Wall clock time and date at job start Tue Mar 31 2020 17:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 110.78201 * 2 1 4 4 N 1.46500 * 109.47204 * 298.21891 * 3 2 1 5 5 C 1.36934 * 119.99944 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00572 * 359.97438 * 5 4 3 7 7 C 1.38815 * 119.99865 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00043 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00006 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47283 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47097 * 119.99791 * 9 7 5 12 12 H 1.48504 * 109.47245 * 239.99696 * 9 7 5 13 13 C 1.55436 * 110.71013 * 123.21473 * 2 1 3 14 14 C 1.54912 * 101.45214 * 82.88791 * 13 2 1 15 15 N 1.47425 * 104.92689 * 37.00616 * 14 13 2 16 16 C 1.34777 * 125.64952 * 155.79622 * 15 14 13 17 17 O 1.21532 * 119.99865 * 354.34840 * 16 15 14 18 18 C 1.48029 * 120.00117 * 174.34926 * 16 15 14 19 19 C 1.39556 * 120.00106 * 7.05120 * 18 16 15 20 20 C 1.37822 * 120.00141 * 179.76472 * 19 18 16 21 21 C 1.39556 * 119.99998 * 0.50965 * 20 19 18 22 22 C 1.48029 * 120.00172 * 179.76473 * 21 20 19 23 23 N 1.34775 * 120.00074 * 359.97438 * 22 21 20 24 24 O 1.21526 * 120.00105 * 179.97438 * 22 21 20 25 25 C 1.39558 * 119.99676 * 359.74237 * 21 20 19 26 26 C 1.37819 * 120.00192 * 0.02562 * 25 21 20 27 27 C 1.47026 * 108.70128 * 335.81902 * 15 14 13 28 28 H 1.08993 * 109.47062 * 181.78452 * 1 2 3 29 29 H 1.08996 * 109.47013 * 301.78602 * 1 2 3 30 30 H 1.09004 * 109.47007 * 61.78156 * 1 2 3 31 31 H 1.09002 * 109.47126 * 58.21651 * 3 2 1 32 32 H 1.08998 * 109.47137 * 178.21480 * 3 2 1 33 33 H 0.97002 * 120.00143 * 359.97438 * 4 3 2 34 34 H 0.96998 * 119.99798 * 179.97438 * 8 7 5 35 35 H 1.09000 * 111.11932 * 324.83796 * 13 2 1 36 36 H 1.08997 * 111.02017 * 200.89511 * 13 2 1 37 37 H 1.08995 * 110.36755 * 278.11525 * 14 13 2 38 38 H 1.08996 * 110.37001 * 155.90062 * 14 13 2 39 39 H 1.08000 * 120.00021 * 359.97438 * 19 18 16 40 40 H 1.07998 * 119.99718 * 180.25008 * 20 19 18 41 41 H 0.97003 * 119.99870 * 0.02562 * 23 22 21 42 42 H 0.96995 * 120.00157 * 180.02562 * 23 22 21 43 43 H 1.08007 * 120.00006 * 179.97438 * 25 21 20 44 44 H 1.08000 * 119.99898 * 180.02562 * 26 25 21 45 45 H 1.09000 * 109.87868 * 120.48060 * 27 15 14 46 46 H 1.09000 * 109.87654 * 241.48760 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 7 1.6355 2.1188 -1.2171 5 6 2.0022 3.4196 -1.4373 6 1 2.6134 3.9384 -0.7136 7 6 1.5882 4.0717 -2.5907 8 7 0.8438 3.4394 -3.4730 9 14 2.0890 5.8460 -2.8915 10 1 2.9199 6.3248 -1.7577 11 1 2.8715 5.9328 -4.1506 12 1 0.8731 6.6910 -3.0050 13 6 2.0797 -0.7964 1.2164 14 6 2.0126 -2.2509 0.6874 15 7 2.3716 -2.1531 -0.7391 16 6 2.8859 -3.1474 -1.4896 17 8 3.1865 -4.2056 -0.9730 18 6 3.0848 -2.9506 -2.9432 19 6 2.8799 -1.6926 -3.5116 20 6 3.0698 -1.5082 -4.8641 21 6 3.4567 -2.5819 -5.6672 22 6 3.6556 -2.3851 -7.1208 23 7 3.4625 -1.1691 -7.6688 24 8 3.9930 -3.3200 -7.8200 25 6 3.6566 -3.8412 -5.0997 26 6 3.4713 -4.0244 -3.7464 27 6 2.0760 -0.7911 -1.2073 28 1 -0.3633 -1.0271 0.0320 29 1 -0.3633 0.5413 0.8735 30 1 -0.3633 0.4859 -0.9056 31 1 1.6957 1.9622 0.8736 32 1 3.1621 1.4057 0.0320 33 1 1.0862 1.6531 -1.8669 34 1 0.5542 3.8951 -4.2788 35 1 1.4410 -0.6688 2.0904 36 1 3.1070 -0.5090 1.4399 37 1 1.0039 -2.6488 0.7983 38 1 2.7282 -2.8803 1.2164 39 1 2.5757 -0.8627 -2.8909 40 1 2.9150 -0.5337 -5.3032 41 1 3.1936 -0.4227 -7.1106 42 1 3.5925 -1.0402 -8.6213 43 1 3.9556 -4.6723 -5.7212 44 1 3.6264 -4.9988 -3.3072 45 1 2.9868 -0.3206 -1.5776 46 1 1.3282 -0.8256 -1.9996 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500401715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:51 Heat of formation + Delta-G solvation = -13.392076 kcal Electronic energy + Delta-G solvation = -28629.492692 eV Core-core repulsion = 24712.914286 eV Total energy + Delta-G solvation = -3916.578406 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.85193 -39.89551 -38.45811 -37.59007 -34.89033 -34.01110 -33.00346 -31.84140 -31.02877 -30.36971 -29.12541 -26.88027 -25.97708 -24.97271 -23.40002 -22.80901 -21.99634 -20.85543 -19.96442 -19.15897 -18.09618 -17.59865 -17.06409 -16.86395 -16.26202 -15.71185 -15.18005 -14.91877 -14.80626 -14.62763 -14.53244 -14.09134 -13.92156 -13.88873 -13.51872 -13.26334 -13.19049 -12.98995 -12.54774 -12.38546 -12.12381 -11.98550 -11.86738 -11.75731 -11.29902 -11.13654 -10.93704 -10.60771 -10.44611 -10.38832 -10.26079 -10.09472 -9.88471 -9.82495 -9.75179 -9.18392 -9.13248 -9.00796 -8.64132 -7.06191 -5.90272 -3.18711 0.34639 1.23390 2.35952 2.89304 3.07930 3.31996 3.34159 3.41795 3.42539 3.79853 4.27581 4.41326 4.53578 4.62904 4.69269 4.76582 4.87375 4.92414 5.17074 5.21516 5.23900 5.30350 5.43805 5.50803 5.55792 5.63079 5.70162 5.78490 5.84165 5.86129 5.95967 6.02571 6.09306 6.11820 6.13695 6.21943 6.24870 6.31586 6.50192 6.57545 6.60529 6.66553 6.68655 7.14561 7.43967 7.59991 8.05457 8.07562 8.28619 9.40970 9.95545 10.30774 11.32380 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.004570 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.822054 B = 6126.014350 C = 9327.503786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C 0.167 3.833 4 N -0.731 5.731 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.010 4.010 8 N -0.933 5.933 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.123 4.123 14 C 0.107 3.893 15 N -0.608 5.608 16 C 0.572 3.428 17 O -0.542 6.542 18 C -0.106 4.106 19 C -0.126 4.126 20 C -0.086 4.086 21 C -0.120 4.120 22 C 0.564 3.436 23 N -0.848 5.848 24 O -0.544 6.544 25 C -0.072 4.072 26 C -0.072 4.072 27 C 0.099 3.901 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.175 0.825 40 H 0.138 0.862 41 H 0.406 0.594 42 H 0.405 0.595 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.089 0.911 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.854 -10.227 1.447 10.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.080 4.080 3 C 0.039 3.961 4 N -0.376 5.376 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.206 4.206 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.162 4.162 14 C -0.015 4.015 15 N -0.341 5.341 16 C 0.362 3.638 17 O -0.421 6.421 18 C -0.109 4.109 19 C -0.143 4.143 20 C -0.105 4.105 21 C -0.124 4.124 22 C 0.350 3.650 23 N -0.412 5.412 24 O -0.422 6.422 25 C -0.091 4.091 26 C -0.091 4.091 27 C -0.023 4.023 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.192 0.808 40 H 0.155 0.845 41 H 0.237 0.763 42 H 0.236 0.764 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.107 0.893 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.330 -11.378 1.412 11.700 hybrid contribution -0.080 1.506 -0.667 1.649 sum 2.250 -9.872 0.745 10.152 Atomic orbital electron populations 1.21768 0.93088 1.00837 1.03373 1.21941 0.96625 0.96171 0.93225 1.20676 0.96214 0.87981 0.91257 1.42369 1.62650 1.11979 1.20589 1.19260 1.26100 0.88546 1.03088 0.91124 1.24685 1.00462 0.98248 0.97249 1.69646 1.40639 1.36390 1.11509 0.86161 0.77665 0.84958 0.77650 1.20588 1.21886 1.21890 1.22936 1.02346 0.93151 0.97747 1.22257 1.00634 0.97915 0.80657 1.48400 1.62343 1.11838 1.11544 1.17982 0.77113 0.82753 0.85986 1.90749 1.51435 1.26312 1.73636 1.20084 1.02711 0.94985 0.93127 1.22969 0.96836 0.98332 0.96193 1.21407 0.96978 0.98302 0.93818 1.20123 1.03891 0.95351 0.93020 1.18333 0.76199 0.82777 0.87665 1.43795 1.72286 1.11563 1.13516 1.90796 1.47232 1.41074 1.63094 1.21197 0.96932 0.96498 0.94496 1.21215 0.96257 0.98990 0.92657 1.22751 1.01077 0.80900 0.97544 0.93327 0.92191 0.91128 0.95533 0.95923 0.78235 0.93556 0.89531 0.90276 0.91260 0.90352 0.80808 0.84478 0.76313 0.76379 0.84127 0.84133 0.89340 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.26 37.16 0.31 -1.44 16 2 C -0.08 -1.05 0.61 -152.52 -0.09 -1.14 16 3 C 0.17 2.83 5.07 -4.04 -0.02 2.81 16 4 N -0.73 -15.80 5.15 -59.91 -0.31 -16.11 16 5 C -0.24 -6.00 9.99 -15.06 -0.15 -6.15 16 6 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 7 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 8 N -0.93 -25.24 13.06 55.49 0.72 -24.52 16 9 Si 0.90 20.77 29.55 -169.99 -5.02 15.75 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 C -0.12 -1.35 6.04 -24.43 -0.15 -1.49 16 14 C 0.11 1.26 6.61 -2.53 -0.02 1.24 16 15 N -0.61 -8.21 3.33 -176.39 -0.59 -8.80 16 16 C 0.57 8.63 7.81 -12.25 -0.10 8.53 16 17 O -0.54 -9.48 16.59 5.34 0.09 -9.39 16 18 C -0.11 -1.46 5.88 -104.90 -0.62 -2.08 16 19 C -0.13 -1.65 8.60 -39.24 -0.34 -1.98 16 20 C -0.09 -1.04 9.53 -39.24 -0.37 -1.41 16 21 C -0.12 -1.51 5.88 -104.90 -0.62 -2.12 16 22 C 0.56 7.19 8.05 -12.25 -0.10 7.09 16 23 N -0.85 -7.85 8.82 30.57 0.27 -7.58 16 24 O -0.54 -8.67 17.17 5.34 0.09 -8.57 16 25 C -0.07 -0.90 9.58 -39.24 -0.38 -1.27 16 26 C -0.07 -0.93 9.58 -39.24 -0.38 -1.30 16 27 C 0.10 1.34 3.47 -3.06 -0.01 1.32 16 28 H 0.05 0.56 7.44 -51.93 -0.39 0.18 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.08 7.13 -51.93 -0.37 0.71 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 33 H 0.38 8.55 6.38 -40.82 -0.26 8.29 16 34 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 36 H 0.08 0.86 8.04 -51.93 -0.42 0.45 16 37 H 0.07 0.76 7.71 -51.93 -0.40 0.35 16 38 H 0.08 0.92 7.98 -51.93 -0.41 0.51 16 39 H 0.18 2.32 2.72 -58.73 -0.16 2.16 16 40 H 0.14 1.41 6.39 -52.49 -0.34 1.08 16 41 H 0.41 3.13 6.85 -40.82 -0.28 2.85 16 42 H 0.41 3.11 8.93 -40.82 -0.36 2.75 16 43 H 0.14 1.63 7.64 -52.48 -0.40 1.23 16 44 H 0.14 1.69 7.66 -52.49 -0.40 1.29 16 45 H 0.09 1.28 6.42 -51.93 -0.33 0.95 16 46 H 0.08 1.13 6.44 -51.93 -0.33 0.80 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -31.67 371.78 -8.35 -40.02 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -6.09 Total: 13.37 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -3.12 Total: 0.23 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.10 Total: -57.01 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.18 Total: -17.97 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.67 -8.35 -40.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500401715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.631 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds