Wall clock time and date at job start Tue Mar 31 2020 16:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35734 * 120.33096 * 2 1 4 4 C 1.40825 * 119.72278 * 180.02562 * 3 2 1 5 5 C 1.34542 * 120.57973 * 0.02562 * 4 3 2 6 6 N 1.37437 * 120.74164 * 359.95411 * 5 4 3 7 7 C 1.35134 * 131.28247 * 180.02562 * 6 5 4 8 8 C 1.38061 * 108.76794 * 180.02562 * 7 6 5 9 9 C 1.47496 * 126.37065 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00123 * 19.60927 * 9 8 7 11 11 N 1.34777 * 120.00227 * 199.60284 * 9 8 7 12 12 C 1.46502 * 119.99781 * 357.85691 * 11 9 8 13 13 C 1.46498 * 120.00238 * 177.85633 * 11 9 8 14 14 C 1.52999 * 109.46877 * 90.00073 * 13 11 9 15 15 H 1.09005 * 109.47510 * 60.00354 * 14 13 11 16 16 O 1.42899 * 109.47113 * 299.99743 * 14 13 11 17 17 C 1.53007 * 109.46681 * 179.97438 * 14 13 11 18 18 N 1.46504 * 109.46878 * 184.99732 * 17 14 13 19 19 C 1.36936 * 119.99920 * 179.72593 * 18 17 14 20 20 H 1.08004 * 119.99840 * 0.27430 * 19 18 17 21 21 C 1.38814 * 119.99802 * 180.27640 * 19 18 17 22 22 N 1.31621 * 119.99817 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00337 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47221 * 89.99694 * 23 21 19 25 25 H 1.48499 * 109.46952 * 210.00042 * 23 21 19 26 26 H 1.48501 * 109.46653 * 329.99405 * 23 21 19 27 27 C 1.41195 * 107.25659 * 0.26221 * 8 7 6 28 28 C 1.37949 * 119.81334 * 0.04498 * 6 5 4 29 29 H 1.09004 * 109.47049 * 269.97932 * 1 2 3 30 30 H 1.09003 * 109.47241 * 29.97353 * 1 2 3 31 31 H 1.08999 * 109.47275 * 149.98022 * 1 2 3 32 32 H 1.07995 * 120.14464 * 0.02562 * 3 2 1 33 33 H 1.07996 * 119.71395 * 180.02562 * 4 3 2 34 34 H 1.07997 * 119.63374 * 180.02562 * 5 4 3 35 35 H 1.08001 * 125.61667 * 0.02562 * 7 6 5 36 36 H 1.09006 * 109.47321 * 276.09785 * 12 11 9 37 37 H 1.09005 * 109.47102 * 36.09179 * 12 11 9 38 38 H 1.08999 * 109.47318 * 156.09630 * 12 11 9 39 39 H 1.09002 * 109.47229 * 330.00179 * 13 11 9 40 40 H 1.08995 * 109.47057 * 209.99843 * 13 11 9 41 41 H 0.96697 * 114.00255 * 300.00043 * 16 14 13 42 42 H 1.08996 * 109.46731 * 65.00252 * 17 14 13 43 43 H 1.08995 * 109.47276 * 304.99892 * 17 14 13 44 44 H 0.97000 * 119.99989 * 0.02562 * 18 17 14 45 45 H 0.96996 * 120.00037 * 179.97438 * 22 21 19 46 46 H 1.08001 * 126.56922 * 179.71291 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1566 -0.0005 5 6 4.2728 -0.0089 -0.0016 6 7 3.6005 -1.2076 -0.0012 7 6 4.0500 -2.4820 -0.0016 8 6 2.9650 -3.3357 -0.0015 9 6 3.0121 -4.8099 -0.0023 10 8 4.0231 -5.3862 0.3502 11 7 1.9344 -5.5184 -0.3937 12 6 0.7008 -4.8254 -0.7735 13 6 1.9966 -6.9813 -0.4394 14 6 1.5625 -7.5526 0.9119 15 1 0.5411 -7.2390 1.1279 16 8 2.4354 -7.0705 1.9355 17 6 1.6268 -9.0806 0.8639 18 7 1.0987 -9.6311 2.1147 19 6 1.0508 -10.9871 2.2996 20 1 1.4063 -11.6506 1.5252 21 6 0.5451 -11.5087 3.4824 22 7 0.4985 -12.8121 3.6600 23 14 -0.0706 -10.3611 4.8216 24 1 -1.5156 -10.0888 4.6144 25 1 0.1279 -10.9975 6.1486 26 1 0.6866 -9.0849 4.7664 27 6 1.8021 -2.5351 -0.0072 28 6 2.2211 -1.2203 -0.0007 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6603 2.1113 0.0004 33 1 4.1459 2.0888 -0.0001 34 1 5.3527 -0.0025 -0.0016 35 1 5.0872 -2.7830 -0.0019 36 1 0.1196 -4.6014 0.1212 37 1 0.9491 -3.8967 -1.2873 38 1 0.1156 -5.4624 -1.4368 39 1 3.0179 -7.2950 -0.6553 40 1 1.3308 -7.3491 -1.2201 41 1 3.3627 -7.3129 1.8079 42 1 2.6621 -9.3968 0.7363 43 1 1.0303 -9.4433 0.0269 44 1 0.7791 -9.0351 2.8101 45 1 0.1455 -13.1766 4.4866 46 1 0.7802 -2.8847 -0.0129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486309491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:27 Heat of formation + Delta-G solvation = -5.281301 kcal Electronic energy + Delta-G solvation = -27885.190096 eV Core-core repulsion = 23968.963400 eV Total energy + Delta-G solvation = -3916.226697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.25804 -40.83602 -38.73508 -37.51373 -36.51109 -35.96339 -35.01268 -33.49250 -31.94393 -30.73872 -29.51372 -28.33995 -27.59774 -27.13263 -24.85111 -23.57524 -22.96927 -22.64981 -22.09637 -20.24009 -19.80649 -18.50153 -17.91320 -17.65972 -17.22581 -16.95819 -16.67937 -16.47841 -16.26292 -16.01388 -15.83021 -15.30512 -15.16161 -14.94706 -14.67595 -14.31207 -14.16845 -14.09021 -14.00868 -13.85148 -13.69100 -13.30011 -13.19475 -12.86204 -12.74839 -12.60211 -12.50683 -12.28516 -12.21061 -11.98523 -11.93343 -11.86272 -11.21582 -11.05433 -11.01311 -10.86929 -9.68540 -9.43962 -9.32374 -8.28959 -8.05276 -5.38038 -0.18198 0.38013 1.12018 1.36300 1.39500 1.48127 1.63886 2.12605 2.43225 2.46506 2.54486 3.24756 3.40202 3.57250 3.64160 3.68784 3.83706 3.97022 4.02460 4.09705 4.15359 4.18556 4.25165 4.38230 4.39883 4.50981 4.56696 4.68378 4.75462 4.76101 4.82605 4.84002 4.89397 4.91082 4.95875 5.15998 5.21927 5.25097 5.37580 5.47946 5.51092 5.71455 5.72727 5.91318 6.18857 6.28001 6.42606 6.77346 7.05417 7.24021 7.82235 8.00740 9.16037 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.021234 B = 0.002346 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.315112 B =11934.774979 C =12286.032536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.061 4.061 3 C -0.139 4.139 4 C -0.123 4.123 5 C 0.011 3.989 6 N -0.342 5.342 7 C -0.002 4.002 8 C -0.187 4.187 9 C 0.584 3.416 10 O -0.579 6.579 11 N -0.600 5.600 12 C 0.060 3.940 13 C 0.095 3.905 14 C 0.092 3.908 15 H 0.099 0.901 16 O -0.568 6.568 17 C 0.126 3.874 18 N -0.755 5.755 19 C -0.235 4.235 20 H 0.060 0.940 21 C -0.063 4.063 22 N -0.981 5.981 23 Si 0.955 3.045 24 H -0.273 1.273 25 H -0.294 1.294 26 H -0.263 1.263 27 C -0.182 4.182 28 C 0.019 3.981 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.160 0.840 33 H 0.179 0.821 34 H 0.184 0.816 35 H 0.183 0.817 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.378 0.622 42 H 0.025 0.975 43 H 0.049 0.951 44 H 0.366 0.634 45 H 0.259 0.741 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 37.231 -14.108 39.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.062 4.062 3 C -0.159 4.159 4 C -0.143 4.143 5 C -0.106 4.106 6 N -0.004 5.004 7 C -0.136 4.136 8 C -0.195 4.195 9 C 0.375 3.625 10 O -0.461 6.461 11 N -0.331 5.331 12 C -0.082 4.082 13 C -0.029 4.029 14 C 0.032 3.968 15 H 0.117 0.883 16 O -0.374 6.374 17 C -0.001 4.001 18 N -0.400 5.400 19 C -0.366 4.366 20 H 0.078 0.922 21 C -0.254 4.254 22 N -0.632 5.632 23 Si 0.782 3.218 24 H -0.199 1.199 25 H -0.221 1.221 26 H -0.188 1.188 27 C -0.205 4.205 28 C -0.086 4.086 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.177 0.823 33 H 0.196 0.804 34 H 0.201 0.799 35 H 0.200 0.800 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.138 0.862 41 H 0.226 0.774 42 H 0.043 0.957 43 H 0.067 0.933 44 H 0.199 0.801 45 H 0.067 0.933 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.876 37.130 -13.793 39.653 hybrid contribution 0.468 -0.611 0.919 1.199 sum 2.344 36.519 -12.874 38.793 Atomic orbital electron populations 1.20796 0.87971 1.04435 1.03458 1.19736 0.97814 0.89710 0.98951 1.21285 0.94202 0.98596 1.01809 1.21203 0.94982 0.97857 1.00238 1.22276 0.99936 0.82614 1.05789 1.41479 1.07537 1.05688 1.45742 1.22050 0.99850 0.80559 1.11122 1.19481 0.94658 0.91990 1.13365 1.17728 0.82557 0.86352 0.75913 1.90697 1.33373 1.72407 1.49580 1.47513 1.13509 1.06161 1.65877 1.22604 0.85037 0.99390 1.01137 1.22128 1.04022 0.79406 0.97346 1.22504 0.94649 0.91326 0.88349 0.88342 1.86486 1.22113 1.78973 1.49865 1.21445 0.97172 0.92862 0.88615 1.42635 1.76980 1.02861 1.17572 1.19073 1.33457 0.83149 1.00893 0.92191 1.25475 1.02415 0.97067 1.00480 1.69874 1.53890 1.11917 1.27526 0.85404 0.78802 0.78853 0.78713 1.19871 1.22080 1.18782 1.21938 0.99221 0.89473 1.09868 1.19125 0.82196 0.95829 1.11480 0.90206 0.89045 0.90678 0.82256 0.80377 0.79865 0.79951 0.91864 0.88647 0.88709 0.90336 0.86212 0.77382 0.95672 0.93308 0.80124 0.93261 0.80400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 9.91 71.24 0.71 -0.17 16 2 C -0.06 -0.81 5.90 -19.67 -0.12 -0.93 16 3 C -0.14 -1.32 9.72 22.32 0.22 -1.10 16 4 C -0.12 -1.03 9.97 22.06 0.22 -0.81 16 5 C 0.01 0.13 10.89 82.97 0.90 1.04 16 6 N -0.34 -6.44 2.92 -345.06 -1.01 -7.45 16 7 C 0.00 -0.04 11.43 84.14 0.96 0.93 16 8 C -0.19 -4.69 5.81 -20.15 -0.12 -4.81 16 9 C 0.58 17.11 7.19 86.68 0.62 17.73 16 10 O -0.58 -20.85 15.20 6.67 0.10 -20.75 16 11 N -0.60 -14.38 2.83 -850.58 -2.40 -16.78 16 12 C 0.06 0.93 8.82 127.77 1.13 2.05 16 13 C 0.09 2.35 5.18 86.38 0.45 2.80 16 14 C 0.09 2.93 3.27 30.60 0.10 3.03 16 15 H 0.10 3.07 8.14 -2.38 -0.02 3.06 16 16 O -0.57 -21.31 12.05 -138.30 -1.67 -22.98 16 17 C 0.13 4.88 5.90 86.38 0.51 5.39 16 18 N -0.75 -37.46 5.35 -343.44 -1.84 -39.30 16 19 C -0.23 -13.98 10.47 84.03 0.88 -13.10 16 20 H 0.06 3.85 8.06 -2.91 -0.02 3.82 16 21 C -0.06 -3.85 5.50 84.86 0.47 -3.39 16 22 N -0.98 -64.66 13.97 21.65 0.30 -64.36 16 23 Si 0.95 48.28 27.74 68.60 1.90 50.18 16 24 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 26 H -0.26 -12.73 6.52 99.48 0.65 -12.08 16 27 C -0.18 -3.64 8.15 22.94 0.19 -3.45 16 28 C 0.02 0.35 6.60 38.90 0.26 0.61 16 29 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.09 0.37 8.09 -2.39 -0.02 0.35 16 31 H 0.07 0.56 7.69 -2.39 -0.02 0.54 16 32 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 33 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.18 3.71 8.06 -2.91 -0.02 3.68 16 36 H 0.06 0.95 7.40 -2.38 -0.02 0.93 16 37 H 0.10 1.30 5.21 -2.38 -0.01 1.29 16 38 H 0.09 1.04 7.83 -2.39 -0.02 1.02 16 39 H 0.08 2.14 7.45 -2.39 -0.02 2.13 16 40 H 0.12 2.20 7.85 -2.39 -0.02 2.18 16 41 H 0.38 13.78 8.38 -74.06 -0.62 13.16 16 42 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.37 18.02 5.53 -92.71 -0.51 17.51 16 45 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 46 H 0.18 2.72 4.88 -2.91 -0.01 2.70 16 Total: -1.00 -83.90 376.97 2.59 -81.31 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -0.17 Total: 34.29 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 7.37 Total: 5.83 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -4.95 Total: -127.88 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -1.56 Total: -43.73 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.90 Total: 50.18 kcal Total: -83.90 2.59 -81.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486309491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.030 kcal (2) G-P(sol) polarization free energy of solvation -83.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds