Wall clock time and date at job start Tue Mar 31 2020 17:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 110.53622 * 2 1 4 4 O 1.21280 * 119.99764 * 118.84394 * 3 2 1 5 5 N 1.34775 * 120.00089 * 298.84321 * 3 2 1 6 6 C 1.46502 * 119.99680 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.46854 * 179.97438 * 6 5 3 8 8 C 1.38238 * 119.99969 * 269.72770 * 7 6 5 9 9 C 1.38235 * 119.99644 * 179.77030 * 8 7 6 10 10 C 1.38238 * 120.00444 * 0.47523 * 9 8 7 11 11 C 1.50700 * 120.00244 * 179.77027 * 10 9 8 12 12 N 1.46502 * 109.46854 * 270.02679 * 11 10 9 13 13 C 1.36941 * 119.99355 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00325 * 359.97438 * 13 12 11 15 15 C 1.38811 * 119.99665 * 180.02562 * 13 12 11 16 16 N 1.31618 * 120.00367 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99901 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47131 * 89.99848 * 17 15 13 19 19 H 1.48502 * 109.47071 * 209.99618 * 17 15 13 20 20 H 1.48498 * 109.47488 * 329.99722 * 17 15 13 21 21 C 1.38240 * 119.99370 * 359.80164 * 10 9 8 22 22 C 1.38233 * 119.99932 * 90.00076 * 7 6 5 23 23 C 1.54625 * 110.48837 * 122.61672 * 2 1 3 24 24 C 1.54474 * 101.76763 * 143.47516 * 23 2 1 25 25 N 1.46761 * 105.47258 * 334.58255 * 24 23 2 26 26 C 1.34417 * 111.30293 * 17.01799 * 25 24 23 27 27 O 1.21283 * 124.94747 * 179.63100 * 26 25 24 28 28 H 1.09006 * 109.46962 * 181.15611 * 1 2 3 29 29 H 1.09004 * 109.47188 * 301.15370 * 1 2 3 30 30 H 1.09002 * 109.47227 * 61.16009 * 1 2 3 31 31 H 0.97000 * 120.00112 * 359.97438 * 5 3 2 32 32 H 1.08998 * 109.47404 * 299.99642 * 6 5 3 33 33 H 1.08997 * 109.46963 * 60.00107 * 6 5 3 34 34 H 1.07990 * 120.00178 * 359.97438 * 8 7 6 35 35 H 1.08002 * 119.99927 * 180.25282 * 9 8 7 36 36 H 1.08998 * 109.46981 * 30.02775 * 11 10 9 37 37 H 1.08997 * 109.47091 * 150.03058 * 11 10 9 38 38 H 0.96989 * 120.00650 * 0.02562 * 12 11 10 39 39 H 0.96996 * 120.00474 * 180.02562 * 16 15 13 40 40 H 1.07997 * 119.99450 * 179.97438 * 21 10 9 41 41 H 1.07995 * 120.00090 * 359.97438 * 22 7 6 42 42 H 1.09001 * 110.96806 * 261.59642 * 23 2 1 43 43 H 1.09007 * 110.96934 * 25.35624 * 23 2 1 44 44 H 1.08998 * 110.24827 * 215.58069 * 24 23 2 45 45 H 1.09000 * 110.31659 * 93.61957 * 24 23 2 46 46 H 0.97006 * 124.35018 * 196.98768 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 8 2.7459 1.8013 0.9200 5 7 1.7678 2.2398 -1.0224 6 6 2.2822 3.6116 -1.0226 7 6 1.8170 4.3223 -2.2674 8 6 2.5884 4.2846 -3.4139 9 6 2.1593 4.9326 -4.5571 10 6 0.9637 5.6265 -4.5509 11 6 0.4985 6.3372 -5.7957 12 7 1.0129 7.7089 -5.7959 13 6 0.7173 8.5508 -6.8348 14 1 0.1054 8.2034 -7.6540 15 6 1.2052 9.8503 -6.8353 16 7 1.9514 10.2736 -5.8371 17 14 0.8026 10.9985 -8.2526 18 1 -0.4522 11.7340 -7.9528 19 1 1.9128 11.9677 -8.4352 20 1 0.6271 10.2068 -9.4966 21 6 0.1952 5.6689 -3.4026 22 6 0.6217 5.0166 -2.2610 23 6 2.0712 -0.7807 1.2200 24 6 3.3199 -1.4686 0.6252 25 7 3.0563 -1.5817 -0.8142 26 6 2.0595 -0.7638 -1.1938 27 8 1.6443 -0.6544 -2.3281 28 1 -0.3633 -1.0275 0.0207 29 1 -0.3634 0.5317 0.8795 30 1 -0.3634 0.4957 -0.9002 31 1 1.2185 1.9277 -1.7584 32 1 1.9122 4.1385 -0.1431 33 1 3.3718 3.5909 -1.0021 34 1 3.5245 3.7462 -3.4175 35 1 2.7599 4.8998 -5.4541 36 1 0.8689 5.8101 -6.6750 37 1 -0.5911 6.3578 -5.8166 38 1 1.5628 8.0208 -5.0604 39 1 2.2920 11.1818 -5.8372 40 1 -0.7387 6.2113 -3.3977 41 1 0.0211 5.0494 -1.3641 42 1 2.3471 -0.1015 2.0267 43 1 1.3461 -1.5184 1.5640 44 1 3.4504 -2.4580 1.0636 45 1 4.2068 -0.8594 0.7995 46 1 3.5396 -2.1707 -1.4145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568120396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:25 Heat of formation + Delta-G solvation = -38.627106 kcal Electronic energy + Delta-G solvation = -27388.370649 eV Core-core repulsion = 23470.697969 eV Total energy + Delta-G solvation = -3917.672680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62366 -39.56701 -38.86504 -36.83497 -35.52973 -34.39088 -33.65808 -32.01972 -30.69411 -30.20438 -29.20982 -27.15449 -25.91549 -24.50463 -22.89606 -22.46972 -22.27794 -21.91289 -20.48588 -19.78712 -18.07516 -17.74458 -17.27742 -16.39446 -16.00979 -15.90716 -15.38396 -15.21474 -14.78218 -14.69672 -14.54046 -14.29363 -14.14325 -13.96431 -13.37533 -13.25544 -13.18483 -13.14911 -12.95025 -12.69792 -12.68279 -12.33939 -12.04676 -11.88408 -11.82299 -11.64168 -11.07482 -10.85470 -10.71835 -10.60063 -10.43173 -10.09620 -10.06055 -9.77208 -9.61476 -9.33410 -8.90165 -8.66058 -8.41946 -6.94149 -5.76419 -3.06321 1.40296 1.67140 1.90408 2.28010 2.81424 3.03489 3.43816 3.48673 3.50680 3.68497 3.87564 4.00934 4.20530 4.45389 4.51032 4.61682 4.69304 4.79058 4.96026 5.01270 5.16011 5.19340 5.20798 5.32984 5.37057 5.39863 5.51430 5.55013 5.56892 5.61792 5.76521 5.86793 6.11883 6.16068 6.18884 6.21825 6.22723 6.46110 6.50687 6.60226 6.65161 6.71317 7.12235 7.19138 7.25146 7.69066 7.70797 7.84440 8.41305 9.52832 10.08926 10.44798 11.46050 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.029975 B = 0.001966 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.878424 B =14241.474660 C =14452.240592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.120 4.120 3 C 0.534 3.466 4 O -0.532 6.532 5 N -0.713 5.713 6 C 0.166 3.834 7 C -0.126 4.126 8 C -0.101 4.101 9 C -0.106 4.106 10 C -0.063 4.063 11 C 0.184 3.816 12 N -0.727 5.727 13 C -0.242 4.242 14 H 0.072 0.928 15 C -0.013 4.013 16 N -0.931 5.931 17 Si 0.909 3.091 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 C -0.106 4.106 22 C -0.103 4.103 23 C -0.118 4.118 24 C 0.098 3.902 25 N -0.728 5.728 26 C 0.530 3.470 27 O -0.515 6.515 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.409 0.591 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -27.019 16.838 31.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.127 4.127 3 C 0.318 3.682 4 O -0.409 6.409 5 N -0.365 5.365 6 C 0.043 3.957 7 C -0.127 4.127 8 C -0.120 4.120 9 C -0.124 4.124 10 C -0.063 4.063 11 C 0.057 3.943 12 N -0.371 5.371 13 C -0.373 4.373 14 H 0.090 0.910 15 C -0.210 4.210 16 N -0.580 5.580 17 Si 0.740 3.260 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.156 4.156 24 C -0.026 4.026 25 N -0.383 5.383 26 C 0.314 3.686 27 O -0.390 6.390 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.245 0.755 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.279 -26.507 16.801 31.385 hybrid contribution 0.074 0.436 -1.118 1.202 sum 0.353 -26.071 15.683 30.427 Atomic orbital electron populations 1.21694 0.89362 1.03774 1.03888 1.21643 0.99776 0.94097 0.97184 1.19679 0.80270 0.85906 0.82384 1.90704 1.38203 1.76517 1.35506 1.46161 1.53559 1.12899 1.23837 1.20215 0.99099 0.80431 0.95936 1.19638 0.96565 1.01629 0.94862 1.20978 0.99200 0.99273 0.92529 1.21119 0.95993 0.97025 0.98284 1.20392 0.94126 0.95425 0.96398 1.19710 0.96542 0.86649 0.91392 1.42339 1.61866 1.06938 1.25965 1.19245 1.26288 0.92489 0.99271 0.91048 1.24770 1.00399 0.97468 0.98322 1.69673 1.39026 1.17457 1.31822 0.86161 0.77345 0.80798 0.81696 1.21682 1.21752 1.20721 1.21114 1.00324 0.98711 0.92338 1.20970 0.95547 0.97404 0.98195 1.22723 0.96690 0.99337 0.96826 1.22156 0.98891 1.01810 0.79750 1.46156 1.37159 1.43887 1.11134 1.20331 0.79709 0.79726 0.88811 1.90802 1.60962 1.66117 1.21112 0.90889 0.90650 0.90782 0.75528 0.90402 0.90662 0.86430 0.85796 0.95356 0.95347 0.78053 0.93463 0.85769 0.86293 0.87099 0.89039 0.89695 0.90383 0.74682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 8.33 37.16 0.31 -0.53 16 2 C -0.12 -0.96 0.74 -155.67 -0.12 -1.08 16 3 C 0.53 5.67 6.55 -10.99 -0.07 5.60 16 4 O -0.53 -6.91 15.46 5.56 0.09 -6.82 16 5 N -0.71 -7.61 5.41 -61.47 -0.33 -7.94 16 6 C 0.17 1.89 5.80 -5.19 -0.03 1.86 16 7 C -0.13 -1.64 5.25 -104.62 -0.55 -2.19 16 8 C -0.10 -1.42 9.70 -39.58 -0.38 -1.80 16 9 C -0.11 -1.71 9.70 -39.58 -0.38 -2.09 16 10 C -0.06 -1.11 5.25 -104.62 -0.55 -1.66 16 11 C 0.18 3.81 6.38 -5.19 -0.03 3.78 16 12 N -0.73 -18.82 5.59 -61.09 -0.34 -19.17 16 13 C -0.24 -6.85 9.99 -15.06 -0.15 -7.01 16 14 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 15 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 16 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 17 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 C -0.11 -1.68 9.70 -39.58 -0.38 -2.07 16 22 C -0.10 -1.38 9.70 -39.58 -0.38 -1.77 16 23 C -0.12 -0.64 6.05 -25.10 -0.15 -0.79 16 24 C 0.10 0.46 7.78 -3.13 -0.02 0.44 16 25 N -0.73 -4.81 6.24 -59.21 -0.37 -5.18 16 26 C 0.53 5.04 7.08 -10.86 -0.08 4.97 16 27 O -0.52 -6.65 17.69 5.56 0.10 -6.55 16 28 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.54 7.77 -51.93 -0.40 0.14 16 31 H 0.41 4.33 7.85 -40.82 -0.32 4.00 16 32 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.03 0.59 8.09 -51.93 -0.42 0.17 16 37 H 0.03 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.39 10.65 7.66 -40.82 -0.31 10.34 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 41 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 42 H 0.11 0.69 6.91 -51.93 -0.36 0.33 16 43 H 0.09 0.30 7.90 -51.93 -0.41 -0.11 16 44 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.41 2.10 8.96 -40.82 -0.37 1.74 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -34.67 388.16 -9.16 -43.83 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -6.78 Total: 11.10 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -3.07 Total: -4.83 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.32 Total: -60.13 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.18 Total: -13.37 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.67 -9.16 -43.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568120396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.205 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds