00179 * 13 11 9 40 40 H 1.08995 * 109.47057 * 209.99843 * 13 11 9 41 41 H 0.96697 * 114.00255 * 300.00043 * 16 14 13 42 42 H 1.08996 * 109.46731 * 65.00252 * 17 14 13 43 43 H 1.08995 * 109.47276 * 304.99892 * 17 14 13 44 44 H 0.97000 * 119.99989 * 0.02562 * 18 17 14 45 45 H 0.96996 * 120.00037 * 179.97438 * 22 21 19 46 46 H 1.08001 * 126.56922 * 179.71291 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1566 -0.0005 5 6 4.2728 -0.0089 -0.0016 6 7 3.6005 -1.2076 -0.0012 7 6 4.0500 -2.4820 -0.0016 8 6 2.9650 -3.3357 -0.0015 9 6 3.0121 -4.8099 -0.0023 10 8 4.0231 -5.3862 0.3502 11 7 1.9344 -5.5184 -0.3937 12 6 0.7008 -4.8254 -0.7735 13 6 1.9966 -6.9813 -0.4394 14 6 1.5625 -7.5526 0.9119 15 1 0.5411 -7.2390 1.1279 16 8 2.4354 -7.0705 1.9355 17 6 1.6268 -9.0806 0.8639 18 7 1.0987 -9.6311 2.1147 19 6 1.0508 -10.9871 2.2996 20 1 1.4063 -11.6506 1.5252 21 6 0.5451 -11.5087 3.4824 22 7 0.4985 -12.8121 3.6600 23 14 -0.0706 -10.3611 4.8216 24 1 -1.5156 -10.0888 4.6144 25 1 0.1279 -10.9975 6.1486 26 1 0.6866 -9.0849 4.7664 27 6 1.8021 -2.5351 -0.0072 28 6 2.2211 -1.2203 -0.0007 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6603 2.1113 0.0004 33 1 4.1459 2.0888 -0.0001 34 1 5.3527 -0.0025 -0.0016 35 1 5.0872 -2.7830 -0.0019 36 1 0.1196 -4.6014 0.1212 37 1 0.9491 -3.8967 -1.2873 38 1 0.1156 -5.4624 -1.4368 39 1 3.0179 -7.2950 -0.6553 40 1 1.3308 -7.3491 -1.2201 41 1 3.3627 -7.3129 1.8079 42 1 2.6621 -9.3968 0.7363 43 1 1.0303 -9.4433 0.0269 44 1 0.7791 -9.0351 2.8101 45 1 0.1455 -13.1766 4.4866 46 1 0.7802 -2.8847 -0.0129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486309491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:28 Heat of formation + Delta-G solvation = 20.865864 kcal Electronic energy + Delta-G solvation = -27884.056270 eV Core-core repulsion = 23968.963400 eV Total energy + Delta-G solvation = -3915.092871 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.59285 -39.80783 -37.44875 -36.79530 -35.39845 -34.44409 -34.04759 -31.48880 -30.98922 -29.51480 -28.86011 -27.48373 -26.91319 -25.82248 -23.56700 -22.49332 -21.99999 -21.41378 -21.12204 -19.34499 -17.82235 -17.63934 -16.94666 -16.80573 -16.23165 -16.09044 -15.64697 -15.36771 -14.99917 -14.79445 -14.57585 -14.40075 -14.00383 -13.71607 -13.57992 -13.43857 -13.20538 -13.18236 -13.03047 -12.61388 -12.36875 -12.20631 -12.12756 -12.04481 -11.70929 -11.53773 -11.34474 -11.16926 -10.80414 -10.72992 -10.46265 -10.10741 -9.95207 -9.65683 -9.50674 -8.85788 -8.84785 -8.46704 -7.67302 -7.17098 -5.71385 -3.06302 0.38381 1.02011 1.93563 2.29673 3.02782 3.08312 3.40144 3.45075 3.52246 3.54228 4.10321 4.25630 4.42026 4.48328 4.56648 4.66889 4.78660 4.84979 4.93660 4.99715 5.04191 5.07178 5.15346 5.18447 5.28166 5.38282 5.39455 5.51048 5.54554 5.56205 5.58840 5.65511 5.70611 5.72563 5.90069 5.95385 5.98276 6.02974 6.35661 6.48123 6.51314 6.56751 6.71907 6.91227 7.38703 8.03576 8.17744 8.27786 8.47768 9.27914 10.00486 10.21097 11.46869 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.021234 B = 0.002346 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.315112 B =11934.774979 C =12286.032536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.040 4.040 3 C -0.143 4.143 4 C -0.131 4.131 5 C 0.035 3.965 6 N -0.340 5.340 7 C 0.017 3.983 8 C -0.162 4.162 9 C 0.592 3.408 10 O -0.537 6.537 11 N -0.602 5.602 12 C 0.066 3.934 13 C 0.087 3.913 14 C 0.082 3.918 15 H 0.094 0.906 16 O -0.551 6.551 17 C 0.130 3.870 18 N -0.750 5.750 19 C -0.244 4.244 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.935 5.935 23 Si 0.883 3.117 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.272 1.272 27 C -0.173 4.173 28 C 0.028 3.972 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.180 0.820 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.377 0.623 42 H 0.030 0.970 43 H 0.033 0.967 44 H 0.365 0.635 45 H 0.259 0.741 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 33.321 -13.471 36.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.041 4.041 3 C -0.163 4.163 4 C -0.151 4.151 5 C -0.083 4.083 6 N -0.003 5.003 7 C -0.117 4.117 8 C -0.170 4.170 9 C 0.382 3.618 10 O -0.415 6.415 11 N -0.334 5.334 12 C -0.077 4.077 13 C -0.036 4.036 14 C 0.021 3.979 15 H 0.112 0.888 16 O -0.356 6.356 17 C 0.002 3.998 18 N -0.395 5.395 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.713 3.287 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.198 1.198 27 C -0.196 4.196 28 C -0.076 4.076 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.150 0.850 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.198 0.802 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.225 0.775 42 H 0.047 0.953 43 H 0.051 0.949 44 H 0.199 0.801 45 H 0.069 0.931 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.098 33.164 -13.106 35.794 hybrid contribution 0.044 0.465 0.823 0.947 sum 3.142 33.629 -12.283 35.939 Atomic orbital electron populations 1.20743 0.89553 1.03412 1.03079 1.19388 0.96500 0.90148 0.98112 1.20814 0.93677 0.97917 1.03913 1.20693 0.94840 0.97036 1.02528 1.21658 0.98451 0.83142 1.05065 1.41305 1.07249 1.05389 1.46371 1.21978 0.99766 0.79808 1.10155 1.19522 0.93213 0.92934 1.11292 1.17294 0.82682 0.85342 0.76529 1.90737 1.31779 1.71492 1.47503 1.47425 1.12745 1.06499 1.66690 1.22367 0.86380 0.98609 1.00361 1.22266 1.03889 0.78768 0.98709 1.22541 0.94707 0.93763 0.86880 0.88789 1.86516 1.21750 1.78792 1.48568 1.21228 0.97679 0.90482 0.90457 1.42595 1.76717 1.04536 1.15698 1.19060 1.35063 0.81423 1.01831 0.89308 1.24663 1.01260 0.95491 0.97768 1.69708 1.52075 1.09833 1.26713 0.86540 0.78905 0.80924 0.82320 1.21170 1.21784 1.19778 1.21788 0.99095 0.89420 1.09343 1.18700 0.81822 0.95058 1.11999 0.90362 0.90859 0.90830 0.84960 0.83721 0.82150 0.80249 0.92310 0.89765 0.90980 0.89312 0.89430 0.77530 0.95250 0.94893 0.80134 0.93111 0.81898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 9.91 36.01 0.36 -0.22 16 2 C -0.04 -0.31 5.90 -104.32 -0.62 -0.93 16 3 C -0.14 -0.91 9.72 -39.50 -0.38 -1.30 16 4 C -0.13 -0.76 9.97 -39.91 -0.40 -1.16 16 5 C 0.03 0.24 10.89 -16.35 -0.18 0.07 16 6 N -0.34 -3.33 2.92 -60.42 -0.18 -3.50 16 7 C 0.02 0.18 11.43 -16.16 -0.18 0.00 16 8 C -0.16 -2.01 5.81 -105.07 -0.61 -2.62 16 9 C 0.59 8.56 7.19 -12.49 -0.09 8.47 16 10 O -0.54 -9.30 15.20 -5.89 -0.09 -9.39 16 11 N -0.60 -7.50 2.83 -182.82 -0.52 -8.02 16 12 C 0.07 0.58 8.82 59.85 0.53 1.11 16 13 C 0.09 1.14 5.18 -4.04 -0.02 1.11 16 14 C 0.08 1.35 3.27 -26.73 -0.09 1.26 16 15 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 16 O -0.55 -10.37 12.05 -46.40 -0.56 -10.93 16 17 C 0.13 2.56 5.90 -4.04 -0.02 2.54 16 18 N -0.75 -18.80 5.35 -59.90 -0.32 -19.12 16 19 C -0.24 -7.18 10.47 -15.06 -0.16 -7.34 16 20 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 22 N -0.94 -30.22 13.97 55.49 0.78 -29.45 16 23 Si 0.88 23.24 27.74 -169.99 -4.71 18.52 16 24 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 26 H -0.27 -6.99 6.52 56.52 0.37 -6.62 16 27 C -0.17 -1.78 8.15 -38.55 -0.31 -2.10 16 28 C 0.03 0.28 6.60 -84.00 -0.55 -0.27 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.07 0.35 7.69 -51.93 -0.40 -0.05 16 32 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 34 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.06 0.50 7.40 -51.93 -0.38 0.12 16 37 H 0.08 0.65 5.21 -51.93 -0.27 0.38 16 38 H 0.07 0.51 7.83 -51.93 -0.41 0.10 16 39 H 0.09 1.22 7.45 -51.93 -0.39 0.84 16 40 H 0.09 0.93 7.85 -51.93 -0.41 0.52 16 41 H 0.38 6.71 8.38 45.56 0.38 7.10 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.37 9.24 5.53 -40.82 -0.23 9.02 16 45 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 46 H 0.16 1.35 4.88 -52.49 -0.26 1.09 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -37.95 376.97 -8.50 -46.45 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.75 Total: 11.12 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.83 Total: -1.36 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.24 Total: -60.09 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.65 Total: -20.33 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.71 Total: 18.52 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.95 -8.50 -46.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486309491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.311 kcal (2) G-P(sol) polarization free energy of solvation -37.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds