Wall clock time and date at job start Tue Mar 31 2020 17:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 110.78201 * 2 1 4 4 N 1.46500 * 109.47204 * 298.21891 * 3 2 1 5 5 C 1.36934 * 119.99944 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00572 * 359.97438 * 5 4 3 7 7 C 1.38815 * 119.99865 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00043 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00006 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47283 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47097 * 119.99791 * 9 7 5 12 12 H 1.48504 * 109.47245 * 239.99696 * 9 7 5 13 13 C 1.55436 * 110.71013 * 123.21473 * 2 1 3 14 14 C 1.54912 * 101.45214 * 82.88791 * 13 2 1 15 15 N 1.47425 * 104.92689 * 37.00616 * 14 13 2 16 16 C 1.34777 * 125.64952 * 155.79622 * 15 14 13 17 17 O 1.21532 * 119.99865 * 354.34840 * 16 15 14 18 18 C 1.48029 * 120.00117 * 174.34926 * 16 15 14 19 19 C 1.39556 * 120.00106 * 7.05120 * 18 16 15 20 20 C 1.37822 * 120.00141 * 179.76472 * 19 18 16 21 21 C 1.39556 * 119.99998 * 0.50965 * 20 19 18 22 22 C 1.48029 * 120.00172 * 179.76473 * 21 20 19 23 23 N 1.34775 * 120.00074 * 359.97438 * 22 21 20 24 24 O 1.21526 * 120.00105 * 179.97438 * 22 21 20 25 25 C 1.39558 * 119.99676 * 359.74237 * 21 20 19 26 26 C 1.37819 * 120.00192 * 0.02562 * 25 21 20 27 27 C 1.47026 * 108.70128 * 335.81902 * 15 14 13 28 28 H 1.08993 * 109.47062 * 181.78452 * 1 2 3 29 29 H 1.08996 * 109.47013 * 301.78602 * 1 2 3 30 30 H 1.09004 * 109.47007 * 61.78156 * 1 2 3 31 31 H 1.09002 * 109.47126 * 58.21651 * 3 2 1 32 32 H 1.08998 * 109.47137 * 178.21480 * 3 2 1 33 33 H 0.97002 * 120.00143 * 359.97438 * 4 3 2 34 34 H 0.96998 * 119.99798 * 179.97438 * 8 7 5 35 35 H 1.09000 * 111.11932 * 324.83796 * 13 2 1 36 36 H 1.08997 * 111.02017 * 200.89511 * 13 2 1 37 37 H 1.08995 * 110.36755 * 278.11525 * 14 13 2 38 38 H 1.08996 * 110.37001 * 155.90062 * 14 13 2 39 39 H 1.08000 * 120.00021 * 359.97438 * 19 18 16 40 40 H 1.07998 * 119.99718 * 180.25008 * 20 19 18 41 41 H 0.97003 * 119.99870 * 0.02562 * 23 22 21 42 42 H 0.96995 * 120.00157 * 180.02562 * 23 22 21 43 43 H 1.08007 * 120.00006 * 179.97438 * 25 21 20 44 44 H 1.08000 * 119.99898 * 180.02562 * 26 25 21 45 45 H 1.09000 * 109.87868 * 120.48060 * 27 15 14 46 46 H 1.09000 * 109.87654 * 241.48760 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 7 1.6355 2.1188 -1.2171 5 6 2.0022 3.4196 -1.4373 6 1 2.6134 3.9384 -0.7136 7 6 1.5882 4.0717 -2.5907 8 7 0.8438 3.4394 -3.4730 9 14 2.0890 5.8460 -2.8915 10 1 2.9199 6.3248 -1.7577 11 1 2.8715 5.9328 -4.1506 12 1 0.8731 6.6910 -3.0050 13 6 2.0797 -0.7964 1.2164 14 6 2.0126 -2.2509 0.6874 15 7 2.3716 -2.1531 -0.7391 16 6 2.8859 -3.1474 -1.4896 17 8 3.1865 -4.2056 -0.9730 18 6 3.0848 -2.9506 -2.9432 19 6 2.8799 -1.6926 -3.5116 20 6 3.0698 -1.5082 -4.8641 21 6 3.4567 -2.5819 -5.6672 22 6 3.6556 -2.3851 -7.1208 23 7 3.4625 -1.1691 -7.6688 24 8 3.9930 -3.3200 -7.8200 25 6 3.6566 -3.8412 -5.0997 26 6 3.4713 -4.0244 -3.7464 27 6 2.0760 -0.7911 -1.2073 28 1 -0.3633 -1.0271 0.0320 29 1 -0.3633 0.5413 0.8735 30 1 -0.3633 0.4859 -0.9056 31 1 1.6957 1.9622 0.8736 32 1 3.1621 1.4057 0.0320 33 1 1.0862 1.6531 -1.8669 34 1 0.5542 3.8951 -4.2788 35 1 1.4410 -0.6688 2.0904 36 1 3.1070 -0.5090 1.4399 37 1 1.0039 -2.6488 0.7983 38 1 2.7282 -2.8803 1.2164 39 1 2.5757 -0.8627 -2.8909 40 1 2.9150 -0.5337 -5.3032 41 1 3.1936 -0.4227 -7.1106 42 1 3.5925 -1.0402 -8.6213 43 1 3.9556 -4.6723 -5.7212 44 1 3.6264 -4.9988 -3.3072 45 1 2.9868 -0.3206 -1.5776 46 1 1.3282 -0.8256 -1.9996 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500401715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:50 Heat of formation + Delta-G solvation = -34.994866 kcal Electronic energy + Delta-G solvation = -28630.429460 eV Core-core repulsion = 24712.914286 eV Total energy + Delta-G solvation = -3917.515174 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.93526 -40.93319 -39.57172 -38.71318 -36.42181 -34.96844 -34.40630 -33.07355 -32.02803 -31.85326 -30.22209 -27.98466 -27.39001 -26.19289 -24.82516 -23.83630 -23.24052 -21.84704 -21.03931 -20.35363 -19.14243 -19.00778 -18.38874 -17.86662 -17.33305 -16.86743 -16.58370 -16.13609 -15.95456 -15.76914 -15.67794 -15.31176 -15.24767 -14.97708 -14.77937 -14.67801 -14.42517 -14.03455 -13.70161 -13.51073 -13.29785 -13.20668 -13.02761 -12.83253 -12.79288 -12.69974 -12.31887 -12.05818 -11.93051 -11.58895 -11.47170 -11.40726 -11.26331 -11.01104 -10.83671 -10.80841 -10.22008 -10.14661 -9.73001 -8.88475 -7.86895 -5.12907 -0.69489 0.23181 1.28933 1.52068 1.55525 1.62195 1.81954 2.00115 2.41948 2.62143 2.76683 3.20925 3.38743 3.48877 3.63185 3.73000 3.77569 3.82134 3.91230 4.14145 4.18624 4.25835 4.28715 4.36755 4.41690 4.54823 4.58255 4.73911 4.78491 4.84675 4.89467 5.01079 5.07508 5.10520 5.11842 5.13938 5.15004 5.23694 5.29862 5.32083 5.53306 5.61267 5.63361 5.79739 6.28557 6.31301 6.36265 6.93180 7.16361 7.44931 8.18385 8.43914 9.35951 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.004570 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.822054 B = 6126.014350 C = 9327.503786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C 0.167 3.833 4 N -0.737 5.737 5 C -0.238 4.238 6 H 0.071 0.929 7 C -0.062 4.062 8 N -0.960 5.960 9 Si 0.958 3.042 10 H -0.273 1.273 11 H -0.294 1.294 12 H -0.299 1.299 13 C -0.111 4.111 14 C 0.104 3.896 15 N -0.605 5.605 16 C 0.568 3.432 17 O -0.572 6.572 18 C -0.117 4.117 19 C -0.129 4.129 20 C -0.083 4.083 21 C -0.122 4.122 22 C 0.563 3.437 23 N -0.829 5.829 24 O -0.580 6.580 25 C -0.073 4.073 26 C -0.072 4.072 27 C 0.105 3.895 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.029 0.971 32 H 0.023 0.977 33 H 0.379 0.621 34 H 0.250 0.750 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.172 0.828 40 H 0.155 0.845 41 H 0.416 0.584 42 H 0.415 0.585 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.079 0.921 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.860 -9.886 2.314 10.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C 0.040 3.960 4 N -0.381 5.381 5 C -0.371 4.371 6 H 0.089 0.911 7 C -0.255 4.255 8 N -0.610 5.610 9 Si 0.789 3.211 10 H -0.198 1.198 11 H -0.222 1.222 12 H -0.227 1.227 13 C -0.149 4.149 14 C -0.018 4.018 15 N -0.337 5.337 16 C 0.359 3.641 17 O -0.453 6.453 18 C -0.120 4.120 19 C -0.147 4.147 20 C -0.102 4.102 21 C -0.126 4.126 22 C 0.349 3.651 23 N -0.393 5.393 24 O -0.461 6.461 25 C -0.092 4.092 26 C -0.091 4.091 27 C -0.017 4.017 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.212 0.788 34 H 0.059 0.941 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.188 0.812 40 H 0.172 0.828 41 H 0.248 0.752 42 H 0.248 0.752 43 H 0.165 0.835 44 H 0.163 0.837 45 H 0.096 0.904 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.337 -10.991 2.318 11.473 hybrid contribution -0.073 1.422 -0.888 1.678 sum 2.265 -9.569 1.430 9.936 Atomic orbital electron populations 1.21703 0.92632 1.01772 1.02366 1.21815 0.96817 0.94145 0.94532 1.20779 0.96138 0.89743 0.89306 1.42487 1.62443 1.11205 1.21969 1.19568 1.24944 0.89904 1.02637 0.91117 1.25280 1.01400 1.01237 0.97618 1.69755 1.42062 1.37391 1.11834 0.85306 0.76918 0.81473 0.77417 1.19754 1.22172 1.22680 1.22918 1.02922 0.91730 0.97312 1.22435 1.01374 0.98462 0.79499 1.48436 1.61515 1.11396 1.12311 1.18174 0.76866 0.82582 0.86500 1.90727 1.52939 1.27381 1.74242 1.20110 1.03601 0.95569 0.92745 1.22942 0.97135 0.97965 0.96615 1.21553 0.96289 0.98941 0.93381 1.20197 1.03771 0.95505 0.93115 1.18374 0.75957 0.83193 0.87539 1.43669 1.70617 1.10744 1.14247 1.90781 1.49250 1.42367 1.63739 1.21309 0.96597 0.96864 0.94388 1.21281 0.96058 0.99050 0.92743 1.22637 1.00532 0.80879 0.97625 0.91522 0.91521 0.93658 0.95341 0.95946 0.78789 0.94068 0.87020 0.90025 0.89950 0.90269 0.81153 0.82797 0.75183 0.75231 0.83457 0.83658 0.90357 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.26 71.98 0.59 -2.51 16 2 C -0.07 -1.79 0.61 -50.89 -0.03 -1.83 16 3 C 0.17 5.44 5.07 86.38 0.44 5.88 16 4 N -0.74 -31.40 5.15 -343.44 -1.77 -33.17 16 5 C -0.24 -11.80 9.99 84.03 0.84 -10.96 16 6 H 0.07 3.44 7.83 -2.91 -0.02 3.42 16 7 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 8 N -0.96 -51.88 13.06 21.65 0.28 -51.60 16 9 Si 0.96 42.36 29.55 68.60 2.03 44.39 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 13 C -0.11 -2.11 6.04 32.09 0.19 -1.91 16 14 C 0.10 2.19 6.61 86.86 0.57 2.77 16 15 N -0.61 -15.62 3.33 -830.25 -2.76 -18.38 16 16 C 0.57 16.86 7.81 86.84 0.68 17.54 16 17 O -0.57 -19.78 16.59 -3.82 -0.06 -19.84 16 18 C -0.12 -3.19 5.88 -20.04 -0.12 -3.31 16 19 C -0.13 -3.31 8.60 22.49 0.19 -3.12 16 20 C -0.08 -1.93 9.53 22.49 0.21 -1.71 16 21 C -0.12 -2.97 5.88 -20.04 -0.12 -3.08 16 22 C 0.56 13.87 8.05 86.84 0.70 14.57 16 23 N -0.83 -14.16 8.82 -175.48 -1.55 -15.71 16 24 O -0.58 -18.27 17.17 -3.80 -0.07 -18.34 16 25 C -0.07 -1.77 9.58 22.49 0.22 -1.56 16 26 C -0.07 -1.83 9.58 22.49 0.22 -1.62 16 27 C 0.11 2.73 3.47 86.73 0.30 3.03 16 28 H 0.07 1.38 7.44 -2.39 -0.02 1.36 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.34 7.13 -2.39 -0.02 1.32 16 31 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.02 0.75 8.13 -2.39 -0.02 0.73 16 33 H 0.38 16.83 6.38 -92.71 -0.59 16.24 16 34 H 0.25 13.25 8.31 -92.71 -0.77 12.48 16 35 H 0.11 1.63 8.05 -2.39 -0.02 1.61 16 36 H 0.08 1.56 8.04 -2.39 -0.02 1.54 16 37 H 0.08 1.56 7.71 -2.39 -0.02 1.54 16 38 H 0.08 1.71 7.98 -2.39 -0.02 1.69 16 39 H 0.17 4.50 2.72 -8.77 -0.02 4.48 16 40 H 0.15 2.96 6.39 -2.91 -0.02 2.94 16 41 H 0.42 5.68 6.85 -92.71 -0.64 5.05 16 42 H 0.42 5.76 8.93 -92.71 -0.83 4.93 16 43 H 0.15 3.37 7.64 -2.91 -0.02 3.34 16 44 H 0.15 3.49 7.66 -2.91 -0.02 3.47 16 45 H 0.08 2.23 6.42 -2.39 -0.02 2.21 16 46 H 0.08 2.16 6.44 -2.39 -0.02 2.14 16 Total: -1.00 -66.69 371.78 0.44 -66.24 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: -1.01 Total: 36.97 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.36 Total: 9.44 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -5.80 Total: -118.86 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.13 Total: -38.18 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -66.69 0.44 -66.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500401715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.250 kcal (2) G-P(sol) polarization free energy of solvation -66.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds